##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139419_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4781423 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.88640892052429 33.0 33.0 33.0 33.0 33.0 2 32.94677714144931 33.0 33.0 33.0 33.0 33.0 3 33.592433465936814 33.0 33.0 33.0 33.0 37.0 4 36.766480397153735 37.0 37.0 37.0 37.0 37.0 5 36.77983520805417 37.0 37.0 37.0 37.0 37.0 6 36.74858216894845 37.0 37.0 37.0 37.0 37.0 7 36.73860354961274 37.0 37.0 37.0 37.0 37.0 8 36.72997180964746 37.0 37.0 37.0 37.0 37.0 9 36.74771966420875 37.0 37.0 37.0 37.0 37.0 10-11 36.70549530965991 37.0 37.0 37.0 37.0 37.0 12-13 36.81027321782658 37.0 37.0 37.0 37.0 38.5 14-15 35.129620198840385 40.0 37.0 40.0 19.5 40.0 16-17 36.176181023933665 40.0 37.0 40.0 24.0 40.0 18-19 38.397380131396034 40.0 37.0 40.0 37.0 40.0 20-21 38.74175394615223 40.0 37.0 40.0 37.0 40.0 22-23 38.79110664549964 40.0 37.0 40.0 37.0 40.0 24-25 38.809690388168846 40.0 37.0 40.0 37.0 40.0 26-27 38.76161387091943 40.0 37.0 40.0 37.0 40.0 28-29 38.69421435601576 40.0 37.0 40.0 37.0 40.0 30-31 38.56142347646295 40.0 37.0 40.0 37.0 40.0 32-33 38.3929359248047 40.0 37.0 40.0 37.0 40.0 34-35 38.314116508518765 40.0 37.0 40.0 37.0 40.0 36-37 38.2428709001928 40.0 37.0 40.0 37.0 40.0 38-39 38.24366048580991 40.0 37.0 40.0 37.0 40.0 40-41 38.192595692260156 40.0 37.0 40.0 37.0 40.0 42-43 38.15036336976526 40.0 37.0 40.0 37.0 40.0 44-45 38.09166809771828 40.0 37.0 40.0 37.0 40.0 46-47 37.93764573357805 40.0 37.0 40.0 33.0 40.0 48-49 37.74780259595882 40.0 37.0 40.0 33.0 40.0 50-51 37.669405859255946 40.0 37.0 40.0 33.0 40.0 52-53 37.598824083928534 40.0 37.0 40.0 33.0 40.0 54-55 37.40716894469021 40.0 37.0 40.0 33.0 40.0 56-57 37.321370843268184 38.5 37.0 40.0 33.0 40.0 58-59 37.259411812630084 37.0 37.0 40.0 33.0 40.0 60-61 37.140256414113416 37.0 37.0 40.0 33.0 40.0 62-63 36.9579794807277 37.0 37.0 40.0 33.0 40.0 64-65 36.68697628405525 37.0 37.0 40.0 33.0 40.0 66-67 36.37335051599664 37.0 37.0 40.0 33.0 40.0 68-69 36.08722652518215 37.0 37.0 40.0 33.0 40.0 70-71 35.84869310291056 37.0 35.0 37.0 33.0 40.0 72-73 35.612648813462556 37.0 33.0 37.0 33.0 40.0 74-75 34.96911455187482 37.0 33.0 37.0 30.0 40.0 76-77 32.834539339873544 33.0 30.0 37.0 27.0 37.0 78-79 34.666786864858835 37.0 33.0 37.0 30.0 37.0 80-81 34.92177444058858 37.0 33.0 37.0 33.0 37.0 82-83 34.87546673785377 37.0 33.0 37.0 33.0 37.0 84-85 34.81051224292072 37.0 33.0 37.0 33.0 37.0 86-87 34.62650410297802 37.0 33.0 37.0 33.0 37.0 88-89 34.413073884946954 37.0 33.0 37.0 33.0 37.0 90-91 34.26708550151308 37.0 33.0 37.0 27.0 37.0 92-93 34.261411128748875 37.0 33.0 37.0 33.0 37.0 94-95 34.16887103072191 37.0 33.0 37.0 27.0 37.0 96-97 34.08774480286693 37.0 33.0 37.0 27.0 37.0 98-99 34.04534767347529 35.0 33.0 37.0 27.0 37.0 100 34.0129689338531 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 4.0 19 6.0 20 23.0 21 69.0 22 302.0 23 969.0 24 2378.0 25 5137.0 26 9658.0 27 16354.0 28 25992.0 29 38851.0 30 55626.0 31 79648.0 32 113822.0 33 167192.0 34 256168.0 35 436489.0 36 836705.0 37 1610309.0 38 1100332.0 39 25388.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.132002626834705 0.0 24.04392418988501 28.82407318328028 2 15.122082827465263 24.06882106335298 39.00120990047863 21.807886208703124 3 16.994239939030066 25.010765736118056 32.863531040142654 25.131463284709227 4 12.944587731281826 23.353974445956787 37.6243674441523 26.07707037860909 5 17.312981646128353 36.72386831525316 32.172115676009625 13.791034362608857 6 27.775083317386173 37.7055746050071 20.37438707997528 14.144954997631453 7 25.974064815165328 33.599727777393184 22.340261108662958 18.08594629877853 8 24.02125659798226 32.91873946173766 22.083994055280208 20.976009884999872 9 24.243184139702862 20.534815704692484 23.58546167315159 31.636538482453062 10-11 24.6997795558006 26.40299048625207 28.576780079851023 20.320449878096312 12-13 25.278920636930362 24.657668061435803 28.638021668008612 21.425389633625223 14-15 22.81243488407433 26.673288207726557 26.977259361152907 23.537017547046204 16-17 21.304285356054045 29.070906297142084 27.94460979503382 21.68019855177005 18-19 21.252731665865998 27.824227222732645 30.259286827373355 20.663754284027995 20-21 22.115624940522043 27.220533077273974 30.299865117064122 20.36397686513986 22-23 21.894792088739262 26.99062248390694 30.096567769283272 21.018017658070523 24-25 21.499406126994753 27.228127700641547 30.37772122907384 20.894744943289865 26-27 21.42640914596329 27.47845492185259 30.156397429847022 20.9387385023371 28-29 21.42896808973224 27.51433106837316 30.15926319815171 20.897437643742894 30-31 21.76614950238124 27.335574721290058 30.086625594837546 20.811650181491153 32-33 21.54841424012181 27.680483066942717 29.908521899509914 20.862580793425554 34-35 21.687962347368078 27.558995550507483 29.82359021259155 20.929451889532892 36-37 21.621188765835672 27.61452282670555 29.841365692440302 20.922922715018476 38-39 21.49649043983944 27.949990887011662 29.71625757119787 20.837261101951025 40-41 21.866741259455274 27.65996324248896 29.458549950224207 21.014745547831563 42-43 21.73253200393434 27.768777751836144 29.319658945260596 21.179031298968916 44-45 21.842317281982133 28.19129266488567 28.813960588616293 21.1524294645159 46-47 21.953524231316237 28.063579641368598 28.468616666922863 21.514279460392302 48-49 21.860681848528365 28.33971981589926 28.352145798192236 21.447452537380133 50-51 21.927589027816463 28.56849280517948 28.038723289461853 21.465194877542203 52-53 22.210687377695397 28.34084791821092 27.835553247850303 21.612911456243378 54-55 22.083207572025792 28.342568799078176 27.984756339898492 21.58946728899754 56-57 22.07452435103638 28.620843158487453 27.779794676141627 21.524837814334543 58-59 22.14843205771449 28.390441460573708 27.848696883293428 21.612429598418377 60-61 22.047476185830014 28.480901243774813 27.971821689902583 21.49980088049259 62-63 22.102523752690846 28.718999432399666 27.753815986395878 21.424660828513606 64-65 22.131313425999203 28.458757838768374 27.71509851481771 21.694830220414715 66-67 22.122993810753254 28.428065501739407 27.73425330923438 21.714687378272963 68-69 22.133271152430957 28.607058522512062 27.731610510708606 21.528059814348378 70-71 22.188475507307892 28.247328983832226 27.732008338438057 21.832187170421825 72-73 22.222615634769895 28.322790337572044 27.703556356011934 21.751037671646127 74-75 21.978725676325542 28.537592115991554 27.745251847217233 21.738430360465667 76-77 22.259575208787908 28.37966283362188 27.50300521208383 21.85775674550639 78-79 22.057355184174575 28.41490130815473 27.6763040378688 21.851439469801896 80-81 22.134138332247737 28.507060031639558 27.528659628486 21.830142007626705 82-83 22.253154736097482 28.328508258022143 27.687118834759193 21.73121817112118 84-85 22.348188216989 28.33675788626005 27.652444837453555 21.662609059297395 86-87 22.08261738250287 28.453927027718585 27.653233856128683 21.81022173364986 88-89 22.205630810691694 28.322511129568085 27.645376845497644 21.826481214242584 90-91 22.25408456820995 28.310829681153884 27.712096960268866 21.722988790367296 92-93 22.179044758770285 28.381195934642662 27.68228286691189 21.757476439675166 94-95 22.287018248622704 28.343589719674622 27.647460299651254 21.721931732051416 96-97 22.27855702172835 28.6141117049485 27.755651794759522 21.35167947856363 98-99 23.25670725521475 30.743744391710425 27.28013384829877 18.719414504776054 100 22.689315663777773 30.40901466672604 21.723034410380283 25.178635259115907 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1015.0 1 964.5 2 1635.5 3 2571.5 4 3812.5 5 6588.5 6 8711.0 7 9902.5 8 10808.0 9 10705.5 10 9929.5 11 9120.0 12 9878.5 13 12947.5 14 20804.0 15 32554.0 16 43322.0 17 50129.0 18 50302.5 19 45250.5 20 38613.5 21 32015.5 22 27209.5 23 25933.0 24 27893.0 25 32658.0 26 40214.0 27 49276.0 28 58696.5 29 69063.0 30 79848.0 31 90119.0 32 101483.0 33 112577.5 34 123281.5 35 133602.5 36 144502.5 37 154704.5 38 160727.5 39 165699.0 40 172576.5 41 178131.0 42 180255.5 43 182604.5 44 184904.5 45 186777.0 46 187515.5 47 186868.0 48 185364.0 49 181581.0 50 176861.5 51 170321.0 52 161039.5 53 150433.5 54 139921.5 55 129153.5 56 117626.5 57 105622.5 58 93425.0 59 81269.0 60 68099.0 61 55451.5 62 44072.0 63 33947.5 64 25551.0 65 19350.5 66 14877.0 67 11434.5 68 8925.5 69 6538.5 70 4656.0 71 3485.5 72 2577.5 73 1856.5 74 1342.5 75 977.0 76 725.0 77 531.5 78 368.5 79 247.0 80 176.5 81 141.0 82 106.5 83 74.0 84 50.5 85 30.5 86 17.0 87 13.0 88 11.0 89 8.0 90 5.5 91 4.0 92 3.0 93 2.5 94 2.5 95 2.0 96 1.5 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 6.274282781506677E-5 2 7.947424856575124E-4 3 0.0010457137969177796 4 5.646854503356009E-4 5 7.110853819040901E-4 6 1.6731420750684472E-4 7 8.783995894109349E-4 8 7.738282097191568E-4 9 0.0015685706953766693 10-11 0.008250681857681281 12-13 0.2296387498031444 14-15 7.307939498345995 16-17 0.0 18-19 0.0 20-21 0.0 22-23 3.346935138279671E-4 24-25 0.010232549866678663 26-27 0.02227754152672975 28-29 0.007103472235900655 30-31 3.147426396646858E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 9.671917801594577E-5 46-47 0.001861905903172666 48-49 0.03268926402846145 50-51 0.07186362611277394 52-53 0.05186332061037101 54-55 0.034506441202357775 56-57 0.00506778299596591 58-59 0.01536259964963798 60-61 0.0444551796649664 62-63 0.036047795148892246 64-65 3.445726816345977E-4 66-67 0.0067663466753387315 68-69 0.04071362343533676 70-71 0.0843126242089891 72-73 0.07180474505351335 74-75 0.0342581440110161 76-77 0.00733042258983469 78-79 8.488297305765931E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 2.5473005046584395E-5 88-89 1.425080167237044E-4 90-91 0.0019919982354325563 92-93 0.0033870558017443336 94-95 0.0010424070385517785 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 144.0 20-21 511.0 22-23 1227.0 24-25 2606.0 26-27 3495.0 28-29 5365.0 30-31 9496.0 32-33 10112.0 34-35 12344.0 36-37 13748.0 38-39 16534.0 40-41 20740.0 42-43 24852.0 44-45 32794.0 46-47 32236.0 48-49 25730.0 50-51 30516.0 52-53 32821.0 54-55 28303.0 56-57 35265.0 58-59 37464.0 60-61 24446.0 62-63 19649.0 64-65 39589.0 66-67 38600.0 68-69 19718.0 70-71 28471.0 72-73 38871.0 74-75 35108.0 76-77 27407.0 78-79 41869.0 80-81 51130.0 82-83 37635.0 84-85 60479.0 86-87 66549.0 88-89 67900.0 90-91 70047.0 92-93 72585.0 94-95 86296.0 96-97 244601.0 98-99 841521.0 100-101 2492649.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 90.32974561399344 #Duplication Level Percentage of deduplicated Percentage of total 1 92.9665174205746 83.97641869219393 2 5.376988258531812 9.714039631252163 3 1.0261625227273574 2.7807899890972787 4 0.3187919158691572 1.151855706570343 5 0.130728813816745 0.5904350248242843 6 0.06310606096968352 0.3420212660455604 7 0.035714749453762025 0.22582729629780843 8 0.020923789306148854 0.15120324522441778 9 0.0138023108818911 0.11220833077618289 >10 0.04500304361237447 0.6272297568549589 >50 0.001216233416205151 0.0743096959141542 >100 8.883236269598563E-4 0.17491997223630834 >500 1.5655721322407385E-4 0.07874139271259467 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.091427593835559E-5 0.0 0.0 0.0 3 0.0 2.091427593835559E-5 0.0 0.0 0.0 4 0.0 2.091427593835559E-5 0.0 0.0 0.0 5 0.0 6.274282781506677E-5 0.0 0.0 0.0 6 0.0 6.274282781506677E-5 0.0 0.0 0.0 7 0.0 6.274282781506677E-5 0.0 2.091427593835559E-5 0.0 8 0.0 6.274282781506677E-5 0.0 2.091427593835559E-5 0.0 9 0.0 1.4639993156848914E-4 0.0 2.091427593835559E-5 0.0 10-11 0.0 1.4639993156848914E-4 0.0 2.091427593835559E-5 0.0 12-13 0.0 1.6731420750684472E-4 0.0 2.091427593835559E-5 0.0 14-15 0.0 2.300570353219115E-4 0.0 2.091427593835559E-5 4.182855187671118E-5 16-17 0.0 2.7188558719862266E-4 0.0 3.1371413907533385E-5 4.182855187671118E-5 18-19 0.0 2.927998631369783E-4 0.0 5.2285689845888975E-5 4.182855187671118E-5 20-21 0.0 3.1371413907533386E-4 0.0 7.319996578424457E-5 5.2285689845888975E-5 22-23 0.0 3.4508555298286725E-4 0.0 1.2548565563013354E-4 6.274282781506677E-5 24-25 0.0 3.6599982892122283E-4 0.0 2.300570353219115E-4 6.274282781506677E-5 26-27 0.0 3.7645696689040065E-4 0.0 7.424567958116235E-4 8.365710375342236E-5 28-29 0.0 3.7645696689040065E-4 0.0 0.002049599041958848 8.365710375342236E-5 30-31 0.0 4.391997947054674E-4 0.0 0.006420682713075167 8.365710375342236E-5 32-33 0.0 4.391997947054674E-4 0.0 0.015100107227492738 9.411424172260015E-5 34-35 2.091427593835559E-5 4.914854845513563E-4 0.0 0.024856616952735618 1.0457137969177795E-4 36-37 2.091427593835559E-5 5.542283123664231E-4 0.0 0.0355542690952045 1.0457137969177795E-4 38-39 2.091427593835559E-5 5.751425883047788E-4 0.0 0.04653426396284119 1.0457137969177795E-4 40-41 2.091427593835559E-5 6.169711401814899E-4 0.0 0.055265974167104645 1.0457137969177795E-4 42-43 2.091427593835559E-5 6.692568300273789E-4 0.0 0.06191671391550173 1.1502851766095575E-4 44-45 2.091427593835559E-5 7.215425198732678E-4 0.0 0.06638191182834063 1.2548565563013354E-4 46-47 2.091427593835559E-5 7.319996578424457E-4 0.0 0.07012556722130629 1.4639993156848914E-4 48-49 2.091427593835559E-5 7.319996578424457E-4 0.0 0.07227973764295692 1.4639993156848914E-4 50-51 2.091427593835559E-5 7.842853476883346E-4 0.0 0.07494630782509726 1.4639993156848914E-4 52-53 2.091427593835559E-5 7.947424856575124E-4 0.0 0.07901413449510741 1.7777134547602253E-4 54-55 2.091427593835559E-5 8.051996236266902E-4 0.0 0.08351070382185387 2.091427593835559E-4 56-57 2.091427593835559E-5 8.15656761595868E-4 0.0 0.08680470228214487 2.091427593835559E-4 58-59 2.091427593835559E-5 8.574853134725792E-4 0.0 0.09036012919166533 2.091427593835559E-4 60-61 2.091427593835559E-5 8.574853134725792E-4 0.0 0.09350772772038785 2.091427593835559E-4 62-63 2.091427593835559E-5 8.574853134725792E-4 0.0 0.09542138396874739 2.091427593835559E-4 64-65 2.091427593835559E-5 0.001024799520979424 0.0 0.09760692580430554 2.091427593835559E-4 66-67 2.091427593835559E-5 0.001066628072856135 0.0 0.10136103833524036 2.091427593835559E-4 68-69 2.091427593835559E-5 0.001066628072856135 0.0 0.10427857982864097 2.091427593835559E-4 70-71 2.091427593835559E-5 0.001066628072856135 0.0 0.10595172190370941 2.091427593835559E-4 72-73 2.091427593835559E-5 0.001066628072856135 0.0 0.10805360663551417 2.091427593835559E-4 74-75 2.091427593835559E-5 0.0010875423487944906 0.0 0.1102914341609182 2.091427593835559E-4 76-77 2.091427593835559E-5 0.0011293709006712019 0.0 0.1120796047536476 2.091427593835559E-4 78-79 2.091427593835559E-5 0.0011502851766095575 0.0 0.11294754720508936 2.091427593835559E-4 80-81 2.091427593835559E-5 0.0011502851766095575 0.0 0.11359588975917839 2.091427593835559E-4 82-83 2.091427593835559E-5 0.0011502851766095575 0.0 0.11418148948545234 2.091427593835559E-4 84-85 2.091427593835559E-5 0.0011607423145787352 0.0 0.11458931786625028 2.091427593835559E-4 86-87 2.091427593835559E-5 0.0011711994525479131 0.0 0.11493440341923314 2.091427593835559E-4 88 2.091427593835559E-5 0.0011711994525479131 0.0 0.11496577483314067 2.091427593835559E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8795 0.0 54.07465 1 GTATCAA 16165 0.0 37.901943 1 ATCAACG 19215 0.0 31.421751 3 TCAACGC 19915 0.0 30.403452 4 AACGCAG 20090 0.0 30.094439 6 TATCAAC 20305 0.0 29.90181 2 ACGCAGA 20305 0.0 29.898855 7 CAACGCA 20270 0.0 29.812016 5 CGCAGAG 22495 0.0 27.72643 8 TGGTATC 3425 0.0 26.727531 2 GTGGTAT 3625 0.0 26.427183 1 GAGTACT 16940 0.0 23.97645 12-13 GCAGAGT 24660 0.0 23.830254 9 GTACATG 14670 0.0 23.10252 1 ACATGGG 14350 0.0 22.698862 3 TACATGG 14595 0.0 22.579681 2 CAGAGTA 23560 0.0 22.411194 10-11 GTACTTT 18620 0.0 21.28271 14-15 AGAGTAC 22175 0.0 21.246862 10-11 CATGGGG 10435 0.0 20.524813 4 >>END_MODULE