##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139434_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6968155 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.539475370453154 31.0 18.0 33.0 18.0 33.0 2 30.18565660494062 32.0 29.0 33.0 25.0 33.0 3 31.800287881081864 33.0 31.0 33.0 29.0 33.0 4 31.606078223001642 33.0 31.0 33.0 29.0 34.0 5 32.67329458084672 33.0 33.0 33.0 32.0 34.0 6 36.412335115966854 38.0 37.0 38.0 34.0 38.0 7 37.029092492919574 38.0 38.0 38.0 36.0 38.0 8 37.199830084147095 38.0 38.0 38.0 36.0 38.0 9 37.24158963168873 38.0 38.0 38.0 36.0 38.0 10-11 37.294419326206146 38.0 38.0 38.0 36.5 38.0 12-13 37.31039701326965 38.0 38.0 38.0 37.0 38.0 14-15 37.33127413210527 38.0 38.0 38.0 37.0 38.0 16-17 37.341457602478705 38.0 38.0 38.0 37.0 38.0 18-19 37.34376136868367 38.0 38.0 38.0 37.0 38.0 20-21 37.30658754187071 38.0 38.0 38.0 37.0 38.0 22-23 37.31802763759349 38.0 38.0 38.0 37.0 38.0 24-25 37.33853192846546 38.0 38.0 38.0 37.0 38.0 26-27 37.31338812346017 38.0 38.0 38.0 37.0 38.0 28-29 37.28981834276125 38.0 38.0 38.0 37.0 38.0 30-31 37.28760456743268 38.0 38.0 38.0 37.0 38.0 32-33 37.22616074035163 38.0 38.0 38.0 37.0 38.0 34-35 37.23628573630506 38.0 38.0 38.0 37.0 38.0 36-37 37.23490846718815 38.0 38.0 38.0 37.0 38.0 38-39 37.22875663588536 38.0 38.0 38.0 37.0 38.0 40-41 37.220408157368176 38.0 38.0 38.0 37.0 38.0 42-43 37.19632795291601 38.0 38.0 38.0 37.0 38.0 44-45 37.17648975883081 38.0 38.0 38.0 36.0 38.0 46-47 37.15433535592362 38.0 38.0 38.0 36.0 38.0 48-49 37.11697639986882 38.0 38.0 38.0 36.0 38.0 50-51 37.090216485877036 38.0 38.0 38.0 36.0 38.0 52-53 37.059047142577654 38.0 38.0 38.0 36.0 38.0 54-55 37.03651346635692 38.0 38.0 38.0 36.0 38.0 56-57 37.00613216720167 38.0 38.0 38.0 36.0 38.0 58-59 37.01146666850158 38.0 38.0 38.0 36.0 38.0 60-61 37.035576808556115 38.0 38.0 38.0 36.0 38.0 62-63 37.04173060568016 38.0 38.0 38.0 36.0 38.0 64-65 37.04078326007635 38.0 38.0 38.0 36.0 38.0 66-67 37.04477557868788 38.0 38.0 38.0 36.0 38.0 68-69 37.045816340353454 38.0 38.0 38.0 36.0 38.0 70-71 37.03324765882224 38.0 38.0 38.0 36.0 38.0 72-73 37.013332745030404 38.0 38.0 38.0 36.0 38.0 74-75 37.008069617607724 38.0 38.0 38.0 36.0 38.0 76-77 37.005702593700946 38.0 38.0 38.0 36.0 38.0 78-79 36.9791056952148 38.0 38.0 38.0 36.0 38.0 80-81 36.95492426854611 38.0 38.0 38.0 36.0 38.0 82-83 36.95479302370422 38.0 38.0 38.0 36.0 38.0 84-85 36.90519177919545 38.0 38.0 38.0 35.5 38.0 86-87 36.89122256544703 38.0 38.0 38.0 35.0 38.0 88-89 36.893957538492586 38.0 38.0 38.0 35.0 38.0 90-91 36.874858208101664 38.0 38.0 38.0 35.0 38.0 92-93 36.87876715554425 38.0 38.0 38.0 35.0 38.0 94-95 36.82579976346996 38.0 38.0 38.0 35.0 38.0 96-97 36.79931067553019 38.0 38.0 38.0 35.0 38.0 98-99 36.873271436399364 38.0 38.0 38.0 35.0 38.0 100 35.28330701574799 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 10.0 19 38.0 20 96.0 21 219.0 22 598.0 23 1608.0 24 3557.0 25 7130.0 26 12565.0 27 20354.0 28 30763.0 29 44122.0 30 60557.0 31 80278.0 32 104825.0 33 141112.0 34 208276.0 35 363377.0 36 1031020.0 37 4857647.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.61352108269693 22.303550939954693 14.64997549566564 24.43295248168274 2 13.636362984025558 22.34345200585022 41.35494506771941 22.66523994240481 3 17.13825252165028 27.106543984742014 31.033738486012435 24.721465007595267 4 12.37905873218951 18.962767045222158 39.59049418389803 29.0676800386903 5 13.179847561903221 38.14801547458514 35.745582687937045 12.9265542755746 6 28.979873527152744 38.880900143165974 19.349823252588642 12.78940307709264 7 25.379831533598207 33.07106400474731 24.5046070301249 17.044497431529578 8 23.687317518051763 37.1180750141178 21.99034034116635 17.20426712666409 9 25.207404255502354 16.81575682515673 22.070820755278834 35.90601816406208 10-11 23.474714612404572 27.17468253791714 29.768475299415698 19.582127550262587 12-13 24.350541857923655 24.799283311005567 29.791429725659086 21.058745105411692 14-15 21.751432050521263 26.168160725471807 27.22117978144861 24.859227442558325 16-17 21.33397577981546 29.022065381725863 28.026134608084924 21.61782423037375 18-19 21.34935287748335 28.399203232419485 29.491572733384945 20.759871156712215 20-21 22.17579307484001 27.571781025330562 29.206347885132566 21.046078014696864 22-23 21.939873551245558 27.476986550575916 29.01487137698371 21.56826852119482 24-25 21.733054766343017 27.584231734362252 29.078914811546763 21.60379868774797 26-27 21.683317492036053 27.747587132637157 28.9888635345202 21.580231840806587 28-29 21.619695997631858 27.76867297816863 29.086733887459605 21.52489713673991 30-31 21.885249904485036 27.58745723371434 28.983699258574084 21.543593603226537 32-33 21.76567527089326 27.684097450611333 28.921602849208057 21.628624429287353 34-35 21.827068727692097 27.736989899986426 28.90082284271581 21.53511852960567 36-37 21.820888885359675 27.690864478442002 28.912668569073162 21.57557806712516 38-39 21.679797154470013 27.80429220724075 28.984304282207567 21.53160635608167 40-41 21.89306434617386 27.669507469158383 28.86310002981216 21.574328154855596 42-43 21.807649334232952 27.708073397499238 28.736476515442966 21.747800752824848 44-45 21.896168415348672 27.739652009121972 28.637090336546535 21.72708923898282 46-47 21.892754759065504 27.799993538935635 28.45435742238425 21.85289427961461 48-49 21.86883588841911 27.865191391154713 28.51816877700158 21.747803943424596 50-51 21.858396716224362 27.929064040883322 28.394071035481073 21.818468207411243 52-53 22.040684707361606 27.83652053481063 28.292917373520872 21.82987738430689 54-55 21.993025206174043 27.777156131656326 28.32847427992763 21.901344382242005 56-57 21.96588634027159 27.86774250857888 28.318475350017287 21.847895801132243 58-59 21.981818041150127 27.894528123405493 28.320347733659023 21.80330610178536 60-61 22.015688239602206 27.844351077361907 28.340908915699803 21.799051767336085 62-63 22.032257949406723 27.923385392028926 28.261537036568722 21.78281962199563 64-65 21.991131616645394 27.842601808806712 28.236105093465426 21.930161481082475 66-67 22.026688393482143 27.880337038115876 28.190535221948192 21.902439346453786 68-69 21.95918459770326 27.852104457584492 28.249446495399837 21.939264449312407 70-71 21.98571920715509 27.71639004899027 28.242122763386618 22.055767980468023 72-73 22.043859719599887 27.74919053549191 28.181617322138752 22.025332422769452 74-75 21.935717490667056 27.859975295565135 28.140390456303777 22.06391675746403 76-77 22.075326421149214 27.77285253749059 28.09903523713911 22.052785804221088 78-79 22.03549506697085 27.80179606662428 28.057481428117647 22.10522743828722 80-81 22.03005414490419 27.846595594940027 28.048619176975258 22.074731083180524 82-83 22.053380190462004 27.84886071286578 28.091726402770817 22.006032693901396 84-85 22.13949118575518 27.79945689369242 28.001527307692758 22.05952461285964 86-87 22.04739341637862 27.840103958701484 28.064676669237027 22.04782595568287 88-89 22.110898053228738 27.827419694188766 28.014399367782566 22.047282884799927 90-91 22.0965069491395 27.84578918832546 28.022239800272853 22.035464062262193 92-93 22.145859889744703 27.82125608028108 28.007295684405243 22.025588345568977 94-95 22.071757151385558 27.8711280980665 28.003086200555927 22.05402854999202 96-97 22.144195516152724 27.981940658853578 28.070420518697915 21.80344330629579 98-99 23.2184419527418 29.88653745330861 28.305913978752983 18.58910661519661 100 22.061933825630963 30.836149213614334 22.26250828547857 24.839408675276132 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 800.0 1 932.0 2 1541.5 3 2238.0 4 2924.0 5 3944.0 6 4757.0 7 5845.5 8 7007.0 9 7596.5 10 7698.0 11 7832.0 12 8769.0 13 10625.5 14 14098.5 15 18126.5 16 20750.5 17 21612.0 18 21010.5 19 19693.0 20 18532.0 21 18398.5 22 20421.0 23 24817.0 24 31797.0 25 42166.5 26 55686.5 27 71121.5 28 87636.5 29 105276.0 30 122121.5 31 139148.5 32 157325.5 33 174646.0 34 191609.5 35 207164.5 36 222457.0 37 237542.0 38 248857.5 39 257168.0 40 266554.5 41 275803.0 42 282466.0 43 287537.0 44 290359.0 45 292350.5 46 291871.5 47 287646.5 48 282447.0 49 275090.5 50 266079.5 51 253858.5 52 238466.0 53 222481.5 54 206131.5 55 189552.0 56 172315.5 57 153725.0 58 134594.5 59 115548.5 60 94971.0 61 75733.5 62 59555.0 63 45604.0 64 33932.0 65 24531.0 66 17801.0 67 13479.5 68 10213.0 69 7484.5 70 5305.0 71 3687.5 72 2613.0 73 1780.5 74 1138.0 75 684.0 76 412.0 77 247.5 78 146.0 79 83.0 80 49.0 81 30.5 82 20.0 83 13.5 84 7.5 85 3.0 86 3.0 87 3.5 88 3.0 89 3.0 90 3.0 91 2.5 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.003042412231071209 3 0.0 4 0.0 5 0.004922393373855777 6 2.7266902070921214E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 6.577565983401294E-5 44-45 7.3464768170537E-6 46-47 0.0 48-49 0.0 50-51 1.4965705711220098E-5 52-53 0.0010081693315190298 54-55 0.002141039582904306 56-57 0.002496608646395118 58-59 0.001577964265237409 60-61 0.0038082040432642814 62-63 0.0015824790402978288 64-65 0.0016081492887140083 66-67 1.8863686130899207E-4 68-69 1.266780486893414E-4 70-71 1.994096835256653E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 9.038003902610084E-5 80-81 3.064593345028484E-4 82-83 8.349055300218253E-6 84-85 0.0 86-87 0.0 88-89 0.0 90-91 5.176779246084931E-5 92-93 2.437460211726499E-4 94-95 0.0 96-97 0.0 98-99 9.610989435984853E-6 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 39.0 20-21 171.0 22-23 294.0 24-25 444.0 26-27 953.0 28-29 2285.0 30-31 7337.0 32-33 10094.0 34-35 14706.0 36-37 24293.0 38-39 29104.0 40-41 29024.0 42-43 33567.0 44-45 41307.0 46-47 42918.0 48-49 40291.0 50-51 36886.0 52-53 36012.0 54-55 39140.0 56-57 41555.0 58-59 41366.0 60-61 40797.0 62-63 40319.0 64-65 42530.0 66-67 45888.0 68-69 46738.0 70-71 45661.0 72-73 44363.0 74-75 44928.0 76-77 47530.0 78-79 48653.0 80-81 48632.0 82-83 46264.0 84-85 46614.0 86-87 48775.0 88-89 50640.0 90-91 51453.0 92-93 52555.0 94-95 65191.0 96-97 216188.0 98-99 489320.0 100-101 4933330.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.38042589485043 #Duplication Level Percentage of deduplicated Percentage of total 1 89.99593453739404 77.73887154145176 2 7.202497485962662 12.443096006880886 3 1.6841102751781813 4.364224884713552 4 0.5552668557474684 1.918567499390432 5 0.2311828435731078 0.9984836243713818 6 0.12817398722902565 0.6643034163290614 7 0.06566607724173626 0.39705846032897263 8 0.038706795722483436 0.2674807599626476 9 0.02586547077904719 0.20108433436784143 >10 0.07140240682890875 0.9054153177298968 >50 8.57539305279397E-4 0.04789913122662956 >100 3.113290560094614E-4 0.042809759792892484 >500 2.439598211950091E-5 0.010705263454076675 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.4351001089958532E-5 0.0 0.0 0.0 3 0.0 1.4351001089958532E-5 0.0 0.0 0.0 4 0.0 8.61060065397512E-5 0.0 1.4351001089958532E-5 0.0 5 0.0 8.61060065397512E-5 0.0 1.4351001089958532E-5 0.0 6 4.30530032698756E-5 8.61060065397512E-5 0.0 1.4351001089958532E-5 1.4351001089958532E-5 7 4.30530032698756E-5 8.61060065397512E-5 0.0 1.4351001089958532E-5 1.4351001089958532E-5 8 5.740400435983413E-5 8.61060065397512E-5 0.0 1.4351001089958532E-5 1.4351001089958532E-5 9 5.740400435983413E-5 1.4351001089958534E-4 0.0 2.8702002179917065E-5 4.30530032698756E-5 10-11 7.893050599477194E-5 1.4351001089958534E-4 0.0 4.30530032698756E-5 4.30530032698756E-5 12-13 8.61060065397512E-5 1.4351001089958534E-4 0.0 5.022850381485486E-5 4.30530032698756E-5 14-15 1.0045700762970973E-4 2.080895158043987E-4 0.0 5.740400435983413E-5 6.45795049048134E-5 16-17 1.8656301416946093E-4 2.367915179843158E-4 0.0 5.740400435983413E-5 7.175500544979267E-5 18-19 1.8656301416946093E-4 2.5114251907427433E-4 0.0 1.0763250817468899E-4 7.175500544979267E-5 20-21 1.8656301416946093E-4 2.583180196192536E-4 0.0 1.291590098096268E-4 8.610600653975121E-5 22-23 2.0091401525941947E-4 2.870200217991707E-4 0.0 1.291590098096268E-4 1.0045700762970973E-4 24-25 2.1526501634937798E-4 3.372485256140255E-4 0.0 1.291590098096268E-4 1.0045700762970973E-4 26-27 2.2961601743933652E-4 3.444240261590048E-4 0.0 1.5786101198954388E-4 1.0045700762970973E-4 28-29 2.2961601743933652E-4 3.444240261590048E-4 0.0 2.9419552234414995E-4 1.0045700762970973E-4 30-31 2.2961601743933652E-4 3.874770294288804E-4 0.0 7.606030577678023E-4 1.0045700762970973E-4 32-33 2.583180196192536E-4 3.874770294288804E-4 0.0 0.0019230341460544434 1.0045700762970973E-4 34-35 2.870200217991707E-4 4.448810337887145E-4 0.0 0.0033007302506904623 1.0045700762970973E-4 36-37 3.0137102288912916E-4 5.166360392385072E-4 0.0 0.0056614699299886405 1.0045700762970973E-4 38-39 3.0137102288912916E-4 5.166360392385072E-4 0.0 0.009220518200298358 1.0045700762970973E-4 40-41 3.3007302506904624E-4 5.596890425083828E-4 0.0 0.013116814996222099 1.0045700762970973E-4 42-43 3.3007302506904624E-4 5.596890425083828E-4 0.0 0.017156621803045426 1.0045700762970973E-4 44-45 3.5159952670398405E-4 6.314440479581755E-4 0.0 0.02164130964365747 1.0763250817468899E-4 46-47 3.7312602833892186E-4 7.247255550429059E-4 0.0 0.027324306075281045 1.2198350926464753E-4 48-49 3.7312602833892186E-4 7.319010555878852E-4 0.0 0.03302882900853957 1.291590098096268E-4 50-51 3.874770294288804E-4 7.893050599477193E-4 0.0 0.03879075594615791 1.291590098096268E-4 52-53 4.0182803051883894E-4 7.893050599477193E-4 0.0 0.043942765337453026 1.506855114445646E-4 54-55 4.0182803051883894E-4 7.964805604926986E-4 0.0 0.04933156624673246 1.7938751362448166E-4 56-57 4.0182803051883894E-4 8.180070621276364E-4 0.0 0.05416785361404848 1.937385147144402E-4 58-59 4.0182803051883894E-4 8.180070621276364E-4 0.0 0.058810402466650064 2.080895158043987E-4 60-61 4.233545321537767E-4 8.180070621276364E-4 0.0 0.06371844483941588 2.1526501634937798E-4 62-63 4.5923203487867304E-4 8.180070621276364E-4 0.0 0.06864801371381665 2.1526501634937798E-4 64-65 4.5923203487867304E-4 9.112885692123668E-4 0.0 0.07324750956314835 2.1526501634937798E-4 66-67 4.664075354236523E-4 9.471660719372632E-4 0.0 0.07758151189231582 2.1526501634937798E-4 68-69 4.735830359686316E-4 9.615170730272217E-4 0.0 0.08231016675145716 2.1526501634937798E-4 70-71 5.238115397834865E-4 9.68692573572201E-4 0.0 0.08611318204029617 2.1526501634937798E-4 72-73 5.883910446882999E-4 9.758680741171802E-4 0.0 0.0892201737762722 2.4396701852929506E-4 74-75 5.883910446882999E-4 9.830435746621595E-4 0.0 0.09190381098009445 2.4396701852929506E-4 76-77 6.099175463232376E-4 0.001047623079566973 0.0 0.09456592168228176 2.4396701852929506E-4 78-79 6.314440479581754E-4 0.001105027083926807 0.0 0.09630239281416673 2.4396701852929506E-4 80-81 6.314440479581754E-4 0.001105027083926807 0.0 0.09679032685122532 2.583180196192536E-4 82-83 6.386195485031547E-4 0.001105027083926807 0.0 0.09710604887520441 2.870200217991707E-4 84-85 6.457950490481339E-4 0.0011193780850167656 0.0 0.0973141383910088 2.870200217991707E-4 86-87 6.457950490481339E-4 0.0011193780850167656 0.0 0.09740741989809354 2.870200217991707E-4 88 6.601460501380925E-4 0.0011624310882866412 0.0 0.09741459539863852 2.870200217991707E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7345 0.0 48.17631 1 GTATCAA 12370 0.0 34.589066 1 TCAACGC 14890 0.0 28.675943 4 ATCAACG 14900 0.0 28.597914 3 CAACGCA 15250 0.0 27.999002 5 AACGCAG 15780 0.0 27.085773 6 TATCAAC 16175 0.0 26.750175 2 ACGCAGA 18150 0.0 23.524824 7 CGCAGAG 18610 0.0 22.91981 8 GCAGAGT 23060 0.0 18.68677 9 AGAGTAC 20095 0.0 18.676315 10-11 GAGTACT 13480 0.0 18.338865 12-13 GTACATG 16280 0.0 18.077105 1 TACATGG 16540 0.0 17.660555 2 CAGAGTA 22525 0.0 17.34197 10-11 ACATGGG 16980 0.0 16.480522 3 TATACCG 495 0.0 15.924839 5 AGTACTT 15260 0.0 15.783618 12-13 GTACTTT 15810 0.0 15.608642 14-15 TATACTG 4185 0.0 15.591883 5 >>END_MODULE