##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139435_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6676806 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.07175511764158 30.0 18.0 33.0 18.0 33.0 2 29.977668813501545 32.0 28.0 33.0 25.0 33.0 3 31.70659623778196 33.0 31.0 33.0 29.0 33.0 4 31.544522036434785 33.0 31.0 33.0 29.0 33.0 5 32.64939972795376 33.0 33.0 33.0 31.0 34.0 6 36.404214380348925 38.0 37.0 38.0 34.0 38.0 7 37.02407273777312 38.0 38.0 38.0 36.0 38.0 8 37.18571409742922 38.0 38.0 38.0 36.0 38.0 9 37.22205467704169 38.0 38.0 38.0 36.0 38.0 10-11 37.28134769828567 38.0 38.0 38.0 36.5 38.0 12-13 37.2999300863317 38.0 38.0 38.0 37.0 38.0 14-15 37.320985213588656 38.0 38.0 38.0 37.0 38.0 16-17 37.332350752740155 38.0 38.0 38.0 37.0 38.0 18-19 37.333996749343925 38.0 38.0 38.0 37.0 38.0 20-21 37.29690705457189 38.0 38.0 38.0 37.0 38.0 22-23 37.30940246307084 38.0 38.0 38.0 37.0 38.0 24-25 37.32993548635018 38.0 38.0 38.0 37.0 38.0 26-27 37.304507031744706 38.0 38.0 38.0 37.0 38.0 28-29 37.28243186187434 38.0 38.0 38.0 37.0 38.0 30-31 37.28141319575914 38.0 38.0 38.0 37.0 38.0 32-33 37.21998952715896 38.0 38.0 38.0 36.5 38.0 34-35 37.23091547229647 38.0 38.0 38.0 37.0 38.0 36-37 37.2262765050077 38.0 38.0 38.0 37.0 38.0 38-39 37.21826264833412 38.0 38.0 38.0 37.0 38.0 40-41 37.21197008055158 38.0 38.0 38.0 37.0 38.0 42-43 37.18774815247527 38.0 38.0 38.0 36.0 38.0 44-45 37.1682022735455 38.0 38.0 38.0 36.0 38.0 46-47 37.14250604360467 38.0 38.0 38.0 36.0 38.0 48-49 37.102508183619385 38.0 38.0 38.0 36.0 38.0 50-51 37.07555959552606 38.0 38.0 38.0 36.0 38.0 52-53 37.043871734869995 38.0 38.0 38.0 36.0 38.0 54-55 37.01872078924508 38.0 38.0 38.0 36.0 38.0 56-57 36.98531097577633 38.0 38.0 38.0 36.0 38.0 58-59 36.99087727223581 38.0 38.0 38.0 36.0 38.0 60-61 37.01685637510246 38.0 38.0 38.0 36.0 38.0 62-63 37.02361407900824 38.0 38.0 38.0 36.0 38.0 64-65 37.02206493048136 38.0 38.0 38.0 36.0 38.0 66-67 37.025323928350744 38.0 38.0 38.0 36.0 38.0 68-69 37.0230841530695 38.0 38.0 38.0 36.0 38.0 70-71 37.01135517288691 38.0 38.0 38.0 36.0 38.0 72-73 36.990927698950415 38.0 38.0 38.0 36.0 38.0 74-75 36.98651566552011 38.0 38.0 38.0 36.0 38.0 76-77 36.98212698890963 38.0 38.0 38.0 36.0 38.0 78-79 36.95837972956991 38.0 38.0 38.0 36.0 38.0 80-81 36.93155562506719 38.0 38.0 38.0 36.0 38.0 82-83 36.93082759967749 38.0 38.0 38.0 36.0 38.0 84-85 36.880772327103486 38.0 38.0 38.0 35.5 38.0 86-87 36.866046786349074 38.0 38.0 38.0 35.0 38.0 88-89 36.869675248446235 38.0 38.0 38.0 35.0 38.0 90-91 36.84758946813375 38.0 38.0 38.0 35.0 38.0 92-93 36.85224088102848 38.0 38.0 38.0 35.0 38.0 94-95 36.79998100820218 38.0 38.0 38.0 35.0 38.0 96-97 36.77374299900892 38.0 38.0 38.0 35.0 38.0 98-99 36.84842132540733 38.0 38.0 38.0 35.0 38.0 100 35.24482771963694 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 7.0 19 41.0 20 94.0 21 217.0 22 586.0 23 1514.0 24 3571.0 25 7067.0 26 12104.0 27 19648.0 28 29540.0 29 43610.0 30 59243.0 31 77718.0 32 102574.0 33 138682.0 34 204267.0 35 357258.0 36 1012093.0 37 4606970.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.10064273246819 22.727903132126347 14.814403773301185 24.357050362104278 2 13.453172305892227 22.452972504375712 41.51333323148548 22.580521958246575 3 17.17929201477473 27.181709338267428 31.039811550612672 24.59918709634517 4 12.292509322571302 19.111982585685432 39.76212578289679 28.833382308846478 5 13.116937699170398 38.212377726825835 35.74868597714592 12.921998596857847 6 28.677921068416808 39.04591948681965 19.49057893794852 12.785580506815023 7 25.264535168462288 33.13894398010066 24.514565796879527 17.081955054557525 8 23.625517949750225 37.17988810817627 22.0302342167797 17.164359725293803 9 25.104713241630805 17.038371341027432 22.089768670828537 35.76714674651323 10-11 23.42176034469176 27.308409140538153 29.7468654922728 19.522965022497285 12-13 24.33345375019133 24.877059480236507 29.813461706091203 20.976025063480954 14-15 21.618143465603165 26.240368523512593 27.325535592916733 24.815952417967512 16-17 21.19619021430307 29.12315409493701 28.114984919436033 21.565670771323894 18-19 21.253066211598778 28.514652065673317 29.526101252604914 20.70618047012299 20-21 22.115246289568766 27.652389094076423 29.28325118301624 20.949113433338574 22-23 21.808850555094686 27.597343681650404 29.117455580554953 21.47635018269996 24-25 21.611119707405763 27.684349452808814 29.159086657091077 21.545444182694347 26-27 21.561331245402503 27.911177103586944 29.076901033082347 21.45059061792821 28-29 21.497031283722855 27.8909727457335 29.1949949579356 21.417001012608043 30-31 21.78247334031512 27.715406978552558 29.10858120282826 21.393538478304063 32-33 21.601505657657956 27.835587105574227 29.03122243901085 21.53168479775697 34-35 21.73192103549006 27.86328775742628 29.001850141332223 21.40294106575144 36-37 21.696451414197792 27.815635642464336 29.019735905149325 21.46817703818855 38-39 21.525745787738973 27.908136276434643 29.12595097133816 21.440166964488228 40-41 21.77292629565596 27.772264959839553 28.990075865446236 21.46473287905825 42-43 21.680428678110943 27.83991096582244 28.86265664442996 21.617003711636656 44-45 21.765170294732254 27.878727372090033 28.741918753972577 21.614183579205132 46-47 21.77577390128682 27.862271500757718 28.55976571217956 21.80218888577591 48-49 21.73672910838286 27.95803906756651 28.59478562042373 21.7104462036269 50-51 21.74739854038795 28.038998176925894 28.470496436024867 21.743106846661288 52-53 21.876459124777227 27.97178406941856 28.431791015283093 21.71996579052112 54-55 21.85822643465693 27.90833224528106 28.44108041505121 21.792360905010792 56-57 21.877108019072757 27.97221883171357 28.386172233934648 21.764500915279026 58-59 21.825536025666132 28.02626242468581 28.444600030212875 21.703601519435185 60-61 21.873247515678226 28.013527977260566 28.446718067532533 21.666506439528675 62-63 21.84763033564913 28.072888747345935 28.388346516490735 21.691134400514198 64-65 21.8406263435305 27.989408307851438 28.35333659300569 21.816628755612374 66-67 21.913295641084314 27.99418197581068 28.275870116788088 21.816652266316925 68-69 21.836296654988242 27.99998981078714 28.340991540241678 21.82272199398294 70-71 21.8609922434175 27.830556780782413 28.379153139748407 21.92929783605168 72-73 21.926084446867634 27.847044416304783 28.327139145130353 21.899731991697227 74-75 21.831631993797647 27.952997383802398 28.256150749366927 21.959219873033028 76-77 21.95258816417712 27.90695178797369 28.183351272133887 21.95710877571531 78-79 21.9216374711075 27.92809427298495 28.178771212238846 21.971497043668712 80-81 21.90494629728979 27.929441108535524 28.180201874769566 21.985410719405117 82-83 21.934398876776452 27.93572580732989 28.222443761464355 21.907431554429305 84-85 22.0808502438544 27.865072601660128 28.13912853278897 21.9149486216965 86-87 21.933814834087013 27.92413972382973 28.168460867162835 21.973584574920427 88-89 21.99523116572212 27.90835398460475 28.141463390477757 21.954951459195374 90-91 22.00151203151189 27.908083536619948 28.168515715817975 21.921888716050184 92-93 22.044751707603496 27.9236957026335 28.10976470140692 21.921787888356082 94-95 21.997506665350055 27.966843150808263 28.1025280409389 21.933122142902782 96-97 22.010322722671944 28.12671352834018 28.167309022175946 21.69565472681193 98-99 23.095431566830722 30.00794133232884 28.45021234906435 18.44641475177609 100 21.924591326318783 30.98779234116605 22.431282897041736 24.656333435473428 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 641.0 1 767.5 2 1408.5 3 2159.0 4 2802.0 5 3728.5 6 4495.0 7 5613.0 8 6853.5 9 7368.0 10 7444.5 11 7527.0 12 8249.0 13 10112.5 14 13836.0 15 18029.0 16 20495.0 17 21182.5 18 20578.0 19 19113.5 20 17806.5 21 17630.5 22 19566.5 23 23997.5 24 31070.5 25 41284.0 26 54592.0 27 69332.0 28 84364.0 29 100648.5 30 117227.5 31 134048.5 32 151651.5 33 168330.5 34 185366.0 35 201098.0 36 216102.5 37 231150.5 38 242274.5 39 250542.5 40 260113.5 41 268007.5 42 272635.5 43 277272.5 44 280070.5 45 281001.0 46 279208.5 47 275181.0 48 269610.5 49 261126.5 50 250949.5 51 238558.5 52 224108.0 53 208747.0 54 192054.5 55 174715.5 56 157622.0 57 140346.5 58 123124.0 59 105699.0 60 86773.0 61 68720.5 62 53439.0 63 40535.0 64 29886.5 65 21725.5 66 15856.0 67 11686.0 68 8562.5 69 6101.0 70 4438.0 71 3204.0 72 2226.0 73 1496.0 74 974.0 75 627.0 76 405.0 77 231.5 78 129.5 79 67.5 80 40.5 81 29.0 82 19.5 83 14.0 84 9.0 85 6.5 86 5.0 87 5.5 88 5.5 89 4.0 90 2.5 91 1.0 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0026958998059850776 3 0.0 4 0.0 5 0.005421754054258878 6 1.6474943258797695E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 8.380469027424475E-5 44-45 4.593681238333964E-5 46-47 0.0 48-49 0.0 50-51 1.55778332417876E-5 52-53 8.690084120797179E-4 54-55 0.002266560232775736 56-57 0.0024458557586249066 58-59 0.0017120865987735408 60-61 0.003933421513540544 62-63 0.001740604202398746 64-65 0.001816000701105985 66-67 2.3665044631866156E-4 68-69 1.9721018258622583E-4 70-71 1.986104879247306E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 9.364090568462442E-5 80-81 3.25974208234383E-4 82-83 8.643371800083305E-6 84-85 0.0 86-87 0.0 88-89 0.0 90-91 2.6752142735165827E-5 92-93 2.518085474432934E-4 94-95 0.0 96-97 0.0 98-99 9.917986188609154E-6 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 66.0 20-21 254.0 22-23 394.0 24-25 430.0 26-27 912.0 28-29 2103.0 30-31 6436.0 32-33 9013.0 34-35 13265.0 36-37 21844.0 38-39 26057.0 40-41 26147.0 42-43 30201.0 44-45 37400.0 46-47 38269.0 48-49 36281.0 50-51 33102.0 52-53 32674.0 54-55 35690.0 56-57 37934.0 58-59 37670.0 60-61 36871.0 62-63 36858.0 64-65 39356.0 66-67 41990.0 68-69 42733.0 70-71 43279.0 72-73 40305.0 74-75 41438.0 76-77 43110.0 78-79 44748.0 80-81 44528.0 82-83 42715.0 84-85 42744.0 86-87 44292.0 88-89 46653.0 90-91 47407.0 92-93 48017.0 94-95 61560.0 96-97 206974.0 98-99 474071.0 100-101 4781015.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.30311067178243 #Duplication Level Percentage of deduplicated Percentage of total 1 90.63160703453686 79.12421219297666 2 6.857745700791254 11.974050637502382 3 1.5021723471156394 3.9343295600498354 4 0.5241180258403916 1.8302853606007932 5 0.19799399612840224 0.8642745878173183 6 0.10329937510113207 0.541101406606806 7 0.06069800407271711 0.3709387196981706 8 0.03665223246203643 0.2559883125600851 9 0.020388383404792768 0.160197236352662 >10 0.06431210370951942 0.8142075267049245 >50 6.09443130203948E-4 0.036717473879266695 >100 3.544355084324618E-4 0.06531811127806642 >500 4.891819862812981E-5 0.028378873973110036 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.497722114436154E-5 0.0 0.0 0.0 3 0.0 1.497722114436154E-5 0.0 0.0 0.0 4 0.0 4.493166343308462E-5 0.0 0.0 0.0 5 1.497722114436154E-5 4.493166343308462E-5 0.0 0.0 0.0 6 4.493166343308462E-5 4.493166343308462E-5 0.0 0.0 0.0 7 4.493166343308462E-5 4.493166343308462E-5 0.0 0.0 0.0 8 4.493166343308462E-5 4.493166343308462E-5 0.0 0.0 0.0 9 4.493166343308462E-5 5.990888457744616E-5 0.0 0.0 1.497722114436154E-5 10-11 7.48861057218077E-5 5.990888457744616E-5 0.0 1.497722114436154E-5 2.246583171654231E-5 12-13 8.986332686616924E-5 6.739749514962694E-5 0.0 2.995444228872308E-5 3.7443052860903846E-5 14-15 9.735193743835E-5 1.1232915858271155E-4 0.0 2.995444228872308E-5 6.739749514962693E-5 16-17 1.0484054801053079E-4 1.1981776915489232E-4 0.0 3.7443052860903846E-5 8.986332686616924E-5 18-19 1.0484054801053079E-4 1.3479499029925388E-4 0.0 4.493166343308462E-5 8.986332686616924E-5 20-21 1.0484054801053079E-4 1.572608220157962E-4 0.0 4.493166343308462E-5 8.986332686616924E-5 22-23 1.2730637972707307E-4 1.722380431601577E-4 0.0 5.990888457744616E-5 1.0484054801053079E-4 24-25 1.572608220157962E-4 2.2465831716542313E-4 0.0 7.48861057218077E-5 1.0484054801053079E-4 26-27 1.6474943258797695E-4 2.546127594541462E-4 0.0 8.237471629398847E-5 1.0484054801053079E-4 28-29 1.6474943258797695E-4 2.546127594541462E-4 0.0 2.6958998059850776E-4 1.1981776915489232E-4 30-31 1.6474943258797695E-4 2.8456720174286926E-4 0.0 6.889521726406308E-4 1.3479499029925385E-4 32-33 1.7972665373233848E-4 2.8456720174286926E-4 0.0 0.001887129864189554 1.497722114436154E-4 34-35 1.8721526430451926E-4 2.9954442288723077E-4 0.0 0.003609510295791131 1.722380431601577E-4 36-37 1.9470387487670004E-4 3.2201025460377314E-4 0.0 0.0064327164815032815 1.947038748767E-4 38-39 1.9470387487670004E-4 3.3698747574813464E-4 0.0 0.010633827012496693 2.0968109602106157E-4 40-41 2.246583171654231E-4 3.5945330746467696E-4 0.0 0.015291742788393133 2.1716970659324233E-4 42-43 2.3963553830978464E-4 3.744305286090385E-4 0.0 0.019942169953717392 2.3963553830978464E-4 44-45 2.6210137002632695E-4 4.3433941318648465E-4 0.0 0.024952050426506327 2.6210137002632695E-4 46-47 2.8456720174286926E-4 4.942482977639309E-4 0.0 0.030898007220817855 2.770785911706885E-4 48-49 2.8456720174286926E-4 4.942482977639309E-4 0.0 0.03722588315431061 3.294988651759539E-4 50-51 2.8456720174286926E-4 5.242027400526539E-4 0.0 0.04374097435210788 3.294988651759539E-4 52-53 3.070330334594116E-4 5.242027400526539E-4 0.0 0.050128759170178075 3.294988651759539E-4 54-55 3.1452164403159233E-4 5.391799611970155E-4 0.0 0.05555051322443695 3.3698747574813464E-4 56-57 3.294988651759539E-4 5.54157182341377E-4 0.0 0.05943710211139877 3.4447608632031545E-4 58-59 3.5945330746467696E-4 5.54157182341377E-4 0.0 0.06381045068555234 3.6694191803685776E-4 60-61 3.744305286090385E-4 5.54157182341377E-4 0.0 0.06738251792848257 3.744305286090385E-4 62-63 3.744305286090385E-4 5.691344034857385E-4 0.0 0.07081230157054136 3.894077497534001E-4 64-65 3.744305286090385E-4 6.290432880631847E-4 0.0 0.07468391323635883 3.9689636032558083E-4 66-67 3.744305286090385E-4 6.664863409240885E-4 0.0 0.07898237570479058 4.043849708977616E-4 68-69 3.894077497534001E-4 7.263952255015347E-4 0.0 0.08254695433714863 4.043849708977616E-4 70-71 4.043849708977616E-4 7.338838360737155E-4 0.0 0.0857970113254751 4.043849708977616E-4 72-73 4.043849708977616E-4 7.338838360737155E-4 0.0 0.08881492138606394 4.1936219204212314E-4 74-75 4.268508026143039E-4 7.638382783624385E-4 0.0 0.09091173234627456 4.268508026143039E-4 76-77 4.56805244903027E-4 8.162585523677039E-4 0.0 0.09300854330648517 4.418280237586654E-4 78-79 4.6429385547520777E-4 8.237471629398848E-4 0.0 0.0943564932094777 4.493166343308462E-4 80-81 4.717824660473885E-4 8.237471629398848E-4 0.0 0.09473092373808674 4.493166343308462E-4 82-83 4.867596871917501E-4 8.237471629398848E-4 0.0 0.09508288843497924 4.6429385547520777E-4 84-85 5.242027400526539E-4 8.387243840842463E-4 0.0 0.0952176834252785 4.6429385547520777E-4 86-87 5.242027400526539E-4 8.537016052286078E-4 0.0 0.09528508092042812 4.6429385547520777E-4 88 5.242027400526539E-4 8.986332686616924E-4 0.0 0.09530005814157248 4.792710766195693E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7620 0.0 42.391693 1 GTATCAA 13135 0.0 34.483196 1 TCAACGC 15245 0.0 29.335592 4 ATCAACG 15350 0.0 29.106339 3 CAACGCA 15670 0.0 28.567966 5 AACGCAG 16290 0.0 27.586363 6 TATCAAC 16915 0.0 26.90696 2 ACGCAGA 18820 0.0 23.807936 7 CGCAGAG 19080 0.0 23.483507 8 GTACATG 17390 0.0 19.963411 1 TACATGG 17280 0.0 19.9381 2 ACATGGG 17430 0.0 19.13658 3 GCAGAGT 23420 0.0 19.094261 9 AGAGTAC 20565 0.0 18.89624 10-11 GAGTACT 13375 0.0 17.865685 12-13 CATGGGG 12145 0.0 17.417973 4 CAGAGTA 22565 0.0 16.958862 10-11 AGTACTT 14925 0.0 15.980884 12-13 GTACTTT 15310 0.0 15.564915 14-15 GTGGTAT 4295 0.0 14.714895 1 >>END_MODULE