##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139420_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7808881 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.797245853791342 33.0 31.0 34.0 30.0 34.0 2 31.46448114653047 33.0 31.0 34.0 28.0 34.0 3 31.765588052884915 33.0 31.0 34.0 30.0 34.0 4 33.13336341019923 37.0 35.0 37.0 28.0 37.0 5 34.50206002627009 37.0 35.0 37.0 30.0 37.0 6 35.131551114685955 37.0 35.0 37.0 32.0 37.0 7 35.265883165590566 37.0 35.0 37.0 32.0 37.0 8 35.41179779791752 37.0 35.0 37.0 32.0 37.0 9 37.153995303552456 39.0 37.0 39.0 33.0 39.0 10-11 37.034682946250555 39.0 37.0 39.0 33.0 39.0 12-13 36.92854949383913 39.0 37.0 39.0 32.5 39.0 14-15 38.256884565150884 40.0 38.0 41.0 32.5 41.0 16-17 38.25923413354615 40.0 38.0 41.0 32.5 41.0 18-19 38.20369499804133 40.0 38.0 41.0 33.0 41.0 20-21 38.26404617618221 40.0 38.0 41.0 32.5 41.0 22-23 38.303226510016984 40.0 38.0 41.0 32.5 41.0 24-25 38.19444298599713 40.0 38.0 41.0 32.0 41.0 26-27 38.102591140450365 40.0 38.0 41.0 32.0 41.0 28-29 38.10595526391601 40.0 38.0 41.0 32.0 41.0 30-31 38.05852193204497 40.0 37.5 41.0 32.0 41.0 32-33 37.9597333331822 40.0 37.0 41.0 32.0 41.0 34-35 37.85214849848239 40.0 37.0 41.0 31.0 41.0 36-37 37.809900817808995 40.0 37.0 41.0 31.0 41.0 38-39 37.74835928354477 40.0 37.0 41.0 31.0 41.0 40-41 37.65846993475878 40.0 37.0 41.0 31.0 41.0 42-43 37.62801573471361 40.0 37.0 41.0 31.0 41.0 44-45 37.562624917917184 40.0 36.5 41.0 31.0 41.0 46-47 37.427873448896015 40.0 36.0 41.0 30.0 41.0 48-49 37.604271144147546 40.0 37.0 41.0 31.0 41.0 50-51 37.56846192589977 40.0 36.0 41.0 31.0 41.0 52-53 37.505963412619316 40.0 36.0 41.0 31.0 41.0 54-55 37.380493541482664 39.5 36.0 41.0 30.5 41.0 56-57 37.2494134996817 39.0 35.5 41.0 30.0 41.0 58-59 37.13775413014455 39.0 35.0 41.0 30.5 41.0 60-61 36.92935698198762 39.0 35.0 41.0 30.5 41.0 62-63 36.747859843126705 38.5 35.0 41.0 30.0 41.0 64-65 36.49076351254419 38.0 35.0 40.0 30.0 41.0 66-67 36.27416665903994 37.5 35.0 40.0 30.0 41.0 68-69 36.02244029886202 37.0 34.0 40.0 30.0 41.0 70-71 35.77367131036087 36.5 34.0 39.0 30.0 41.0 72-73 35.47187013231786 36.0 34.0 39.0 30.0 41.0 74-75 35.2923091718298 36.0 34.0 39.0 30.0 40.5 76-77 35.09655657607763 35.5 34.0 38.5 30.0 40.0 78-79 34.83881448552611 35.0 34.0 37.0 30.0 39.0 80-81 34.58240010365476 35.0 34.0 37.0 30.0 39.0 82-83 34.33235098829035 35.0 34.0 36.0 30.0 39.0 84-85 34.11954098125031 35.0 34.0 36.0 30.0 37.0 86-87 33.93111002426478 35.0 34.0 36.0 29.5 37.0 88-89 33.78930850988746 35.0 34.0 35.0 29.0 37.0 90-91 33.65588518361368 35.0 34.0 35.0 29.0 36.0 92-93 33.610136271619304 35.0 34.0 35.0 29.0 36.0 94-95 33.586863638151186 35.0 34.0 35.0 29.5 36.0 96-97 33.59169255751529 35.0 34.0 35.0 30.0 36.0 98-99 33.62620746831804 35.0 34.0 35.0 30.0 35.5 100-101 33.233039397924756 34.5 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 4.0 17 62.0 18 430.0 19 1762.0 20 4808.0 21 10493.0 22 17857.0 23 27230.0 24 41099.0 25 61187.0 26 88847.0 27 122778.0 28 137512.0 29 119310.0 30 142588.0 31 176110.0 32 221668.0 33 288797.0 34 394351.0 35 560276.0 36 855680.0 37 1481723.0 38 1972176.0 39 1037105.0 40 45028.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.456936147445454 20.404344745425114 14.841601504748247 24.297117602381185 2 14.252455441182674 20.7781929848406 41.86724448492366 23.10210708905306 3 17.91384747471436 25.856387185876105 30.559626678196157 25.670138661213382 4 12.210974977857466 18.173095048975508 38.74645883174642 30.8694711414206 5 13.245477505406042 37.54867231478524 35.469084195965245 13.736765983843469 6 29.74046184230711 38.209352159981485 18.64766265204145 13.402523345669959 7 26.095440526018958 32.89309274128832 23.077438392298006 17.934028340394715 8 24.000530680341416 37.446298069214855 20.925069062719142 17.628102187724583 9 25.07297795518299 17.32615431307879 21.3828770250222 36.217990706716016 10-11 23.98868608832103 27.055508068644627 28.800507594203523 20.155298248830814 12-13 24.79007937850744 24.573858136545827 29.035911000372867 21.600151484573864 14-15 21.900790965357302 25.987813482235694 26.742307519181217 25.369088033225783 16-17 21.463753929183643 29.167188508868243 27.396901268992174 21.972156292955937 18-19 21.49667019609417 28.128334562973528 29.287026061169197 21.087969179763107 20-21 22.19450771093357 27.289068030981422 29.300676617890364 21.215747640194643 22-23 21.93074013579959 27.233954944178272 29.1639148582027 21.671390061819444 24-25 21.764575555001592 27.35689388573384 29.220490818241775 21.65803974102279 26-27 21.703794967451053 27.55329021549248 29.174876338145424 21.568038478911042 28-29 21.605873430857322 27.476975557501653 29.2517506056464 21.665400405994628 30-31 21.898858608596747 27.397954156529238 29.109116319305944 21.59407091556807 32-33 21.763985691779737 27.482864195826945 29.093224555462378 21.659925556930936 34-35 21.841595166762247 27.50697871257051 29.072596168866898 21.57882995180034 36-37 21.82294911582769 27.518527914094626 28.957048933780307 21.701474036297377 38-39 21.727787485526587 27.524773758787862 29.086055529046977 21.66138322663857 40-41 21.9670010765504 27.3826655073383 28.95376730392597 21.69656611218533 42-43 21.8499307550309 27.488284853504386 28.839661060594146 21.82212333087057 44-45 21.88103136719425 27.60746685002178 28.63610284659609 21.875398936187878 46-47 22.030212864888984 27.577342830323815 28.290675712525537 22.101768592261664 48-49 21.876785820325676 27.710493136538734 28.351444508450708 22.061276534684882 50-51 21.88096603202114 27.868141975251078 28.20899731488356 22.041894677844226 52-53 22.053790686214374 27.831341073003703 28.091151650065832 22.0237165907161 54-55 21.95112458287569 27.78625513805783 28.117539275036634 22.145081004029844 56-57 21.99670445783993 27.885280257013072 28.068127988405877 22.049887296741122 58-59 21.950105221277898 27.95424512307978 28.124137914604177 21.97151174103815 60-61 22.061026249601024 27.897172142792652 28.063502555076465 21.978299052529863 62-63 21.98112490624523 28.017361627717413 28.009634048185482 21.991879417851877 64-65 21.973815312420793 27.96018466933664 27.94253822014768 22.123461798094887 66-67 22.028740528258044 27.98285412162266 27.892437592521684 22.095967757597613 68-69 21.987406236929345 27.90181095691328 27.96792221488953 22.142860591267844 70-71 22.0038127950287 27.733367880063952 27.965804940916154 22.297014383991197 72-73 22.05867048360283 27.76385689471369 27.909571414726514 22.267901206956964 74-75 21.95671760097038 27.870009587320965 27.909905358865622 22.263367452843035 76-77 22.097742341374698 27.78683224034481 27.897285042933788 22.2181403753467 78-79 22.070545323000413 27.818334595007265 27.811035211322142 22.30008487067018 80-81 22.052954515986567 27.868436743316323 27.79788328790101 22.280725452796105 82-83 22.10268377350789 27.846839113897197 27.904715049832703 22.145762062762213 84-85 22.18826462874738 27.82273725216327 27.84233040071032 22.14666771837904 86-87 22.033318464840193 27.865818223130706 27.934910011020037 22.165953301009065 88-89 22.08391711644693 27.824663759080494 27.89490734035742 22.196511784115156 90-91 22.077698733846756 27.890076360788406 27.903977940216684 22.12824696514815 92-93 22.107141436526643 27.860442577242555 27.936836361493704 22.095579624737095 94-95 21.970867501060955 27.89672685565642 27.969233614169998 22.163172029112623 96-97 21.977574729791243 27.941987666601236 27.996750810497073 22.083686793110452 98-99 22.270874596411087 28.494364751989803 28.002417351899762 21.232343299699355 100-101 22.910464188185948 31.104372519860096 25.207612123391932 20.777551168562027 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2345.0 1 1856.5 2 2006.0 3 2772.5 4 3418.0 5 5162.5 6 6906.0 7 8756.0 8 10430.5 9 10528.5 10 9040.5 11 7466.0 12 7846.0 13 10585.0 14 17687.0 15 27485.0 16 35526.5 17 40095.5 18 41028.5 19 39268.5 20 36208.5 21 33291.0 22 32694.0 23 35957.0 24 42989.0 25 53896.0 26 68125.5 27 83711.5 28 100632.5 29 118597.5 30 136211.0 31 153913.0 32 171670.5 33 189869.5 34 207722.5 35 223557.5 36 240272.0 37 256380.5 38 269601.0 39 280168.5 40 289744.5 41 299475.5 42 305028.0 43 309561.0 44 316922.5 45 324121.0 46 325386.0 47 323570.0 48 321237.5 49 314681.0 50 305633.0 51 295131.0 52 281959.0 53 266934.0 54 251576.0 55 234261.0 56 214743.0 57 193711.0 58 172174.5 59 149203.0 60 124961.5 61 102043.5 62 81400.0 63 63325.5 64 47714.5 65 35415.5 66 26546.0 67 20289.0 68 15267.5 69 11206.0 70 8295.5 71 6067.5 72 4338.5 73 3057.0 74 2126.0 75 1480.5 76 1036.5 77 714.0 78 485.0 79 351.5 80 246.5 81 164.5 82 124.5 83 90.0 84 64.5 85 48.5 86 39.5 87 32.0 88 21.0 89 12.5 90 8.0 91 5.5 92 4.0 93 2.0 94 1.5 95 2.0 96 1.5 97 0.5 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 0.0 2 1.633691178031782 3 0.006364548262420697 4 8.087176639008842 5 3.457601671737602E-4 6 0.07463297238106202 7 0.02384464560287191 8 4.73819488349227E-4 9 2.0489491388074683E-4 10-11 0.26597921008144443 12-13 0.28108380701409075 14-15 7.04326266465067E-5 16-17 8.964152482282672E-5 18-19 0.43859036909385607 20-21 1.9212055949349333E-4 22-23 1.4092655881429005E-4 24-25 0.15796528967319942 26-27 0.1348617839811178 28-29 1.2188933603029528E-4 30-31 8.350164803348801E-5 32-33 7.081105306464445E-5 34-35 3.808551230339565E-4 36-37 2.5918763467632487E-4 38-39 0.0014982098021353398 40-41 0.0017035808614484238 42-43 0.0011141304706113477 44-45 8.767386491237462E-4 46-47 0.0013466767334660758 48-49 0.0025265584187257164 50-51 2.8588883348847343E-4 52-53 0.0014735267217217372 54-55 4.5545668158402313E-4 56-57 0.007890934630107052 58-59 1.1911960799839117E-4 60-61 0.0028328493823434647 62-63 0.001730662974965497 64-65 0.0015369483459670725 66-67 0.004637644864808305 68-69 0.0018798709779447248 70-71 0.002496401820837082 72-73 0.0036602481618435005 74-75 6.995250375430574E-4 76-77 3.4162891856910323E-4 78-79 7.897380063332387E-4 80-81 4.802166241700773E-4 82-83 0.001682411692557809 84-85 2.845305932826437E-4 86-87 4.3910696182531816E-4 88-89 8.875243605265956E-5 90-91 2.9369447746694385E-4 92-93 0.0 94-95 0.0 96-97 5.083210030190031E-5 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 793.0 20-21 1997.0 22-23 2616.0 24-25 3367.0 26-27 4540.0 28-29 7479.0 30-31 16332.0 32-33 20040.0 34-35 26487.0 36-37 38067.0 38-39 45094.0 40-41 45385.0 42-43 53233.0 44-45 64264.0 46-47 62983.0 48-49 57711.0 50-51 51055.0 52-53 49062.0 54-55 52772.0 56-57 55587.0 58-59 57919.0 60-61 57355.0 62-63 58013.0 64-65 60653.0 66-67 64253.0 68-69 65648.0 70-71 64132.0 72-73 59634.0 74-75 60724.0 76-77 63815.0 78-79 65920.0 80-81 66304.0 82-83 63862.0 84-85 63017.0 86-87 65124.0 88-89 67470.0 90-91 69881.0 92-93 71287.0 94-95 78911.0 96-97 126372.0 98-99 648324.0 100-101 5151399.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.9068524210385 #Duplication Level Percentage of deduplicated Percentage of total 1 90.63547579595841 78.76843919109963 2 6.755631014685323 11.74221255208496 3 1.5142003231277348 3.947831520538525 4 0.5388600435801211 1.873225211320478 5 0.22771494002685821 0.98949943434899 6 0.11478667056609206 0.5985448943273834 7 0.061776343441674056 0.3758151293817869 8 0.04111704856560748 0.2858682617343937 9 0.02756812445744959 0.21562730313735542 >10 0.08118541020080615 1.0560238541963631 >50 0.0014324297159784946 0.08418504594362959 >100 1.8597864053447987E-4 0.029502570726089923 >500 6.58770334275919E-5 0.03322503116043313 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2805932117546675E-5 0.0 2 0.0 2.561186423509335E-5 0.0 1.2805932117546675E-5 1.2805932117546675E-5 3 0.0 2.561186423509335E-5 0.0 1.2805932117546675E-5 1.2805932117546675E-5 4 0.0 6.402966058773338E-5 0.0 2.561186423509335E-5 1.2805932117546675E-5 5 0.0 7.683559270528006E-5 0.0 3.841779635264003E-5 1.2805932117546675E-5 6 0.0 7.683559270528006E-5 0.0 3.841779635264003E-5 3.841779635264003E-5 7 0.0 7.683559270528006E-5 0.0 3.841779635264003E-5 3.841779635264003E-5 8 0.0 7.683559270528006E-5 0.0 3.841779635264003E-5 3.841779635264003E-5 9 0.0 1.024474569403734E-4 0.0 7.683559270528006E-5 5.12237284701867E-5 10-11 0.0 1.024474569403734E-4 0.0 1.2805932117546676E-4 5.12237284701867E-5 12-13 0.0 1.024474569403734E-4 0.0 1.4726821935178678E-4 5.12237284701867E-5 14-15 0.0 1.344622872342401E-4 0.0 1.7288008358688013E-4 5.12237284701867E-5 16-17 0.0 1.4086525329301344E-4 0.0 1.7928304964565344E-4 5.12237284701867E-5 18-19 0.0 1.4086525329301344E-4 0.0 1.7928304964565344E-4 6.402966058773338E-5 20-21 0.0 1.4086525329301344E-4 0.0 1.9849194782197346E-4 6.402966058773338E-5 22-23 0.0 1.5367118541056011E-4 0.0 2.8173050658602687E-4 7.043262664650672E-5 24-25 0.0 1.8568601570442678E-4 0.0 3.0734237082112023E-4 8.323855876405338E-5 26-27 0.0 1.9849194782197346E-4 0.0 6.018788095246937E-4 8.964152482282672E-5 28-29 0.0 2.048949138807468E-4 0.0 0.0017992334625153079 8.964152482282672E-5 30-31 0.0 2.689245744684802E-4 0.0 0.006153250382481178 8.964152482282672E-5 32-33 0.0 2.689245744684802E-4 0.0 0.017255993528394145 1.2805932117546676E-4 34-35 0.0 3.521631332325336E-4 0.0 0.03226454597015885 1.2805932117546676E-4 36-37 0.0 4.225957598790403E-4 0.0 0.05571861064344558 1.4086525329301344E-4 38-39 0.0 4.2899872593781365E-4 0.0 0.09108219218605074 1.5367118541056011E-4 40-41 0.0 4.994313525843203E-4 0.0 0.13031956819421375 1.5367118541056011E-4 42-43 0.0 5.122372847018669E-4 0.0 0.16773850184168515 1.7288008358688013E-4 44-45 0.0 6.338936398185604E-4 0.0 0.2104654943518796 1.9208898176320012E-4 46-47 0.0 7.555499949352539E-4 0.0 0.258250830048505 1.9208898176320012E-4 48-49 0.0 7.683559270528005E-4 0.0 0.3050437060060206 2.048949138807468E-4 50-51 0.0 8.579974518756273E-4 0.0 0.35102340527407194 2.048949138807468E-4 52-53 0.0 8.644004179344006E-4 0.0 0.3948901257427281 2.1129787993952014E-4 54-55 0.0 8.772063500519472E-4 0.0 0.44162537500571464 2.1770084599829348E-4 56-57 0.0 8.836093161107207E-4 0.0 0.49114591450426764 2.1770084599829348E-4 58-59 0.0 8.836093161107207E-4 0.0 0.5426449705149816 2.3050677811584016E-4 60-61 0.0 9.156241464045873E-4 0.0 0.5935741625464648 2.3050677811584016E-4 62-63 0.0 9.348330445809073E-4 0.0 0.613877967918835 2.4331271023338684E-4 64-65 0.0 0.0010949071960502407 0.0 0.6207163356696049 2.561186423509335E-4 66-67 0.0 0.0011141160942265606 0.0 0.6256338136027428 2.561186423509335E-4 68-69 0.0 0.0011269220263441075 0.0 0.6304616500110579 2.625216084097069E-4 70-71 0.0 0.0011269220263441075 0.0 0.6347324283722597 2.8173050658602687E-4 72-73 0.0 0.0011269220263441075 0.0 0.6382092389421736 3.0734237082112023E-4 74-75 0.0 0.0011397279584616541 0.0 0.6411546033292094 3.0734237082112023E-4 76-77 0.0 0.001158936856637974 0.0 0.6437798194133064 3.0734237082112023E-4 78-79 0.0 0.0011653398226967474 0.0 0.6460592753302298 3.0734237082112023E-4 80-81 0.0 0.0011653398226967474 0.0 0.6471797943905151 3.137453368798936E-4 82-83 0.0 0.0012037576190493874 0.0 0.647576778286159 3.201483029386669E-4 84-85 0.0 0.0012293694832844807 0.0 0.6479417473515092 3.201483029386669E-4 86-87 0.0 0.0012421754154020275 0.0 0.6479993740460381 3.201483029386669E-4 88-89 0.0 0.0013254139741660808 0.0 0.6480313888763319 3.201483029386669E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9435 0.0 56.53156 1 GTATCAA 17505 0.0 41.376865 1 ATCAACG 21090 0.0 33.524467 3 TCAACGC 21275 0.0 33.275723 4 TATCAAC 22010 0.0 32.3324 2 CAACGCA 22190 0.0 30.45324 5 AACGCAG 22985 0.0 29.52733 6 ACGCAGA 26385 0.0 25.671316 7 CGCAGAG 26945 0.0 25.164871 8 GTGGTAT 4720 0.0 24.151087 1 TGGTATC 4405 0.0 23.002775 2 GCAGAGT 31115 0.0 21.569788 9 GAGTACT 19430 0.0 19.952892 12-13 GTACATG 20245 0.0 19.649452 1 TACATGG 20205 0.0 19.316875 2 CAGAGTA 30500 0.0 19.149315 10-11 AGAGTAC 28290 0.0 18.72121 10-11 ACATGGG 20875 0.0 18.33399 3 GTACTTT 21440 0.0 18.01352 14-15 CATGGGG 15525 0.0 17.547749 4 >>END_MODULE