##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139421_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8005837 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.817272447590426 33.0 31.0 34.0 30.0 34.0 2 31.489369568728417 33.0 31.0 34.0 30.0 34.0 3 31.786297922378385 33.0 31.0 34.0 30.0 34.0 4 33.15925530334929 37.0 35.0 37.0 28.0 37.0 5 34.52597361150371 37.0 35.0 37.0 30.0 37.0 6 35.172564592559155 37.0 35.0 37.0 32.0 37.0 7 35.276987153248314 37.0 35.0 37.0 32.0 37.0 8 35.4115685842717 37.0 35.0 37.0 32.0 37.0 9 37.15682407723265 39.0 37.0 39.0 33.0 39.0 10-11 37.03674181725159 39.0 37.0 39.0 33.0 39.0 12-13 36.934300623407644 39.0 37.0 39.0 32.5 39.0 14-15 38.259062044355886 40.0 38.0 41.0 33.0 41.0 16-17 38.25010451749142 40.0 38.0 41.0 32.5 41.0 18-19 38.19304571152273 40.0 38.0 41.0 32.5 41.0 20-21 38.257026809093475 40.0 38.0 41.0 32.5 41.0 22-23 38.29656797909014 40.0 38.0 41.0 32.5 41.0 24-25 38.18479493028812 40.0 38.0 41.0 32.0 41.0 26-27 38.084070718107284 40.0 38.0 41.0 32.0 41.0 28-29 38.0684332716403 40.0 38.0 41.0 32.0 41.0 30-31 38.01984567537441 40.0 37.0 41.0 32.0 41.0 32-33 37.9272705648566 40.0 37.0 41.0 32.0 41.0 34-35 37.81717419807311 40.0 37.0 41.0 31.0 41.0 36-37 37.76576411672805 40.0 37.0 41.0 31.0 41.0 38-39 37.67824606511569 40.0 37.0 41.0 31.0 41.0 40-41 37.60791410794185 40.0 37.0 41.0 31.0 41.0 42-43 37.594486810762014 40.0 37.0 41.0 31.0 41.0 44-45 37.53192008846969 40.0 36.0 41.0 31.0 41.0 46-47 37.3989309817354 40.0 36.0 41.0 30.0 41.0 48-49 37.57645599559174 40.0 36.5 41.0 31.0 41.0 50-51 37.51352332846754 40.0 36.0 41.0 30.5 41.0 52-53 37.46262367978361 40.0 36.0 41.0 30.0 41.0 54-55 37.317443550722295 39.0 36.0 41.0 30.0 41.0 56-57 37.1815467955114 39.0 35.0 41.0 30.0 41.0 58-59 37.071804010717244 39.0 35.0 41.0 30.5 41.0 60-61 36.85459932282981 39.0 35.0 41.0 30.0 41.0 62-63 36.68129790390545 38.5 35.0 40.5 30.0 41.0 64-65 36.43167202449093 38.0 35.0 40.0 30.0 41.0 66-67 36.217765458645474 37.5 34.5 40.0 30.0 41.0 68-69 35.97086903218937 37.0 34.0 40.0 30.0 41.0 70-71 35.72894189771579 36.5 34.0 39.0 30.0 41.0 72-73 35.43533402441702 36.0 34.0 39.0 30.0 41.0 74-75 35.263529366105686 36.0 34.0 39.0 30.0 40.5 76-77 35.07595571796089 35.5 34.0 38.5 30.0 40.0 78-79 34.81903294984901 35.0 34.0 37.0 30.0 39.0 80-81 34.56554632281609 35.0 34.0 37.0 30.0 39.0 82-83 34.31564597443055 35.0 34.0 36.0 30.0 39.0 84-85 34.10415465475616 35.0 34.0 36.0 30.0 37.0 86-87 33.91765980333837 35.0 34.0 36.0 29.0 37.0 88-89 33.778233059061535 35.0 34.0 35.0 29.0 37.0 90-91 33.6453087727279 35.0 34.0 35.0 29.0 36.0 92-93 33.600642611308686 35.0 34.0 35.0 29.0 36.0 94-95 33.57811801716029 35.0 34.0 35.0 29.5 36.0 96-97 33.58720722575644 35.0 34.0 35.0 30.0 36.0 98-99 33.623441470244515 35.0 34.0 35.0 30.0 35.5 100-101 33.230229706200035 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 0.0 16 7.0 17 72.0 18 476.0 19 1807.0 20 4690.0 21 10228.0 22 17710.0 23 27774.0 24 42190.0 25 62566.0 26 91602.0 27 127163.0 28 143328.0 29 125369.0 30 148578.0 31 183184.0 32 228754.0 33 298193.0 34 406080.0 35 573772.0 36 876098.0 37 1510186.0 38 2012718.0 39 1065665.0 40 47626.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.69894715568154 20.619430547986425 14.85183872716869 24.82978356916335 2 13.933801698692177 20.69745836192678 42.16184764394209 23.206892295438948 3 17.328340823139598 26.170392832271023 31.261978745397595 25.23928759919179 4 11.889037156254563 18.682299253343658 38.31791465911522 31.110748931286565 5 12.9872538834604 37.566774933857424 35.75966257509701 13.686308607585165 6 29.36711848143836 38.34083385688246 18.71637920840372 13.575668453275458 7 25.682563091405797 33.016513447864085 22.91834030441196 18.382583156318162 8 24.00077993513198 37.20017027667712 21.217870457321286 17.581179330869617 9 24.791685845429644 17.03962256444283 21.133183533922896 37.03550805620463 10-11 23.73303202272654 26.870937607588942 28.96861274093504 20.42741762874948 12-13 24.62685366002287 24.36847906326542 28.966043797359415 22.038623479352296 14-15 21.888431423626994 25.933827344187133 26.375599180572106 25.802142051613764 16-17 21.65087025373772 29.235184476904696 26.993854225660165 22.120091043697425 18-19 21.617397062807157 27.932170967915564 28.820092829135596 21.630339140141682 20-21 22.240846547414904 27.051729621938552 28.925115054520813 21.782308776125728 22-23 21.85428560146078 27.5177311877459 28.687316021275926 21.94066718951739 24-25 21.903132775195473 27.576964633802554 28.845599200624683 21.674303390377283 26-27 21.906124152641485 27.759122069413177 28.835198886773895 21.499554891171442 28-29 21.338474852024998 27.281329377362646 29.154161894886016 22.22603387572634 30-31 22.006741410829065 27.024791689954252 29.3035767723334 21.66489012688329 32-33 21.60395737175474 27.67228786009861 28.956489433305983 21.76726533484067 34-35 21.616394375918674 27.688996565244604 29.41818241359896 21.276426645237756 36-37 22.02922936886644 27.38710822182769 28.752191583069177 21.831470826236696 38-39 21.773904663280288 27.150594078508444 29.05990306194938 22.015598196261887 40-41 21.84464544740989 27.02655635728069 29.14698337051535 21.981814824794068 42-43 21.963075496358307 27.03020855847581 29.153066934561274 21.853649010604606 44-45 21.742901079283328 27.366925781750894 28.878289548572354 22.011883590393424 46-47 22.2053342416458 27.09552364900791 28.203128246456323 22.49601386288997 48-49 22.034446886584206 27.1785053391869 28.417493435328566 22.36955433890033 50-51 21.80933943498649 27.54580197403139 28.430267647709478 22.21459094327264 52-53 21.882808261749716 27.75760221307299 28.519180095419816 21.840409429757482 54-55 21.764134426012475 27.780003415718824 28.17719712807009 22.27866503019861 56-57 22.09694124408601 28.132257272715893 27.739810088381233 22.030991394816862 58-59 21.631468492582673 28.47612718711406 28.258944967827016 21.633459352476255 60-61 22.12086208152519 28.65018263557179 27.575237877195356 21.653717405707663 62-63 21.754337697052737 28.94234418684964 27.551720474535564 21.75159764156206 64-65 21.731054932982772 28.750498020843036 27.600083153986805 21.918363892187383 66-67 21.875858696027663 28.528159352768416 27.606676833293175 21.989305117910746 68-69 21.90204931370679 28.268925211328487 27.69417152293252 22.1348539520322 70-71 21.997908348181795 27.865415204797035 27.834593338859502 22.302083108161664 72-73 22.08866040559426 27.78804347543392 27.852335054240264 22.27096106473156 74-75 21.98027679236101 27.839542121708625 27.850811411363736 22.329369674566625 76-77 22.109312589484674 27.781339356797012 27.77670172624431 22.332646327474006 78-79 22.084774940765826 27.78989519341662 27.745241738230124 22.380088127587427 80-81 22.1231384968269 27.815477104625643 27.751251839209722 22.310132559337738 82-83 22.11784072247405 27.80748976952617 27.882754004271703 22.191915503728076 84-85 22.21642591196387 27.82827096899817 27.74687305714091 22.20843006189705 86-87 22.077351659881405 27.855094190471043 27.823763455267642 22.24379069437991 88-89 22.116176947200874 27.826946485419413 27.80539394066292 22.251482626716797 90-91 22.13439323604471 27.868940022852662 27.79618091146104 22.200485829641593 92-93 22.198249059358336 27.80287701138176 27.90335398513951 22.095519944120394 94-95 21.977495535357527 27.860685545358898 27.94820486447084 22.213614054812737 96-97 22.011117144576424 27.931129852024796 27.897599145209583 22.1601538581892 98-99 22.296499819168876 28.47636281372351 27.882486450434264 21.344650916673352 100-101 22.961495447182816 31.059585203001394 25.11580353452953 20.863115815286264 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2132.0 1 1760.5 2 1942.5 3 2560.5 4 3258.5 5 5194.0 6 6984.0 7 8522.0 8 9619.0 9 9375.0 10 8011.5 11 6625.5 12 7140.0 13 10098.5 14 17387.0 15 27679.5 16 36102.5 17 40824.0 18 41914.0 19 39923.0 20 36865.0 21 33855.0 22 32879.5 23 36385.5 24 43855.0 25 54834.5 26 68313.5 27 83546.5 28 101348.0 29 120589.0 30 138885.5 31 157709.5 32 176828.5 33 193552.0 34 209404.0 35 225390.0 36 242115.0 37 258669.0 38 272744.0 39 284563.5 40 296187.5 41 307540.5 42 316255.0 43 324619.5 44 340960.5 45 362728.0 46 366107.5 47 361889.0 48 352811.5 49 333662.0 50 321370.5 51 309892.0 52 294450.0 53 277139.5 54 259843.0 55 240422.0 56 218916.5 57 196884.5 58 174365.0 59 149263.0 60 122510.0 61 98466.5 62 78021.5 63 60487.5 64 45688.5 65 34014.0 66 25494.0 67 19593.0 68 15038.5 69 11276.5 70 8443.5 71 6272.0 72 4651.5 73 3386.0 74 2355.5 75 1576.5 76 1065.5 77 740.0 78 522.5 79 353.0 80 238.5 81 178.5 82 142.0 83 105.0 84 77.5 85 59.5 86 52.5 87 45.5 88 31.0 89 20.5 90 13.0 91 8.5 92 7.5 93 4.5 94 1.5 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 1.637217944856984 3 0.0063953338045728385 4 8.031789805363262 5 3.2476304476346447E-4 6 0.07433326459182218 7 0.02267095870175723 8 5.371081124934219E-4 9 2.498177267411265E-4 10-11 0.26435711843746007 12-13 0.2782157568284241 14-15 9.368164752792245E-5 16-17 1.3739974970761957E-4 18-19 0.44604955109628136 20-21 1.9988801274086192E-4 22-23 1.1246776392716438E-4 24-25 0.15854276416824772 26-27 0.1449735942070095 28-29 1.063813144350057E-4 30-31 1.1278278874492932E-4 32-33 8.163821522533875E-5 34-35 3.2118071573044275E-4 36-37 1.8967182538204806E-4 38-39 0.0015256592039682396 40-41 0.0017651100293487915 42-43 0.0011585518050945128 44-45 9.210090133703917E-4 46-47 0.0014200360676073281 48-49 0.0025475278947704664 50-51 2.7935457918026196E-4 52-53 0.001487186083153799 54-55 3.9811657123115185E-4 56-57 0.009448698701950153 58-59 1.1670544376661466E-4 60-61 0.0026362654386294752 62-63 0.0013454822909302721 64-65 0.001473234620475284 66-67 0.00483032376929227 68-69 0.0020466880015746437 70-71 0.0025439156302293642 72-73 0.003618685375443437 74-75 7.427772230290651E-4 76-77 3.1068997043519705E-4 78-79 8.040773614316252E-4 80-81 3.638154143017697E-4 82-83 0.0015728709958597496 84-85 2.530826454823838E-4 86-87 4.0772160768627185E-4 88-89 8.892639966110958E-5 90-91 2.1267373501457918E-4 92-93 0.0 94-95 0.0 96-97 5.107492717353822E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 880.0 20-21 2050.0 22-23 2662.0 24-25 3559.0 26-27 4881.0 28-29 7859.0 30-31 17060.0 32-33 21174.0 34-35 27921.0 36-37 40387.0 38-39 47409.0 40-41 48569.0 42-43 56084.0 44-45 67474.0 46-47 66263.0 48-49 60496.0 50-51 54359.0 52-53 52950.0 54-55 57877.0 56-57 64621.0 58-59 75719.0 60-61 72642.0 62-63 74246.0 64-65 80630.0 66-67 86027.0 68-69 90616.0 70-71 76210.0 72-73 64839.0 74-75 65362.0 76-77 68052.0 78-79 70029.0 80-81 70325.0 82-83 67862.0 84-85 67541.0 86-87 68430.0 88-89 71665.0 90-91 74077.0 92-93 74626.0 94-95 83234.0 96-97 130428.0 98-99 649846.0 100-101 5118896.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.26257366703855 #Duplication Level Percentage of deduplicated Percentage of total 1 90.10774872997362 77.72926312790351 2 7.003208015751339 12.082294947286895 3 1.6882453066608727 4.368971554015969 4 0.602989545145145 2.080617202341486 5 0.24858000334049288 1.0721575425155978 6 0.13642741552815746 0.7061147989320817 7 0.07014876914528001 0.4235849356232758 8 0.03858103777003937 0.2662479690231055 9 0.030058587004704502 0.23336379682383687 >10 0.07287364644437111 0.9290871147475313 >50 8.223339813009573E-4 0.04674960283928793 >100 2.9519339789147304E-4 0.04948397136434588 >500 2.1415856735750303E-5 0.01206343658309694 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.7472659011168975E-5 0.0 1.2490886337056325E-5 1.2490886337056325E-5 3 0.0 3.7472659011168975E-5 0.0 4.99635453482253E-5 1.2490886337056325E-5 4 0.0 1.1241797703350693E-4 0.0 4.99635453482253E-5 1.2490886337056325E-5 5 0.0 1.3739974970761957E-4 0.0 7.494531802233795E-5 1.2490886337056325E-5 6 4.99635453482253E-5 1.3739974970761957E-4 0.0 7.494531802233795E-5 1.2490886337056325E-5 7 4.99635453482253E-5 1.3739974970761957E-4 0.0 7.494531802233795E-5 1.2490886337056325E-5 8 4.99635453482253E-5 1.498906360446759E-4 0.0 9.99270906964506E-5 1.2490886337056325E-5 9 4.99635453482253E-5 2.4981772674112653E-4 0.0 1.6238152238173223E-4 2.498177267411265E-5 10-11 4.99635453482253E-5 2.4981772674112653E-4 0.0 1.7487240871878857E-4 2.498177267411265E-5 12-13 4.99635453482253E-5 2.5606316990965466E-4 0.0 1.7487240871878857E-4 4.371810217969714E-5 14-15 7.494531802233796E-5 3.809720332802179E-4 0.0 1.7487240871878857E-4 8.743620435939427E-5 16-17 1.7487240871878857E-4 4.3093557862844325E-4 0.0 1.7487240871878857E-4 1.3739974970761957E-4 18-19 1.7487240871878857E-4 4.4967190813402773E-4 0.0 2.3108139723554202E-4 1.3739974970761957E-4 20-21 1.7487240871878857E-4 4.684082376396122E-4 0.0 2.5606316990965466E-4 1.4364519287614775E-4 22-23 1.8111785188731672E-4 4.996354534822531E-4 0.0 2.997812720893518E-4 1.9360873822437305E-4 24-25 1.998541813929012E-4 5.808262146731191E-4 0.0 4.184446922913869E-4 2.4981772674112653E-4 26-27 1.998541813929012E-4 6.370352031898726E-4 0.0 5.808262146731191E-4 2.935358289208236E-4 28-29 1.998541813929012E-4 6.495260895269289E-4 0.0 0.0018236694052102234 2.997812720893518E-4 30-31 1.998541813929012E-4 7.68189509728964E-4 0.0 0.006570206213291628 3.0602671525788E-4 32-33 1.998541813929012E-4 7.869258392345485E-4 0.0 0.01818673050675401 3.809720332802179E-4 34-35 2.4357228357259835E-4 8.681166004254146E-4 0.0 0.03316954866805307 3.997083627858024E-4 36-37 2.6230861307818284E-4 9.61798247953337E-4 0.0 0.05676483295875247 4.0595380595433053E-4 38-39 2.6230861307818284E-4 9.992709069645061E-4 0.0 0.0927198492799691 4.184446922913869E-4 40-41 2.6230861307818284E-4 0.001074216224986844 0.0 0.13311537569400927 4.371810217969714E-4 42-43 2.6230861307818284E-4 0.001117934327166541 0.0 0.17168098725967068 4.371810217969714E-4 44-45 2.6230861307818284E-4 0.00122410686103152 0.0 0.2159986519835465 4.4967190813402773E-4 46-47 2.6230861307818284E-4 0.0013240339517279704 0.0 0.2650566080723352 4.933900103137248E-4 48-49 2.6230861307818284E-4 0.0013240339517279704 0.0 0.31447679986489857 5.620898851675346E-4 50-51 2.68554056246711E-4 0.0014864154741097027 0.0 0.3622044765587908 5.620898851675346E-4 52-53 2.7479949941523914E-4 0.0015238881331208717 0.0 0.4085331739829327 6.058079873472318E-4 54-55 2.810449425837673E-4 0.001567606235300569 0.0 0.4595334628971337 6.620169758639852E-4 56-57 2.872903857522955E-4 0.0016113243374802659 0.0 0.5137376641567897 6.807533053695698E-4 58-59 2.872903857522955E-4 0.0016363061101543786 0.0 0.5678856564279288 6.93244191706626E-4 60-61 3.0602671525788E-4 0.0016612878828284913 0.0 0.6242570264670639 6.994896348751543E-4 62-63 3.3725393110052077E-4 0.0017424786440193574 0.0 0.6458350326143287 7.244714075492669E-4 64-65 3.3725393110052077E-4 0.002029769029771653 0.0 0.6530610103603158 7.244714075492669E-4 66-67 3.3725393110052077E-4 0.0020672416887828216 0.0 0.6591690537791364 7.369622938863231E-4 68-69 3.3725393110052077E-4 0.002110959790962519 0.0 0.664521398574565 7.494531802233795E-4 70-71 3.497448174375771E-4 0.002135941563636632 0.0 0.6700048976765327 7.619440665604358E-4 72-73 3.7472659011168974E-4 0.002148432449973688 0.0 0.6739082996568628 8.243984982457174E-4 74-75 3.7472659011168974E-4 0.0022483595406701386 0.0 0.6769310941504305 8.368893845827738E-4 76-77 3.8721747644874605E-4 0.0023233048586924765 0.0 0.6797352981330996 8.368893845827738E-4 78-79 3.997083627858024E-4 0.002373268404040702 0.0 0.6823896114797241 8.368893845827738E-4 80-81 3.997083627858024E-4 0.0023982501767148144 0.0 0.6836636818861039 8.743620435939427E-4 82-83 3.997083627858024E-4 0.002416986506220399 0.0 0.6841508264532491 9.368164752792244E-4 84-85 3.997083627858024E-4 0.002423231949388927 0.0 0.6846879345657424 9.368164752792244E-4 86-87 3.997083627858024E-4 0.002454459165231568 0.0 0.6848065979859446 9.368164752792244E-4 88-89 3.997083627858024E-4 0.0026480679034559407 0.0 0.6848628069744612 9.368164752792244E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9045 0.0 53.16131 1 GTATCAA 16715 0.0 41.55573 1 CTTATAC 14525 0.0 34.892292 1 ATCAACG 20430 0.0 33.342045 3 TCAACGC 20695 0.0 32.980297 4 TATCAAC 21525 0.0 31.989597 2 CAACGCA 21460 0.0 30.414013 5 TATACAC 18000 0.0 30.1154 3 AACGCAG 22220 0.0 29.492538 6 TTATACA 18105 0.0 28.99168 2 ACATCTC 18100 0.0 26.647127 8 ACGCAGA 25175 0.0 25.873005 7 CGCAGAG 25685 0.0 25.421244 8 CATCTCC 21695 0.0 22.053677 9 TACACAT 23145 0.0 21.916761 5 GCAGAGT 30340 0.0 21.35135 9 ACACATC 22660 0.0 21.135937 6 GTGGTAT 4670 0.0 20.652468 1 ATACACA 28495 0.0 20.23883 4 GTACATG 19865 0.0 19.840649 1 >>END_MODULE