##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139433_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6479729 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.866038070419304 30.0 18.0 33.0 18.0 33.0 2 29.894490957878023 32.0 28.0 33.0 25.0 33.0 3 31.670383745986907 33.0 31.0 33.0 29.0 33.0 4 31.525519971591404 33.0 31.0 33.0 29.0 33.0 5 32.64215988045179 33.0 33.0 33.0 31.0 34.0 6 36.39233585231728 38.0 37.0 38.0 34.0 38.0 7 37.01414704226056 38.0 38.0 38.0 36.0 38.0 8 37.18102269400464 38.0 38.0 38.0 36.0 38.0 9 37.21854463357958 38.0 38.0 38.0 36.0 38.0 10-11 37.27675185181356 38.0 38.0 38.0 36.5 38.0 12-13 37.295499163622424 38.0 38.0 38.0 37.0 38.0 14-15 37.314462765340956 38.0 38.0 38.0 37.0 38.0 16-17 37.325015984464784 38.0 38.0 38.0 37.0 38.0 18-19 37.32537487293064 38.0 38.0 38.0 37.0 38.0 20-21 37.2880489580628 38.0 38.0 38.0 37.0 38.0 22-23 37.300046292622824 38.0 38.0 38.0 37.0 38.0 24-25 37.320778474106774 38.0 38.0 38.0 37.0 38.0 26-27 37.29447634641385 38.0 38.0 38.0 37.0 38.0 28-29 37.27200410014589 38.0 38.0 38.0 37.0 38.0 30-31 37.268508809505576 38.0 38.0 38.0 37.0 38.0 32-33 37.20551970620506 38.0 38.0 38.0 36.5 38.0 34-35 37.21753571947788 38.0 38.0 38.0 37.0 38.0 36-37 37.21308804806448 38.0 38.0 38.0 36.5 38.0 38-39 37.20272076866442 38.0 38.0 38.0 36.5 38.0 40-41 37.198529985536794 38.0 38.0 38.0 36.5 38.0 42-43 37.1747258180028 38.0 38.0 38.0 36.0 38.0 44-45 37.152297404279714 38.0 38.0 38.0 36.0 38.0 46-47 37.13013652990149 38.0 38.0 38.0 36.0 38.0 48-49 37.09194055824587 38.0 38.0 38.0 36.0 38.0 50-51 37.06488535687943 38.0 38.0 38.0 36.0 38.0 52-53 37.03132629775164 38.0 38.0 38.0 36.0 38.0 54-55 37.00414793188861 38.0 38.0 38.0 36.0 38.0 56-57 36.97245340629634 38.0 38.0 38.0 36.0 38.0 58-59 36.97604909378691 38.0 38.0 38.0 36.0 38.0 60-61 36.999330066836364 38.0 38.0 38.0 36.0 38.0 62-63 37.00636842082916 38.0 38.0 38.0 36.0 38.0 64-65 37.00226090487899 38.0 38.0 38.0 36.0 38.0 66-67 37.0044386614107 38.0 38.0 38.0 36.0 38.0 68-69 37.00237104733239 38.0 38.0 38.0 36.0 38.0 70-71 36.989850565396225 38.0 38.0 38.0 36.0 38.0 72-73 36.9675281228432 38.0 38.0 38.0 36.0 38.0 74-75 36.96187720751385 38.0 38.0 38.0 36.0 38.0 76-77 36.96082952675373 38.0 38.0 38.0 36.0 38.0 78-79 36.93438660888508 38.0 38.0 38.0 36.0 38.0 80-81 36.90721359658802 38.0 38.0 38.0 35.5 38.0 82-83 36.90548046923046 38.0 38.0 38.0 35.0 38.0 84-85 36.85384155593387 38.0 38.0 38.0 35.0 38.0 86-87 36.83967380979901 38.0 38.0 38.0 35.0 38.0 88-89 36.84184655135196 38.0 38.0 38.0 35.0 38.0 90-91 36.81874350100627 38.0 38.0 38.0 35.0 38.0 92-93 36.822692581625915 38.0 38.0 38.0 35.0 38.0 94-95 36.769965684845104 38.0 38.0 38.0 35.0 38.0 96-97 36.7465554055363 38.0 38.0 38.0 35.0 38.0 98-99 36.822187190062834 38.0 38.0 38.0 35.0 38.0 100 35.18393345323467 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 16.0 19 54.0 20 95.0 21 228.0 22 602.0 23 1603.0 24 3642.0 25 7116.0 26 12326.0 27 19647.0 28 29963.0 29 43096.0 30 58700.0 31 77207.0 32 101810.0 33 136802.0 34 201940.0 35 351151.0 36 998894.0 37 4434833.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.868636172901674 22.860631980133736 14.756774550293692 24.513957296670892 2 13.475729288106653 22.51660535056666 41.54561636956215 22.462048991764537 3 17.166381495275495 27.09279971430904 31.08725688991006 24.65356190050541 4 12.260451015775505 19.24106702610557 39.775444312563074 28.723037645555856 5 13.162603163089317 38.13170150129062 35.80151016486802 12.904185170752033 6 28.69764662525333 39.12649875395773 19.493431502244853 12.682423118544083 7 25.24449710782658 33.01767712816385 24.583250318030274 17.1545754459793 8 23.400453938737254 37.31751744555984 22.130724911489356 17.151303704213554 9 25.043454749419304 17.04801234742996 22.113918653079473 35.79461425007126 10-11 23.321476870406155 27.297985764528114 29.891250081600635 19.489287283465096 12-13 24.24211722434688 24.901481219353464 29.80636998862144 21.050031567678214 14-15 21.54439637830533 26.26064299911308 27.36833592886369 24.8266246937179 16-17 21.215432003406313 29.077589510302047 28.18839337262407 21.518585113667562 18-19 21.215185079499467 28.488737723444917 29.594401247336116 20.701675949719505 20-21 22.018564897352448 27.66646428941819 29.345992251430943 20.96897856179842 22-23 21.720594581146678 27.636480677686944 29.136468639631868 21.506456101534514 24-25 21.545591053617823 27.738950566379796 29.214927367596864 21.500531012405517 26-27 21.53292704630317 27.898129107034453 29.148385525364695 21.420558321297687 28-29 21.442118265195962 27.933770094667302 29.228191561378285 21.39592007875845 30-31 21.720967876460758 27.772952776945438 29.14992632499174 21.35615302160207 32-33 21.658756798318265 27.806071701793645 29.058419631884764 21.476751868003323 34-35 21.669009176168924 27.870827281538563 29.06071008740525 21.39945345488726 36-37 21.651145356127486 27.849123143113125 29.050104178326343 21.449627322433045 38-39 21.48748121994051 27.930852138454977 29.148272927956487 21.433393713648027 40-41 21.7439954909753 27.779072185548493 29.038574412129805 21.438357911346404 42-43 21.691932704570043 27.836109808062975 28.8793916978416 21.592565789525377 44-45 21.720935074421273 27.924105845273512 28.76992276060083 21.585036319704386 46-47 21.743112842402784 27.9137800215267 28.585052922258058 21.758054213812457 48-49 21.724582862810717 27.990720635670524 28.59880031326771 21.685896188251053 50-51 21.704040894806734 28.044910680743406 28.497175046730018 21.753873377719845 52-53 21.863551641746582 27.995227932686127 28.45190277410174 21.689317651465547 54-55 21.859635553207905 27.93238537529095 28.441140060654398 21.766839010846756 56-57 21.84919653327395 28.033045781184068 28.352253046327675 21.76550463921431 58-59 21.78023747981731 28.064574395951837 28.486998939945735 21.668189184285115 60-61 21.890409388178682 28.101620542166888 28.407631449397762 21.60033862025667 62-63 21.825240387521063 28.196346451467956 28.36379763307542 21.614615527935555 64-65 21.79531214291635 28.078029604657118 28.3608021023743 21.765856150052233 66-67 21.837856184451095 28.102801562546986 28.27434079837758 21.785001454624336 68-69 21.82905801222438 28.082301764456552 28.353477110926946 21.73516311239213 70-71 21.82863106192965 27.92126721180172 28.40132260439139 21.848779121877243 72-73 21.891256590319884 27.905343007630645 28.328522964937726 21.87487743711174 74-75 21.851788178641947 27.95472614368315 28.28057798441152 21.912907693263385 76-77 21.903822009145827 27.9282883017115 28.249790198144982 21.91809949099769 78-79 21.864001808998708 27.928590482617537 28.229522010956455 21.9778856974273 80-81 21.853020045375846 27.990075113290487 28.199192536801437 21.957712304532233 82-83 21.93807500083227 27.977293706344536 28.209324239114743 21.875307053708454 84-85 22.053822655299342 27.94211276315679 28.13514195607557 21.868922625468297 86-87 21.945026248151986 27.94438902347688 28.202851434603087 21.907733293768047 88-89 21.94638943428447 27.952048601982682 28.160612446438183 21.940949517294666 90-91 21.998985848123205 27.977551115173156 28.142325306963528 21.88113772974011 92-93 22.01362226415913 27.95120384104167 28.16708104918062 21.868092845618577 94-95 21.97456257479361 28.02523920267725 28.117997907147657 21.882200315381482 96-97 22.010023626284774 28.158764957194172 28.1801824710909 21.65102894543015 98-99 23.091387634932563 30.06158863646663 28.45375804439176 18.393265684209048 100 21.92809795130694 31.00242727271342 22.442529980595317 24.62694479538433 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 633.0 1 787.0 2 1411.5 3 2045.5 4 2666.5 5 3691.0 6 4481.0 7 5425.0 8 6461.5 9 6884.0 10 6922.0 11 7166.5 12 8101.0 13 9939.5 14 13538.0 15 17679.0 16 20215.0 17 20955.0 18 20315.5 19 19018.0 20 17753.0 21 17568.0 22 19561.0 23 23855.0 24 30648.5 25 40255.5 26 52778.0 27 67083.5 28 81742.0 29 97696.0 30 113983.5 31 130170.5 32 147222.0 33 163777.0 34 181047.0 35 197134.5 36 212533.0 37 226942.5 38 237755.0 39 247625.0 40 256467.5 41 263640.5 42 268306.0 43 272910.0 44 275687.0 45 275889.5 46 273426.5 47 269275.0 48 265475.5 49 257574.5 50 247090.5 51 234623.0 52 219741.5 53 203053.0 54 185576.0 55 168399.5 56 150917.5 57 133356.0 58 115911.0 59 98287.5 60 80591.5 61 64058.0 62 49828.0 63 37827.5 64 27731.0 65 20036.0 66 14570.5 67 10897.5 68 8144.0 69 5920.0 70 4344.5 71 3076.0 72 2112.5 73 1457.5 74 992.5 75 622.5 76 371.0 77 221.5 78 149.0 79 96.5 80 55.0 81 35.0 82 22.0 83 11.0 84 6.0 85 5.5 86 5.5 87 5.0 88 2.5 89 0.0 90 0.5 91 1.0 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002947654138004846 3 0.0 4 0.0 5 0.004691554230122895 6 2.0062567431446593E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 7.857570533481894E-5 44-45 1.579666781929686E-5 46-47 0.0 48-49 0.0 50-51 8.042685426927457E-6 52-53 0.001148284717357399 54-55 0.00201656838606226 56-57 0.002544234294691214 58-59 0.0017206238669300784 60-61 0.004042865642816466 62-63 0.0015255189306895896 64-65 0.0014681637910371704 66-67 1.6049836262104638E-4 68-69 1.3615337609740685E-4 70-71 9.430997889599881E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 7.066396212128975E-5 80-81 2.84900310265341E-4 82-83 0.0 84-85 9.042449780494532E-6 86-87 0.0 88-89 0.0 90-91 1.8536861429453387E-5 92-93 2.3374410275315958E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 50.0 20-21 170.0 22-23 300.0 24-25 375.0 26-27 899.0 28-29 2040.0 30-31 6703.0 32-33 9152.0 34-35 13578.0 36-37 22288.0 38-39 26976.0 40-41 26613.0 42-43 31019.0 44-45 38288.0 46-47 39149.0 48-49 36706.0 50-51 34029.0 52-53 33441.0 54-55 36504.0 56-57 38616.0 58-59 38032.0 60-61 37681.0 62-63 37509.0 64-65 39914.0 66-67 42965.0 68-69 43721.0 70-71 44826.0 72-73 40984.0 74-75 41718.0 76-77 43736.0 78-79 44651.0 80-81 44288.0 82-83 42660.0 84-85 42924.0 86-87 44378.0 88-89 46436.0 90-91 46905.0 92-93 48067.0 94-95 60509.0 96-97 201690.0 98-99 456018.0 100-101 4593221.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.26725747064508 #Duplication Level Percentage of deduplicated Percentage of total 1 91.95218119855126 82.08319034038485 2 6.108168457196653 10.905188926852931 3 1.1919794278222697 3.1921420344936826 4 0.3813468077508923 1.3616713469242996 5 0.14947756941439902 0.6671726337500689 6 0.08025093788682246 0.42982686807622356 7 0.04135954261956929 0.2584437057922447 8 0.027421768388483016 0.1958292847228088 9 0.014263697342055149 0.11459530288049334 >10 0.05269350094770192 0.7031553448466777 >50 5.402355755570676E-4 0.03465839610898279 >100 3.1685650432499037E-4 0.05412581516675237 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.0865488356071684E-5 0.0 0.0 0.0 3 0.0 3.0865488356071684E-5 0.0 0.0 0.0 4 0.0 1.0802920924625088E-4 0.0 1.5432744178035842E-5 0.0 5 0.0 1.0802920924625088E-4 0.0 1.5432744178035842E-5 0.0 6 0.0 1.0802920924625088E-4 0.0 3.0865488356071684E-5 1.5432744178035842E-5 7 0.0 1.0802920924625088E-4 0.0 3.0865488356071684E-5 1.5432744178035842E-5 8 0.0 1.0802920924625088E-4 0.0 3.0865488356071684E-5 1.5432744178035842E-5 9 0.0 1.2346195342428673E-4 0.0 4.6298232534107525E-5 1.5432744178035842E-5 10-11 0.0 1.2346195342428673E-4 0.0 5.4014604623125446E-5 1.5432744178035842E-5 12-13 0.0 1.3117832551330465E-4 0.0 6.173097671214337E-5 1.5432744178035842E-5 14-15 0.0 1.6204381386937633E-4 0.0 8.488009297919714E-5 1.5432744178035842E-5 16-17 1.5432744178035842E-5 1.6976018595839425E-4 0.0 1.157455813352688E-4 1.5432744178035842E-5 18-19 1.5432744178035842E-5 1.774765580474122E-4 0.0 1.543274417803584E-4 1.5432744178035842E-5 20-21 1.5432744178035842E-5 2.0062567431446593E-4 0.0 1.774765580474122E-4 1.5432744178035842E-5 22-23 1.5432744178035842E-5 2.3920753475955555E-4 0.0 1.9290930222544802E-4 2.3149116267053763E-5 24-25 1.5432744178035842E-5 2.546402789375914E-4 0.0 2.2377479058151967E-4 3.0865488356071684E-5 26-27 1.5432744178035842E-5 2.623566510266093E-4 0.0 2.546402789375914E-4 3.0865488356071684E-5 28-29 1.5432744178035842E-5 2.623566510266093E-4 0.0 3.703858602728602E-4 3.0865488356071684E-5 30-31 2.3149116267053763E-5 2.9322213938268095E-4 0.0 6.79040743833577E-4 3.0865488356071684E-5 32-33 3.0865488356071684E-5 2.9322213938268095E-4 0.0 0.001342648743489118 3.0865488356071684E-5 34-35 6.173097671214337E-5 3.240876277387526E-4 0.0 0.0026621483707111827 3.0865488356071684E-5 36-37 6.173097671214337E-5 3.7810223236187806E-4 0.0 0.004838165299814236 3.0865488356071684E-5 38-39 6.173097671214337E-5 4.0125134862893186E-4 0.0 0.008773515065213375 3.0865488356071684E-5 40-41 6.173097671214337E-5 4.321168369850035E-4 0.0 0.012191867900648315 3.0865488356071684E-5 42-43 6.173097671214337E-5 4.4754958116303934E-4 0.0 0.01584171189875379 3.0865488356071684E-5 44-45 6.173097671214337E-5 4.8613144160812897E-4 0.0 0.019977687338467394 3.0865488356071684E-5 46-47 6.173097671214337E-5 5.169969299642007E-4 0.0 0.024839001754548687 3.0865488356071684E-5 48-49 6.173097671214337E-5 5.247133020532186E-4 0.0 0.0297543307752531 3.0865488356071684E-5 50-51 9.259646506821505E-5 5.632951624983081E-4 0.0 0.03456934695880028 3.0865488356071684E-5 52-53 9.259646506821505E-5 5.710115345873261E-4 0.0 0.03963128704919604 3.8581860445089604E-5 54-55 9.259646506821505E-5 5.710115345873261E-4 0.0 0.04447716872109929 4.6298232534107525E-5 56-57 9.259646506821505E-5 5.710115345873261E-4 0.0 0.048566845928278785 4.6298232534107525E-5 58-59 9.259646506821505E-5 6.018770229433977E-4 0.0 0.05279541783306061 4.6298232534107525E-5 60-61 9.259646506821505E-5 6.095933950324157E-4 0.0 0.057108869830821626 4.6298232534107525E-5 62-63 9.259646506821505E-5 6.481752554775053E-4 0.0 0.06082044480563925 4.6298232534107525E-5 64-65 9.259646506821505E-5 6.79040743833577E-4 0.0 0.06450887066418981 4.6298232534107525E-5 66-67 1.0802920924625088E-4 6.86757115922595E-4 0.0 0.06869114433643753 4.6298232534107525E-5 68-69 1.0802920924625088E-4 7.021898601006307E-4 0.0 0.0728116870319731 4.6298232534107525E-5 70-71 1.0802920924625088E-4 7.176226042786666E-4 0.0 0.07649239651843465 4.6298232534107525E-5 72-73 1.2346195342428673E-4 7.407717205457204E-4 0.0 0.0793937524239054 6.173097671214337E-5 74-75 1.2346195342428673E-4 7.484880926347383E-4 0.0 0.08149260563211826 6.173097671214337E-5 76-77 1.3117832551330465E-4 7.562044647237562E-4 0.0 0.08352972786361898 6.173097671214337E-5 78-79 1.3889469760232256E-4 7.639208368127742E-4 0.0 0.08497268944426534 6.173097671214337E-5 80-81 1.3889469760232256E-4 7.793535809908099E-4 0.0 0.08549740274631856 6.944734880116128E-5 82-83 1.3889469760232256E-4 8.102190693468816E-4 0.0 0.08587550497868043 9.259646506821505E-5 84-85 1.3889469760232256E-4 8.179354414358995E-4 0.0 0.08612242888552901 9.259646506821505E-5 86-87 1.6204381386937633E-4 8.333681856139354E-4 0.0 0.08622274172268624 9.259646506821505E-5 88 1.6976018595839425E-4 9.259646506821505E-4 0.0 0.08625360721104232 9.259646506821505E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6495 0.0 47.858788 1 GTATCAA 11440 0.0 34.634193 1 TCAACGC 13825 0.0 28.183655 4 ATCAACG 13845 0.0 28.0797 3 CAACGCA 14240 0.0 27.27006 5 TATCAAC 15030 0.0 26.245104 2 AACGCAG 14925 0.0 26.133986 6 CGCAGAG 17020 0.0 22.942862 8 ACGCAGA 17005 0.0 22.885868 7 GCAGAGT 20980 0.0 18.591503 9 AGAGTAC 18950 0.0 18.423145 10-11 GTACATG 15340 0.0 18.351355 1 TACATGG 15085 0.0 18.023071 2 ACATGGG 15070 0.0 17.401474 3 GAGTACT 13040 0.0 17.121225 12-13 GTGGTAT 3735 0.0 16.8793 1 CAGAGTA 20715 0.0 16.874554 10-11 TGGTATC 3615 0.0 15.74409 2 AGTACTT 14585 0.0 15.532673 12-13 GTACTTT 14775 0.0 15.081202 14-15 >>END_MODULE