##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139429_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9971591 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.881557015324837 32.0 30.0 33.0 18.0 33.0 2 31.436354339041785 33.0 31.0 33.0 28.0 33.0 3 31.079103023780256 33.0 31.0 33.0 28.0 33.0 4 32.101854959755165 33.0 33.0 33.0 30.0 34.0 5 32.21103282314728 33.0 33.0 33.0 31.0 34.0 6 35.721522974618594 38.0 36.0 38.0 31.0 38.0 7 36.80732362568822 38.0 37.0 38.0 35.0 38.0 8 36.71119192514013 38.0 38.0 38.0 34.0 38.0 9 37.06318640626155 38.0 38.0 38.0 36.0 38.0 10-11 37.18558738520262 38.0 38.0 38.0 36.0 38.0 12-13 37.23875066676922 38.0 38.0 38.0 36.0 38.0 14-15 37.28764361675083 38.0 38.0 38.0 37.0 38.0 16-17 37.29959988330849 38.0 38.0 38.0 37.0 38.0 18-19 37.326336088192946 38.0 38.0 38.0 37.0 38.0 20-21 37.29944134479875 38.0 38.0 38.0 37.0 38.0 22-23 37.32818921174197 38.0 38.0 38.0 37.0 38.0 24-25 37.35303994315217 38.0 38.0 38.0 37.0 38.0 26-27 37.330709117647956 38.0 38.0 38.0 37.0 38.0 28-29 37.313483785488344 38.0 38.0 38.0 37.0 38.0 30-31 37.3089295063768 38.0 38.0 38.0 37.0 38.0 32-33 37.24131228003924 38.0 38.0 38.0 37.0 38.0 34-35 37.249231732342125 38.0 38.0 38.0 37.0 38.0 36-37 37.24795083509437 38.0 38.0 38.0 37.0 38.0 38-39 37.21641811051718 38.0 38.0 38.0 37.0 38.0 40-41 37.22480013671152 38.0 38.0 38.0 37.0 38.0 42-43 37.19389443080716 38.0 38.0 38.0 37.0 38.0 44-45 37.1617418299724 38.0 38.0 38.0 36.0 38.0 46-47 37.12604049112872 38.0 38.0 38.0 36.0 38.0 48-49 37.0807026456357 38.0 38.0 38.0 36.0 38.0 50-51 37.05499128443282 38.0 38.0 38.0 36.0 38.0 52-53 37.028161945870075 38.0 38.0 38.0 36.0 38.0 54-55 37.0057875708853 38.0 38.0 38.0 36.0 38.0 56-57 36.97695088445951 38.0 38.0 38.0 36.0 38.0 58-59 36.98386702976835 38.0 38.0 38.0 36.0 38.0 60-61 37.00617174688642 38.0 38.0 38.0 36.0 38.0 62-63 37.015316556262505 38.0 38.0 38.0 36.0 38.0 64-65 37.014034084344644 38.0 38.0 38.0 36.0 38.0 66-67 37.02061900101184 38.0 38.0 38.0 36.0 38.0 68-69 37.02154557160256 38.0 38.0 38.0 36.0 38.0 70-71 37.015000825401685 38.0 38.0 38.0 36.0 38.0 72-73 36.99333691865812 38.0 38.0 38.0 36.0 38.0 74-75 36.993996124744015 38.0 38.0 38.0 36.0 38.0 76-77 36.99367324493768 38.0 38.0 38.0 36.0 38.0 78-79 36.971602267526166 38.0 38.0 38.0 36.0 38.0 80-81 36.953863315965506 38.0 38.0 38.0 36.0 38.0 82-83 36.95271914281202 38.0 38.0 38.0 36.0 38.0 84-85 36.90249820380696 38.0 38.0 38.0 35.5 38.0 86-87 36.89254238025754 38.0 38.0 38.0 35.0 38.0 88-89 36.89903329359089 38.0 38.0 38.0 35.0 38.0 90-91 36.88079854206346 38.0 38.0 38.0 35.0 38.0 92-93 36.888448332590414 38.0 38.0 38.0 35.0 38.0 94-95 36.83674207806541 38.0 38.0 38.0 35.0 38.0 96-97 36.81210319333054 38.0 38.0 38.0 35.0 38.0 98-99 36.89117199926025 38.0 38.0 38.0 35.0 38.0 100 35.28174856008782 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 6.0 18 38.0 19 61.0 20 103.0 21 240.0 22 694.0 23 2079.0 24 4714.0 25 9771.0 26 17493.0 27 29002.0 28 45266.0 29 66040.0 30 90642.0 31 118809.0 32 154001.0 33 209055.0 34 307437.0 35 534089.0 36 1441062.0 37 6940989.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.745362600612076 20.520787505223588 14.619131490651792 25.114718403512537 2 13.357326791644322 20.49839093665448 44.168244774593234 21.97603749710796 3 16.71533659974622 26.95925855763639 31.466192305721325 24.85921253689607 4 11.284227361511318 18.481554247461613 41.08813728922496 29.146081101802107 5 12.230039777330392 38.02215142584409 36.76252927738686 12.985279519438661 6 28.034606026460455 39.715308279809435 19.32518469029614 12.924901003433966 7 24.95993868982392 33.6451825992462 24.12516718746286 17.26971152346702 8 23.466405711987186 37.23192216768618 21.862970512930183 17.438701607396453 9 25.16672615232614 16.92071004516732 22.020608346250864 35.89195545625567 10-11 23.339620527957873 27.36462516362735 29.780824343878525 19.51492996453625 12-13 24.390290375928977 24.763646042040836 29.6335659976427 21.212497584387485 14-15 21.5952298885905 26.066687853523074 27.675418095266846 24.662664162619585 16-17 20.84145849945109 29.2972004166637 28.162983219026934 21.698357864858274 18-19 20.713640380958264 28.34242298947079 30.21531869889168 20.728617930679267 20-21 21.95897776305351 27.545274153080413 29.849428550755253 20.64631953311082 22-23 21.464434919848205 27.516017973064873 29.786204049024267 21.23334305806265 24-25 21.253327985588772 27.607415371967374 30.097160555248735 21.042096087195116 26-27 21.219533638486148 27.846313478539958 29.868984433134106 21.06516844983979 28-29 20.95446078423995 28.084125113568355 29.901760554017898 21.059653548173802 30-31 21.772922322445048 27.612407214436587 29.801655417375354 20.81301504574301 32-33 21.165565482028484 28.03711056543096 29.67213191455601 21.125192037984544 34-35 21.23524344346384 28.034537126048708 29.870251246041967 20.85996818444548 36-37 21.221154873710667 27.78944955551932 29.948171299522365 21.04122427124765 38-39 21.01768954101522 27.74166808454658 30.157883091550442 21.08275928288776 40-41 21.34694487756998 27.668708815004393 30.023243787097815 20.96110252032781 42-43 21.449504113512397 27.568119154680527 29.827657837292133 21.154718894514946 44-45 21.311836415891936 28.08872704426862 29.55420578010792 21.045230759731528 46-47 21.528097649342357 27.539876661312316 29.205322870279467 21.726702819065867 48-49 21.50306064086547 27.61958492638078 29.450582260517923 21.42677217223582 50-51 21.15581551964025 27.81960994393577 29.371858951872753 21.65271558455122 52-53 21.36359861648272 27.86021135707022 29.336625752207386 21.439564274239682 54-55 21.4595996835142 27.71801585713757 29.164962179491592 21.65742227985664 56-57 21.688075297982 28.027339266373325 28.7755791841334 21.50900625151128 58-59 21.274467007600386 28.230858974572428 29.357112322779205 21.137561695047978 60-61 21.49675237790803 28.528612196840225 28.759479321615245 21.215156103636502 62-63 21.29161365211674 28.596944308933992 28.747553028993778 21.36388900995549 64-65 21.16323411844116 28.610653922078395 28.83255075269754 21.393561206782906 66-67 21.47460651423092 28.735335792559276 28.44264444286111 21.347413250348694 68-69 21.441565068383376 28.463921744270632 28.787390232992376 21.307122954353616 70-71 21.441158158039215 27.92241667475766 28.87870183333117 21.757723333871954 72-73 21.611632337963886 27.854285998328336 29.04484618217438 21.4892354815334 74-75 21.36300190565344 28.068722925631757 28.91907898193211 21.649196186782692 76-77 21.373151809699145 28.16715432578876 28.693029351646427 21.766664512865667 78-79 21.557080015648015 28.205405433047197 28.643731338685953 21.59378321261884 80-81 21.46123802279797 28.036208181667316 28.705937508495943 21.79661628703877 82-83 21.642152974560577 27.919834221189987 28.891334634624165 21.546678169625267 84-85 22.06601371491089 27.892312718842692 28.51565615301437 21.526017413232047 86-87 21.312731256077974 28.19271939244511 28.665667679490525 21.828881671986395 88-89 21.685283630270767 28.006251386251563 28.68365137508471 21.624813608392962 90-91 21.84490942624431 27.961400178828978 28.69548056176687 21.49820983315984 92-93 21.793942009811673 28.11765005350413 28.51656383435178 21.571844102332424 94-95 21.54029128327756 28.226805998813642 28.544085318061 21.688817399847792 96-97 21.50322937774191 28.383886082301157 28.71283661267734 21.400047927279594 98-99 22.52177285320968 30.29191377027871 28.928059043041326 18.258254333470283 100 21.606240049907687 31.359833086795447 22.78581647341754 24.24811038987933 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1694.0 1 1739.5 2 2796.0 3 4202.5 4 5603.0 5 7889.5 6 9549.0 7 11299.5 8 13656.0 9 15048.0 10 15283.5 11 15738.5 12 17834.5 13 22067.5 14 29918.0 15 38936.0 16 45552.5 17 48615.0 18 47204.5 19 43208.5 20 39584.0 21 37236.0 22 38723.0 23 45825.5 24 57264.0 25 73897.0 26 99304.5 27 128248.5 28 148545.5 29 169524.0 30 190186.0 31 207282.5 32 235070.5 33 266989.5 34 298194.0 35 324197.0 36 354532.5 37 383357.0 38 387034.5 39 387348.5 40 399717.0 41 406911.0 42 408331.0 43 426071.0 44 442121.5 45 437759.0 46 425621.5 47 415287.0 48 403775.0 49 387491.5 50 370632.5 51 353015.0 52 333036.5 53 311264.5 54 289967.5 55 265120.0 56 238050.0 57 210451.5 58 182764.0 59 160337.5 60 135487.5 61 103425.5 62 74333.5 63 53126.0 64 38085.5 65 27138.0 66 19671.5 67 14505.0 68 10798.5 69 8096.5 70 6100.5 71 4249.5 72 2819.5 73 1842.5 74 1217.0 75 785.5 76 476.5 77 271.5 78 176.5 79 110.5 80 71.5 81 47.5 82 29.0 83 15.0 84 8.5 85 8.0 86 7.0 87 4.0 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0026274643635102964 3 0.0 4 0.0 5 0.005866666613181387 6 3.309401679230526E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 8.767069032159414E-5 44-45 4.677654754880236E-5 46-47 0.0 48-49 0.0 50-51 1.601026706406284E-5 52-53 0.0011240897763712134 54-55 0.0021410086741746872 56-57 0.002574304062038651 58-59 0.0017035002188363795 60-61 0.004115109168285276 62-63 0.0016322689817737817 64-65 0.0015954998304922876 66-67 2.3426223451660904E-4 68-69 2.2524403458500864E-4 70-71 2.2199062498539534E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 8.522878083394658E-5 80-81 3.3214793426128084E-4 82-83 1.2427568248631897E-5 84-85 0.0 86-87 0.0 88-89 0.0 90-91 3.236371010582092E-5 92-93 2.3557072078424107E-4 94-95 0.0 96-97 0.0 98-99 7.244757765728297E-6 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 104.0 20-21 232.0 22-23 541.0 24-25 827.0 26-27 2228.0 28-29 6048.0 30-31 18019.0 32-33 23236.0 34-35 31698.0 36-37 51356.0 38-39 63304.0 40-41 61739.0 42-43 71365.0 44-45 84534.0 46-47 87132.0 48-49 81398.0 50-51 74042.0 52-53 70636.0 54-55 75428.0 56-57 78816.0 58-59 77516.0 60-61 78363.0 62-63 76276.0 64-65 83123.0 66-67 91725.0 68-69 95250.0 70-71 111421.0 72-73 81198.0 74-75 78465.0 76-77 81522.0 78-79 83795.0 80-81 83997.0 82-83 78359.0 84-85 78520.0 86-87 79861.0 88-89 83508.0 90-91 84327.0 92-93 83638.0 94-95 98145.0 96-97 284218.0 98-99 652400.0 100-101 6543281.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 76.99335428732348 #Duplication Level Percentage of deduplicated Percentage of total 1 86.44097225350723 66.5538040165498 2 7.978137876765477 12.285271921978385 3 2.616435318851676 6.043443944226399 4 1.19025298712682 3.6656627971760134 5 0.614271889168688 2.3647426595754153 6 0.3495232798782506 1.6146581831600084 7 0.2313419868159458 1.2468256886717404 8 0.1448244849385215 0.8920418302680585 9 0.10641069066837706 0.7373624405930227 >10 0.3221385668602553 3.588527116979413 >50 0.0036013983802488086 0.18155896928730195 >100 0.0016806558037271537 0.2329267699305301 >500 1.3620422157888112E-4 0.06411637546596846 >1k 2.451663118889623E-4 0.40061539038741867 >5k 2.7240701320965227E-5 0.12844189575053608 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 2.00569798741244E-5 0.0 4 0.0 0.0 0.0 4.01139597482488E-5 2.00569798741244E-5 5 0.0 0.0 0.0 4.01139597482488E-5 2.00569798741244E-5 6 0.0 0.0 0.0 4.01139597482488E-5 3.00854698111866E-5 7 0.0 0.0 0.0 1.203418792447464E-4 3.00854698111866E-5 8 0.0 0.0 0.0 1.203418792447464E-4 3.00854698111866E-5 9 0.0 0.0 0.0 2.105982886783062E-4 5.0142449685311E-5 10-11 0.0 0.0 0.0 2.105982886783062E-4 5.0142449685311E-5 12-13 0.0 0.0 0.0 2.206267786153684E-4 5.0142449685311E-5 14-15 0.0 5.0142449685311E-6 0.0 2.206267786153684E-4 6.51851845909043E-5 16-17 5.0142449685311E-6 1.00284899370622E-5 0.0 2.306552685524306E-4 7.01994295594354E-5 18-19 1.00284899370622E-5 1.00284899370622E-5 0.0 2.757834732692105E-4 7.01994295594354E-5 20-21 1.00284899370622E-5 1.00284899370622E-5 0.0 3.660398827027703E-4 7.01994295594354E-5 22-23 1.00284899370622E-5 1.00284899370622E-5 0.0 3.760683726398325E-4 8.52421644650287E-5 24-25 1.00284899370622E-5 1.00284899370622E-5 0.0 4.7133902704192337E-4 1.00284899370622E-4 26-27 1.00284899370622E-5 1.00284899370622E-5 0.0 6.51851845909043E-4 1.00284899370622E-4 28-29 1.00284899370622E-5 1.00284899370622E-5 0.0 0.001007863238674751 1.00284899370622E-4 30-31 1.00284899370622E-5 1.00284899370622E-5 0.0 0.0020959543968459998 1.00284899370622E-4 32-33 1.00284899370622E-5 1.00284899370622E-5 0.0 0.004116695119164033 1.00284899370622E-4 34-35 1.00284899370622E-5 1.00284899370622E-5 0.0 0.006714074012863143 1.103133893076842E-4 36-37 1.00284899370622E-5 1.00284899370622E-5 0.0 0.010514871699009717 1.103133893076842E-4 38-39 1.00284899370622E-5 1.00284899370622E-5 0.0 0.016973219218477775 1.103133893076842E-4 40-41 1.00284899370622E-5 1.00284899370622E-5 0.0 0.023877834540145096 1.103133893076842E-4 42-43 1.00284899370622E-5 1.00284899370622E-5 0.0 0.030962962680679544 1.153276342762153E-4 44-45 1.00284899370622E-5 1.00284899370622E-5 0.0 0.03858461503284681 1.203418792447464E-4 46-47 1.00284899370622E-5 1.00284899370622E-5 0.0 0.04706871751960144 1.203418792447464E-4 48-49 1.00284899370622E-5 1.00284899370622E-5 0.0 0.05556786274126165 1.403988591188708E-4 50-51 1.00284899370622E-5 1.00284899370622E-5 0.0 0.06330985697267366 1.403988591188708E-4 52-53 1.00284899370622E-5 1.00284899370622E-5 0.0 0.07139783410691433 1.454131040874019E-4 54-55 1.00284899370622E-5 1.00284899370622E-5 0.0 0.07841777706285788 1.50427349055933E-4 56-57 1.00284899370622E-5 1.00284899370622E-5 0.0 0.08335680835686102 1.50427349055933E-4 58-59 1.00284899370622E-5 1.00284899370622E-5 0.0 0.08885743508733962 1.604558389929952E-4 60-61 1.00284899370622E-5 1.00284899370622E-5 0.0 0.09437310455272382 1.704843289300574E-4 62-63 1.00284899370622E-5 1.00284899370622E-5 0.0 0.09943247772597172 1.704843289300574E-4 64-65 1.00284899370622E-5 1.00284899370622E-5 0.0 0.10464227824827553 1.704843289300574E-4 66-67 1.00284899370622E-5 1.00284899370622E-5 0.0 0.10938575398850595 1.754985738985885E-4 68-69 1.00284899370622E-5 1.00284899370622E-5 0.0 0.11446518414162796 1.805128188671196E-4 70-71 1.00284899370622E-5 1.00284899370622E-5 0.0 0.11911338922745629 2.00569798741244E-4 72-73 1.00284899370622E-5 1.00284899370622E-5 0.0 0.12294928662838257 2.105982886783062E-4 74-75 1.00284899370622E-5 1.00284899370622E-5 0.0 0.12561185070667258 2.105982886783062E-4 76-77 1.00284899370622E-5 1.00284899370622E-5 0.0 0.12859031221798006 2.105982886783062E-4 78-79 1.00284899370622E-5 1.00284899370622E-5 0.0 0.13058598171545543 2.105982886783062E-4 80-81 1.00284899370622E-5 1.00284899370622E-5 0.0 0.13126290478620714 2.256410235838995E-4 82-83 1.00284899370622E-5 1.00284899370622E-5 0.0 0.13178438626293437 2.50712248426555E-4 84-85 1.00284899370622E-5 1.00284899370622E-5 0.0 0.13202005577645534 2.50712248426555E-4 86-87 1.00284899370622E-5 1.00284899370622E-5 0.0 0.1321454119006686 2.557264933950861E-4 88 1.00284899370622E-5 1.00284899370622E-5 0.0 0.13215544039060567 2.607407383636172E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13125 0.0 52.472748 1 GTATCAA 25075 0.0 40.178925 1 CTTATAC 9545 0.0 34.7819 1 ATCAACG 30595 0.0 32.385704 3 CAACGCA 31460 0.0 31.481707 5 TCAACGC 31695 0.0 31.342411 4 TATCAAC 32470 0.0 30.910099 2 TATACAC 12235 0.0 30.338566 3 AACGCAG 33175 0.0 30.020039 6 ACGCAGA 36655 0.0 27.007193 7 CGCAGAG 37250 0.0 26.564362 8 ACATCTC 14440 0.0 23.550446 8 GCAGAGT 42305 0.0 23.359983 9 ACACATC 14755 0.0 23.163202 6 TATGCCG 8770 0.0 21.971249 42-43 GTGGTAT 6225 0.0 21.634132 1 TTATACA 16540 0.0 21.540836 2 TGCCGTC 9150 0.0 21.306562 44-45 TACACAT 17980 0.0 21.118784 5 CTCGTAT 8865 0.0 21.10139 38-39 >>END_MODULE