##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139422_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10287951 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.434300280007164 32.0 18.0 33.0 18.0 33.0 2 28.642120671064628 31.0 27.0 33.0 18.0 33.0 3 30.502253947360362 31.0 29.0 33.0 27.0 33.0 4 31.86751754552486 33.0 31.0 33.0 29.0 33.0 5 32.721871245304335 33.0 33.0 33.0 32.0 34.0 6 36.87312381250649 38.0 37.0 38.0 35.0 38.0 7 36.991566542259 38.0 38.0 38.0 35.0 38.0 8 37.218000941100904 38.0 38.0 38.0 36.0 38.0 9 37.3025902825548 38.0 38.0 38.0 37.0 38.0 10-11 37.30517019375384 38.0 38.0 38.0 36.5 38.0 12-13 37.34599469806962 38.0 38.0 38.0 37.0 38.0 14-15 37.34118489677877 38.0 38.0 38.0 37.0 38.0 16-17 37.35902095567913 38.0 38.0 38.0 37.0 38.0 18-19 37.35999340393437 38.0 38.0 38.0 37.0 38.0 20-21 37.322978176317854 38.0 38.0 38.0 37.0 38.0 22-23 37.340622700541196 38.0 38.0 38.0 37.0 38.0 24-25 37.35533774335196 38.0 38.0 38.0 37.0 38.0 26-27 37.320643829470406 38.0 38.0 38.0 37.0 38.0 28-29 37.297764589058914 38.0 38.0 38.0 37.0 38.0 30-31 37.30062566061369 38.0 38.0 38.0 37.0 38.0 32-33 37.233705994435766 38.0 38.0 38.0 37.0 38.0 34-35 37.23713488058223 38.0 38.0 38.0 37.0 38.0 36-37 37.235788847675565 38.0 38.0 38.0 37.0 38.0 38-39 37.211802530991875 38.0 38.0 38.0 37.0 38.0 40-41 37.223355319982325 38.0 38.0 38.0 37.0 38.0 42-43 37.1953552245881 38.0 38.0 38.0 37.0 38.0 44-45 37.17085352313492 38.0 38.0 38.0 36.0 38.0 46-47 37.144386050946586 38.0 38.0 38.0 36.0 38.0 48-49 37.102255173736644 38.0 38.0 38.0 36.0 38.0 50-51 37.07779967581316 38.0 38.0 38.0 36.0 38.0 52-53 37.049962889519904 38.0 38.0 38.0 36.0 38.0 54-55 37.024938769348545 38.0 38.0 38.0 36.0 38.0 56-57 36.99304771089322 38.0 38.0 38.0 36.0 38.0 58-59 36.9988213148179 38.0 38.0 38.0 36.0 38.0 60-61 37.0223782571682 38.0 38.0 38.0 36.0 38.0 62-63 37.03219765354109 38.0 38.0 38.0 36.0 38.0 64-65 37.03002764444162 38.0 38.0 38.0 36.0 38.0 66-67 37.03332616527915 38.0 38.0 38.0 36.0 38.0 68-69 37.033995662300114 38.0 38.0 38.0 36.0 38.0 70-71 37.0249888710366 38.0 38.0 38.0 36.0 38.0 72-73 37.00473515769339 38.0 38.0 38.0 36.0 38.0 74-75 37.00504822688796 38.0 38.0 38.0 36.0 38.0 76-77 37.00615357656466 38.0 38.0 38.0 36.0 38.0 78-79 36.98419155781062 38.0 38.0 38.0 36.0 38.0 80-81 36.96157410516366 38.0 38.0 38.0 36.0 38.0 82-83 36.967639310394766 38.0 38.0 38.0 36.0 38.0 84-85 36.919535631820025 38.0 38.0 38.0 35.5 38.0 86-87 36.909606040672166 38.0 38.0 38.0 35.5 38.0 88-89 36.91762062164094 38.0 38.0 38.0 35.5 38.0 90-91 36.89777809986222 38.0 38.0 38.0 35.0 38.0 92-93 36.90645646463677 38.0 38.0 38.0 35.0 38.0 94-95 36.8597287596961 38.0 38.0 38.0 35.0 38.0 96-97 36.83775330489269 38.0 38.0 38.0 35.0 38.0 98-99 36.91319022610593 38.0 38.0 38.0 35.0 38.0 100 35.33969443864708 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 6.0 18 15.0 19 54.0 20 111.0 21 332.0 22 870.0 23 2192.0 24 5026.0 25 10284.0 26 17832.0 27 29703.0 28 46190.0 29 66111.0 30 89402.0 31 117823.0 32 153597.0 33 206061.0 34 304849.0 35 552961.0 36 1695101.0 37 6989431.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.62660747509392 19.161949741012567 13.955315300393636 23.25612748349987 2 13.779719861337203 20.387315287755044 42.7323487845815 23.100616066326253 3 17.8794883451525 26.4711311319426 30.934342513878615 24.715038009026287 4 11.691871394021998 18.60327678465809 40.57531961417779 29.129532207142123 5 12.716513535492016 38.08688322183767 36.183006609644494 13.013596633025825 6 28.48952963474421 39.03257221245728 19.50860721304681 12.969290939751696 7 25.497110697466454 33.17103990590934 23.910069547383102 17.421779849241105 8 23.393317094920064 37.33979681668391 21.907773472093712 17.359112616302312 9 25.07429321932035 17.17119375860169 21.921226102262732 35.83328691981523 10-11 23.4041258555761 27.17211619689868 29.67635149117643 19.74740645634879 12-13 24.479514919929148 24.634084085353827 29.66524626721103 21.221154727505994 14-15 21.65111400705544 26.055159088529873 27.25319648198169 25.040530422433 16-17 21.158931452920022 29.250625318880306 27.91971890223816 21.670724325961505 18-19 20.981092347737658 28.31968192694541 29.77991924728257 20.919306478034354 20-21 21.91911652815519 27.507866010489828 29.52246090517819 21.050556556176794 22-23 21.608651036662323 27.657444929432952 29.35411030633596 21.379793727568767 24-25 21.49491163531679 27.770452857943607 29.542427277204325 21.192208229535282 26-27 21.520177809899682 27.951791673514688 29.336251526556012 21.19177899002962 28-29 21.221410724675422 28.01326204152936 29.419543540166504 21.345783693628714 30-31 21.859079019644252 27.750934212518896 29.350545656413008 21.039441111423844 32-33 21.20034607135894 28.028670306102555 29.386703061025543 21.384280561512966 34-35 21.446127498214334 28.051554129965687 29.474820045139953 21.027498326680025 36-37 21.390030106050794 27.991517465105996 29.346294650832625 21.272157778010577 38-39 21.244989211661245 27.767718137225817 29.59974404007124 21.387548611041698 40-41 21.49045953770475 27.597456444402596 29.57346273299152 21.338621284901137 42-43 21.56530544275497 27.57551499546723 29.44494642573556 21.41423313604224 44-45 21.46955483065685 27.987946124737327 29.18098755815478 21.36151148645104 46-47 21.59817999632756 27.72652567706769 28.866345335710474 21.80894899089428 48-49 21.667813437495326 27.688965636451705 28.93729596830782 21.705924957745147 50-51 21.403216813052172 27.829926824665062 28.974719478155702 21.792136884127064 52-53 21.506502075709832 27.900594877997513 29.001699798750924 21.591203247541728 54-55 21.615053754176802 27.81468086589428 28.84952032790253 21.72074505202639 56-57 21.844548516880682 28.051696680807936 28.485587526135987 21.61816727617539 58-59 21.458461796315447 28.280060653653344 28.943484990979123 21.317992559052087 60-61 21.713442813566118 28.56268459000802 28.4085646264008 21.31530797002506 62-63 21.506918766268186 28.667286895439855 28.37886876510379 21.446925573188167 64-65 21.419881821341676 28.675359502233473 28.428693029267027 21.476065647157828 66-67 21.532055704920086 28.60861865721269 28.337195610299997 21.522130027567226 68-69 21.56332482083266 28.458576361776423 28.455497706292103 21.522601111098815 70-71 21.562344833957987 28.094041651648556 28.569096277010818 21.77451723738264 72-73 21.696847865726106 27.96382618851056 28.72436891314124 21.614957032622094 74-75 21.69072028938769 28.02966268923975 28.601937445170368 21.67767957620219 76-77 21.618868915833954 28.084697236326704 28.491131480881336 21.805302366958003 78-79 21.658989688283476 28.06142859034421 28.48216969012116 21.797412031251156 80-81 21.62113954889303 28.106895722541804 28.45745463539751 21.81451009316766 82-83 21.730045175343214 27.950946719152437 28.688381227851846 21.63062687765251 84-85 21.98082213662081 27.962883087654355 28.394656724785005 21.661638050939832 86-87 21.64399609810959 28.109798650472655 28.487376838798482 21.758828412619277 88-89 21.845347306021022 27.99469560694491 28.423950945735243 21.736006141298827 90-91 21.86473898924898 28.09534373804506 28.41319567039872 21.62672160230724 92-93 21.861154051770118 28.018375925147136 28.437707852188716 21.68276217089403 94-95 21.708392774464 28.18076100460568 28.40190511455054 21.708941106379783 96-97 21.772171157575364 28.273369157589496 28.497217105756235 21.45724257907891 98-99 22.843380160727328 30.17173890847551 28.716856487915816 18.268024442881345 100 21.769436197988764 31.122592259737086 22.637649554265465 24.470321988008685 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 881.0 1 963.0 2 1924.5 3 3185.5 4 4412.0 5 6407.0 6 8063.5 7 9631.5 8 11659.0 9 12943.0 10 12925.5 11 12953.5 12 14432.5 13 17712.5 14 24170.0 15 31687.0 16 37421.0 17 41463.0 18 41982.5 19 38934.5 20 35273.5 21 33015.5 22 34757.5 23 41209.5 24 51488.0 25 65957.0 26 85665.5 27 108987.5 28 131827.5 29 157140.0 30 184206.5 31 208642.0 32 236641.5 33 264887.5 34 290875.0 35 318097.0 36 344986.0 37 370597.0 38 386104.0 39 395171.0 40 408444.5 41 418270.0 42 425062.0 43 447457.5 44 465002.5 45 464502.5 46 454432.0 47 440691.5 48 427984.0 49 409630.0 50 390974.5 51 370563.5 52 346629.0 53 322158.0 54 299557.0 55 274381.5 56 246044.0 57 215185.5 58 184752.5 59 158471.5 60 129505.0 61 100612.0 62 77271.5 63 57941.5 64 42132.5 65 30503.5 66 22750.5 67 17285.5 68 12612.5 69 9079.5 70 6751.0 71 4885.0 72 3438.0 73 2393.0 74 1676.0 75 1133.0 76 716.5 77 419.5 78 249.0 79 157.5 80 112.5 81 74.5 82 43.5 83 22.5 84 14.0 85 14.5 86 13.0 87 10.0 88 5.5 89 2.5 90 1.5 91 1.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 1.0 99 2.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002527228210943073 3 0.0 4 0.0 5 0.0024980678854321916 6 9.720108503627204E-5 7 9.720108503627204E-6 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 6.471820721804157E-5 44-45 2.0042354505659083E-5 46-47 0.0 48-49 0.0 50-51 1.5369092601088284E-5 52-53 0.0011241110370068697 54-55 0.002065619114055962 56-57 0.0026077820082377693 58-59 0.0016107511427384494 60-61 0.0037965148629845206 62-63 0.0016183799247821878 64-65 0.0015119149931444608 66-67 2.3335326966189877E-4 68-69 1.643407700088174E-4 70-71 2.0469773557832532E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 5.7320081007031276E-5 80-81 2.1392419890880156E-4 82-83 1.166402136382153E-5 84-85 0.0 86-87 0.0 88-89 0.0 90-91 3.0208309858959213E-5 92-93 1.829782082102932E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 116.0 20-21 305.0 22-23 563.0 24-25 850.0 26-27 1934.0 28-29 5328.0 30-31 16248.0 32-33 20237.0 34-35 27809.0 36-37 45699.0 38-39 55878.0 40-41 55035.0 42-43 61509.0 44-45 73519.0 46-47 75786.0 48-49 70919.0 50-51 64350.0 52-53 61885.0 54-55 65603.0 56-57 68579.0 58-59 68526.0 60-61 69379.0 62-63 67416.0 64-65 75838.0 66-67 84559.0 68-69 86527.0 70-71 105199.0 72-73 72754.0 74-75 70330.0 76-77 73635.0 78-79 74818.0 80-81 75245.0 82-83 72117.0 84-85 71624.0 86-87 74317.0 88-89 77506.0 90-91 78913.0 92-93 78702.0 94-95 95933.0 96-97 304364.0 98-99 694667.0 100-101 7043430.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.47554304270177 #Duplication Level Percentage of deduplicated Percentage of total 1 86.69273164229617 68.03259193484408 2 8.046301088137911 12.628756947534095 3 2.5534731285406647 6.011555712215259 4 1.0909603381196162 3.4245481988794566 5 0.5652408477088403 2.2178791236934168 6 0.34121197091151134 1.606607682597085 7 0.2096132859406629 1.1514661510211053 8 0.13487527951839037 0.8467528642593501 9 0.09083909139065016 0.6415782323748198 >10 0.2718263750314033 3.0827755872250675 >50 0.0020466098551413367 0.10063358112078662 >100 7.048478112845841E-4 0.12256404605840841 >500 1.2535370187036617E-4 0.06726662421187891 >1k 5.014103589515774E-5 0.06502331396517592 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.720108503627204E-6 0.0 0.0 0.0 3 0.0 1.9440217007254407E-5 0.0 0.0 0.0 4 0.0 2.9160325510881614E-5 0.0 0.0 0.0 5 0.0 7.776086802901763E-5 0.0 9.720108503627204E-6 0.0 6 0.0 7.776086802901763E-5 0.0 9.720108503627204E-6 0.0 7 0.0 7.776086802901763E-5 0.0 9.720108503627204E-6 0.0 8 0.0 7.776086802901763E-5 0.0 1.9440217007254407E-5 0.0 9 0.0 7.776086802901763E-5 0.0 1.9440217007254407E-5 0.0 10-11 0.0 7.776086802901763E-5 0.0 1.9440217007254407E-5 0.0 12-13 0.0 8.262092228083123E-5 0.0 2.9160325510881614E-5 0.0 14-15 0.0 1.4094157330259448E-4 0.0 2.9160325510881614E-5 0.0 16-17 0.0 1.5552173605803526E-4 0.0 2.9160325510881614E-5 0.0 18-19 0.0 1.6524184456166247E-4 0.0 2.9160325510881614E-5 0.0 20-21 0.0 1.7982200731710328E-4 0.0 4.860054251813602E-5 0.0 22-23 0.0 1.992622243243577E-4 0.0 5.3460596769949625E-5 0.0 24-25 0.0 2.284225498352393E-4 0.0 7.290081377720403E-5 0.0 26-27 0.0 2.6244292959793454E-4 0.0 1.1664130204352646E-4 0.0 28-29 0.0 2.8188314660518895E-4 0.0 2.575828753461209E-4 0.0 30-31 0.0 3.5964401463420655E-4 0.0 0.00102547144713267 0.0 32-33 0.0 4.27684774159597E-4 0.0 0.0029014523883327207 0.0 34-35 0.0 5.394660219513099E-4 0.0 0.0051127770729079095 0.0 36-37 0.0 6.852676495057179E-4 0.0 0.008650896568228213 0.0 38-39 0.0 6.901277037575315E-4 0.0 0.013992096190971361 0.0 40-41 0.0 7.678885717865491E-4 0.0 0.019950522703694837 0.0 42-43 0.0 7.970488972974307E-4 0.0 0.025957549758936452 0.0 44-45 0.0 8.359293313119396E-4 0.0 0.03219785941826511 0.0 46-47 0.0 8.602296025710075E-4 0.0 0.03943448019921557 0.0 48-49 0.0 8.699497110746348E-4 0.0 0.046836342824727685 0.0 50-51 0.0 0.0010351915556362974 0.0 0.05401464295465637 0.0 52-53 0.0 0.0011080923694135013 0.0 0.06079441863593635 0.0 54-55 0.0 0.0011178124779171285 0.0 0.06759849458847539 0.0 56-57 0.0 0.0011566929119316374 0.0 0.07212320509691386 0.0 58-59 0.0 0.0011809931831907052 0.0 0.07634173218748806 0.0 60-61 0.0 0.001210153508701587 0.0 0.0806039997663286 0.0 62-63 0.0 0.0012636141054715366 0.0 0.08489542767068001 0.0 64-65 0.0 0.0013219347564932997 0.0 0.0890799343814915 0.0 66-67 0.0 0.0013267948107451135 0.0 0.09340538266560562 0.0 68-69 0.0 0.0013365149192487405 0.0 0.09776485132948243 0.0 70-71 0.0 0.0013510950820041813 0.0 0.10177925614148045 0.0 72-73 0.0 0.0013608151905078086 0.0 0.10485567048287847 0.0 74-75 0.0 0.0013802554075150629 0.0 0.1074703796703542 0.0 76-77 0.0 0.001419135841529572 0.0 0.1099052668505128 0.0 78-79 0.0 0.001428855950033199 0.0 0.11130982252928692 0.0 80-81 0.0 0.001428855950033199 0.0 0.11184442849698642 0.0 82-83 0.0 0.001428855950033199 0.0 0.11228183337964964 0.0 84-85 0.0 0.0014531562212922672 0.0 0.11246165538696676 0.0 86-87 0.0 0.0014871766010549623 0.0 0.11256857658050665 0.0 88 0.0 0.0015454972520767254 0.0 0.11257829668901027 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12815 0.0 48.286686 1 GTATCAA 23015 0.0 38.323643 1 CTTATAC 9620 0.0 35.481197 1 ATCAACG 26155 0.0 33.07851 3 TCAACGC 26940 0.0 32.19473 4 CAACGCA 26965 0.0 32.100872 5 AACGCAG 28295 0.0 30.804882 6 TATCAAC 28740 0.0 30.359266 2 TATACAC 13250 0.0 29.17954 3 ACGCAGA 31390 0.0 27.629976 7 CGCAGAG 32020 0.0 27.072876 8 TTATACA 14715 0.0 25.219418 2 ACATCTC 15450 0.0 23.431995 8 ACACATC 15355 0.0 23.211761 6 GCAGAGT 38250 0.0 22.6972 9 TACACAT 18370 0.0 21.727957 5 TATGCCG 9815 0.0 20.396994 42-43 CACATCT 18070 0.0 19.77188 7 GAGTACT 23860 0.0 19.757261 12-13 CTCGTAT 10025 0.0 19.618383 38-39 >>END_MODULE