##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139417_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7523377 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.73308967502227 33.0 33.0 33.0 33.0 33.0 2 32.78227290749885 33.0 33.0 33.0 33.0 33.0 3 33.4451518247723 33.0 33.0 33.0 33.0 37.0 4 36.57807644093869 37.0 37.0 37.0 37.0 37.0 5 36.59614797982342 37.0 37.0 37.0 37.0 37.0 6 36.5539037854942 37.0 37.0 37.0 37.0 37.0 7 36.538322218865275 37.0 37.0 37.0 37.0 37.0 8 36.52673779341378 37.0 37.0 37.0 37.0 37.0 9 36.55290436728081 37.0 37.0 37.0 37.0 37.0 10-11 36.501732798981095 37.0 37.0 37.0 37.0 37.0 12-13 36.56943770064959 37.0 37.0 37.0 37.0 38.5 14-15 34.7130820374946 40.0 35.0 40.0 17.5 40.0 16-17 35.75154760953758 40.0 35.0 40.0 24.0 40.0 18-19 37.980303592389426 40.0 37.0 40.0 35.0 40.0 20-21 38.30892329750441 40.0 37.0 40.0 37.0 40.0 22-23 38.359000785804355 40.0 37.0 40.0 37.0 40.0 24-25 38.38071185499511 40.0 37.0 40.0 37.0 40.0 26-27 38.309988159599015 40.0 37.0 40.0 37.0 40.0 28-29 38.22828280809276 40.0 37.0 40.0 37.0 40.0 30-31 38.07724192778767 40.0 37.0 40.0 35.0 40.0 32-33 37.875161754290275 40.0 37.0 40.0 33.0 40.0 34-35 37.788268123365526 40.0 37.0 40.0 33.0 40.0 36-37 37.7305538246935 40.0 37.0 40.0 33.0 40.0 38-39 37.725076047425745 40.0 37.0 40.0 33.0 40.0 40-41 37.68733171009005 40.0 37.0 40.0 33.0 40.0 42-43 37.64654887639429 40.0 37.0 40.0 33.0 40.0 44-45 37.58937977724683 40.0 37.0 40.0 33.0 40.0 46-47 37.432861193099995 40.0 37.0 40.0 33.0 40.0 48-49 37.22407218573426 40.0 37.0 40.0 33.0 40.0 50-51 37.13543339109441 40.0 37.0 40.0 33.0 40.0 52-53 37.059975770165615 37.0 37.0 40.0 33.0 40.0 54-55 36.843899151954474 37.0 37.0 40.0 33.0 40.0 56-57 36.751797446259886 37.0 37.0 40.0 33.0 40.0 58-59 36.69774994130752 37.0 37.0 40.0 33.0 40.0 60-61 36.580196707923484 37.0 37.0 40.0 33.0 40.0 62-63 36.39639147817428 37.0 37.0 40.0 33.0 40.0 64-65 36.11809665320647 37.0 37.0 40.0 33.0 40.0 66-67 35.78883564037269 37.0 33.0 40.0 33.0 40.0 68-69 35.50141511525051 37.0 33.0 37.0 30.0 40.0 70-71 35.27427253384104 37.0 33.0 37.0 27.0 40.0 72-73 35.04338340261074 37.0 33.0 37.0 27.0 40.0 74-75 34.38900764013412 37.0 33.0 37.0 27.0 38.5 76-77 32.19179831737937 33.0 30.0 37.0 24.5 37.0 78-79 34.09245679197444 37.0 33.0 37.0 27.0 37.0 80-81 34.380258317558344 37.0 33.0 37.0 27.0 37.0 82-83 34.35442992188604 37.0 33.0 37.0 27.0 37.0 84-85 34.308572138095116 37.0 33.0 37.0 27.0 37.0 86-87 34.11580493752513 37.0 33.0 37.0 27.0 37.0 88-89 33.890104627464176 37.0 33.0 37.0 27.0 37.0 90-91 33.74726976225479 37.0 33.0 37.0 27.0 37.0 92-93 33.76062695792478 35.0 33.0 37.0 27.0 37.0 94-95 33.688973679564945 33.0 33.0 37.0 27.0 37.0 96-97 33.63263542239038 33.0 33.0 37.0 27.0 37.0 98-99 33.633104730454335 33.0 33.0 37.0 27.0 37.0 100 33.600744857963114 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 17.0 20 76.0 21 322.0 22 1262.0 23 3561.0 24 8425.0 25 17084.0 26 29917.0 27 48620.0 28 73514.0 29 103853.0 30 142027.0 31 190959.0 32 255612.0 33 348915.0 34 493277.0 35 765986.0 36 1336338.0 37 2283590.0 38 1384749.0 39 35270.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.250027580754455 0.0 24.369277990345275 29.380694428900274 2 15.046974400908745 23.93532511368269 38.88719564268751 22.13050484272106 3 16.531650704716597 25.216766347994792 32.97768747471192 25.27389547257669 4 12.699344401010773 23.419224603298343 37.566075958991135 26.315355036699746 5 16.98162412884483 36.69949160905045 32.32166440880545 13.997219853299278 6 27.534077239527605 37.78772754158719 20.229153236257787 14.44904198262742 7 25.62754857495133 33.198459403970745 22.691651374220058 18.482340646857864 8 24.127303388305084 32.17731429439586 22.23857582006027 21.456806497238784 9 24.15461447931972 20.566127369885425 23.34374194995942 31.935516200835433 10-11 24.750544134713977 26.26003733887069 28.404028142201426 20.58539038421391 12-13 25.32883253557406 24.3351332438308 28.35662477742063 21.979409443174507 14-15 22.80918823114409 26.191085493253517 26.954352684905857 24.04537359069653 16-17 21.264102627324313 28.850417096632075 27.80904292108736 22.076437354956248 18-19 21.201499167395063 27.628234983868943 30.05599480871354 21.11427104002246 20-21 22.318109789920975 26.999263983678702 29.97809630315631 20.70452992324401 22-23 21.950620745604684 26.78813482762451 29.877647049125915 21.38359737764489 24-25 21.63102597211205 27.00945763258322 30.1455487970002 21.213967598304524 26-27 21.60400961141849 27.381994522401865 29.89709239017951 21.116903476000136 28-29 21.395975514482913 27.360620569725846 29.969949229382888 21.273454686408353 30-31 21.831882961239305 27.207173119600046 29.898166981654605 21.06277693750604 32-33 21.64983871687086 27.519714146958652 29.69299269419955 21.137454441970938 34-35 21.576237430444227 27.46297784695313 29.722582861291563 21.238201861311076 36-37 21.767948211502528 27.511192909300703 29.554514406144783 21.166344473051986 38-39 21.496175856583818 27.718004531717977 29.605459666899826 21.180359944798383 40-41 21.893977089538986 27.47368035717433 29.315275764777983 21.317066788508704 42-43 21.951512984060788 27.439319649544448 29.188025217889436 21.421142148505336 44-45 21.802916861751136 28.2278321115668 28.565473550665438 21.403777476016625 46-47 22.091729191563218 27.756393053079126 28.02625405025239 22.125623705105266 48-49 22.065599272659483 27.910783960665924 28.127052055965308 21.89656471070928 50-51 21.829738078869962 28.225318632320544 27.854293294699513 22.090649994109985 52-53 22.15332529896154 28.024936735688883 27.780000639505058 22.041737325844522 54-55 22.113474083173415 28.085239072948763 27.714507751981877 22.08677909189594 56-57 22.299546324427755 28.389276425496195 27.3639878426217 21.94718940745435 58-59 22.107259302768302 28.181381704788272 27.766261691996487 21.945097300446943 60-61 22.21683394480992 28.23848357490669 27.615027564795408 21.92965491548798 62-63 22.0390202982483 28.433985911333558 27.49420845399207 22.03278533642607 64-65 22.004854792999485 28.20985198971276 27.50333948090491 22.28195373638285 66-67 22.094661619792124 28.264571834214564 27.49008139138584 22.150685154607473 68-69 22.198652482665537 28.369212143200922 27.548961562266495 21.883173811867046 70-71 22.22387478902829 27.809633433210074 27.43457261896294 22.531919158798694 72-73 22.197969828103574 27.95255022461089 27.45484839983987 22.394631547445666 74-75 22.008010439946236 28.07334910364955 27.678804352334385 22.23983610406982 76-77 22.2036172319446 27.87121545008388 27.299809197947855 22.62535812002367 78-79 22.174433878869493 27.96191672144846 27.27883007337416 22.58481932630789 80-81 22.194423742038584 28.12883597555409 27.32147395616137 22.355266326245953 82-83 22.472397020241058 27.689528539913606 27.403124165321785 22.43495027452355 84-85 22.533373223859627 27.720626927606855 27.349770711082904 22.39622913745061 86-87 22.048676939036564 28.02922562665059 27.321772021046105 22.600325413266738 88-89 22.527842153845768 27.819293287198043 27.384741185819067 22.268123373137122 90-91 22.489999429501236 27.865683953404663 27.45512950449922 22.189187112594883 92-93 22.2559615568731 27.71477006414588 27.489130374454874 22.54013800452615 94-95 22.537503181383332 27.695014155497706 27.380545798920302 22.386936864198663 96-97 22.359439094436702 27.996787200135337 27.748143397627008 21.895630307800957 98-99 23.276800451245414 30.185812217257364 27.241799137017637 19.295588194479592 100 22.674357327320635 30.343221949844658 21.57778273009714 25.404637992737573 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1534.0 1 1500.5 2 2886.5 3 4587.5 4 7100.5 5 13317.0 6 17954.5 7 19704.5 8 19840.5 9 17888.0 10 15398.0 11 13114.5 12 14159.5 13 19827.0 14 34158.5 15 55908.5 16 76097.5 17 88751.0 18 88493.5 19 78430.5 20 66141.0 21 54230.0 22 46004.5 23 43979.0 24 46672.5 25 54135.0 26 68032.5 27 83813.0 28 96139.5 29 109461.5 30 120956.0 31 130163.0 32 145885.0 33 163233.0 34 180790.5 35 198599.5 36 218843.0 37 237167.5 38 244189.0 39 249457.0 40 258124.0 41 262519.0 42 263681.5 43 268634.5 44 275586.0 45 281792.0 46 286484.5 47 290568.5 48 292914.0 49 293069.5 50 290534.5 51 283880.0 52 273446.5 53 259403.0 54 245097.5 55 230089.5 56 210402.5 57 189694.0 58 168822.0 59 147864.5 60 123737.5 61 96183.0 62 73056.5 63 54382.0 64 39611.0 65 29243.0 66 21660.5 67 16252.5 68 12196.0 69 8927.5 70 6893.5 71 5177.5 72 3786.0 73 2745.0 74 1966.5 75 1403.0 76 1000.5 77 727.0 78 501.0 79 334.0 80 232.5 81 153.5 82 112.0 83 79.5 84 60.5 85 46.0 86 32.0 87 21.5 88 15.0 89 13.5 90 13.5 91 10.5 92 7.5 93 6.0 94 4.5 95 3.5 96 3.0 97 3.0 98 2.5 99 2.0 100 2.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 1.9937855035046095E-4 2 3.1900568056073757E-4 3 9.171413316121204E-4 4 3.7217329398752714E-4 5 4.386328107710142E-4 6 3.588813906308298E-4 7 7.310546846183569E-4 8 7.70930394688449E-4 9 0.0016349041128737802 10-11 0.00868625884360175 12-13 0.24176643015496896 14-15 7.494267534379841 16-17 6.6459516783486996E-6 18-19 1.3291903356697399E-5 20-21 6.646345244536654E-6 22-23 3.3237677513295235E-4 24-25 0.011071649933181096 26-27 0.02266179630997292 28-29 0.007338989105530402 30-31 6.0037903930014486E-5 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 2.0451576257519704E-5 44-45 4.119083811410219E-5 46-47 0.0016136686181206816 48-49 0.030392107076890492 50-51 0.07309526433204099 52-53 0.05431426508104647 54-55 0.03254618232782885 56-57 0.003928703776523859 58-59 0.013045400879616262 60-61 0.03874422770239171 62-63 0.032000783740551375 64-65 3.843141300924024E-4 66-67 0.007036999076972817 68-69 0.04430599345291074 70-71 0.0924396145932372 72-73 0.07834523206341161 74-75 0.03672602555430802 76-77 0.007475288196965173 78-79 7.238618786560434E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 1.5951153872889788E-4 90-91 0.0021318632459186968 92-93 0.003382009409617359 94-95 7.958922057745693E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 260.0 20-21 1052.0 22-23 2101.0 24-25 3780.0 26-27 6010.0 28-29 10857.0 30-31 16947.0 32-33 19343.0 34-35 24677.0 36-37 26188.0 38-39 28101.0 40-41 37634.0 42-43 49152.0 44-45 60582.0 46-47 65383.0 48-49 46964.0 50-51 41122.0 52-53 48977.0 54-55 46126.0 56-57 47741.0 58-59 42175.0 60-61 67227.0 62-63 49696.0 64-65 65551.0 66-67 74811.0 68-69 46392.0 70-71 60202.0 72-73 70126.0 74-75 52067.0 76-77 42614.0 78-79 61498.0 80-81 81379.0 82-83 78674.0 84-85 84830.0 86-87 85605.0 88-89 89861.0 90-91 96529.0 92-93 106373.0 94-95 138956.0 96-97 406815.0 98-99 1324849.0 100-101 3814150.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.25124308628128 #Duplication Level Percentage of deduplicated Percentage of total 1 88.62750693462995 72.89722617011327 2 7.532872457592056 12.391762472947143 3 2.0850915205003893 5.145041085294641 4 0.7837337506155774 2.578523009472192 5 0.36426196677181194 1.4980499788017607 6 0.19879238094166835 0.9810552269120273 7 0.11288740283063257 0.6499590448120922 8 0.07587406984251212 0.4992589250049558 9 0.05037384703455795 0.3728980383867518 >10 0.16223844029209372 2.089013381190715 >50 0.0038455681383016997 0.2104015024237552 >100 0.002032644315568335 0.3097530682403242 >500 2.4450828780502357E-4 0.13610193185226543 >1k 2.445082071025047E-4 0.2409561645481217 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.3291903356697397E-5 0.0 3 0.0 0.0 0.0 1.3291903356697397E-5 0.0 4 0.0 0.0 0.0 2.6583806713394795E-5 0.0 5 0.0 2.6583806713394795E-5 0.0 2.6583806713394795E-5 0.0 6 0.0 3.9875710070092196E-5 0.0 6.645951678348698E-5 0.0 7 0.0 3.9875710070092196E-5 0.0 6.645951678348698E-5 0.0 8 0.0 3.9875710070092196E-5 0.0 6.645951678348698E-5 0.0 9 0.0 3.9875710070092196E-5 0.0 6.645951678348698E-5 0.0 10-11 6.645951678348699E-6 3.9875710070092196E-5 0.0 1.0633522685357918E-4 0.0 12-13 1.3291903356697397E-5 3.9875710070092196E-5 0.0 1.1298117853192788E-4 0.0 14-15 1.3291903356697397E-5 7.310546846183569E-5 0.0 1.4621093692367138E-4 0.0 16-17 1.3291903356697397E-5 1.1298117853192788E-4 0.0 1.661487919587175E-4 0.0 18-19 1.3291903356697397E-5 1.5285688860202008E-4 0.0 2.8577592216899405E-4 0.0 20-21 1.3291903356697397E-5 1.7279474363706616E-4 0.0 4.253409074143167E-4 0.0 22-23 1.3291903356697397E-5 1.7279474363706616E-4 0.0 7.842222980451465E-4 0.0 24-25 1.3291903356697397E-5 1.8608664699376357E-4 0.0 0.0016415500645521287 0.0 26-27 1.3291903356697397E-5 1.8608664699376357E-4 0.0 0.0034625408244196723 0.0 28-29 1.3291903356697397E-5 1.8608664699376357E-4 0.0 0.007975142014018438 0.0 30-31 1.3291903356697397E-5 1.9937855035046095E-4 0.0 0.010480665796755897 0.0 32-33 1.3291903356697397E-5 2.1931640538550706E-4 0.0 0.014062833751385846 0.0 34-35 1.3291903356697397E-5 2.5254616377725053E-4 0.0 0.018223199502032134 0.0 36-37 2.6583806713394795E-5 2.7912997049064534E-4 0.0 0.02346020942457091 0.0 38-39 2.6583806713394795E-5 3.1235972888238886E-4 0.0 0.030930259111034846 0.0 40-41 2.6583806713394795E-5 3.2565163223908627E-4 0.0 0.03880571184987805 6.645951678348699E-6 42-43 2.6583806713394795E-5 3.32297583917435E-4 0.0 0.04794389540760752 1.3291903356697397E-5 44-45 2.6583806713394795E-5 3.389435355957836E-4 0.0 0.0579859283935924 1.3291903356697397E-5 46-47 2.6583806713394795E-5 3.5888139063082973E-4 0.0 0.0678950423460103 1.3291903356697397E-5 48-49 2.6583806713394795E-5 3.7217329398752714E-4 0.0 0.08066191552011816 1.3291903356697397E-5 50-51 2.6583806713394795E-5 5.183842309111986E-4 0.0 0.09320282633716215 1.3291903356697397E-5 52-53 2.6583806713394795E-5 5.582599409812907E-4 0.0 0.12255134894875001 1.3291903356697397E-5 54-55 2.6583806713394795E-5 5.582599409812907E-4 0.0 0.16389581433975725 1.3291903356697397E-5 56-57 2.6583806713394795E-5 6.114275544080803E-4 0.0 0.20585835323685095 1.3291903356697397E-5 58-59 2.6583806713394795E-5 6.180735060864291E-4 0.0 0.38011520624315387 1.3291903356697397E-5 60-61 2.6583806713394795E-5 6.380113611214751E-4 0.0 0.4901389362782166 1.3291903356697397E-5 62-63 2.6583806713394795E-5 6.579492161565212E-4 0.0 0.49689786913509715 1.3291903356697397E-5 64-65 2.6583806713394795E-5 7.244087329400081E-4 0.0 0.5010582348857435 1.3291903356697397E-5 66-67 2.6583806713394795E-5 7.576384913317517E-4 0.0 0.5062022014847853 1.3291903356697397E-5 68-69 2.6583806713394795E-5 7.576384913317517E-4 0.0 0.5105353619790687 1.3291903356697397E-5 70-71 2.6583806713394795E-5 7.576384913317517E-4 0.0 0.5139580270934183 1.3291903356697397E-5 72-73 2.6583806713394795E-5 7.576384913317517E-4 0.0 0.517460443627908 1.3291903356697397E-5 74-75 2.6583806713394795E-5 7.576384913317517E-4 0.0 0.5205042894965917 1.3291903356697397E-5 76-77 2.6583806713394795E-5 7.908682497234953E-4 0.0 0.5228037887773004 1.3291903356697397E-5 78-79 2.6583806713394795E-5 7.975142014018439E-4 0.0 0.5242725440982154 1.3291903356697397E-5 80-81 2.6583806713394795E-5 8.307439597935874E-4 0.0 0.5249437852177288 1.3291903356697397E-5 82-83 2.6583806713394795E-5 8.37389911471936E-4 0.0 0.5257014237090605 1.3291903356697397E-5 84-85 2.6583806713394795E-5 8.37389911471936E-4 0.0 0.5262397457950067 1.3291903356697397E-5 86-87 2.6583806713394795E-5 8.37389911471936E-4 0.0 0.5266052731373159 1.3291903356697397E-5 88 2.6583806713394795E-5 8.37389911471936E-4 0.0 0.5266385028957076 1.3291903356697397E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15175 0.0 47.73568 1 GTATCAA 26875 0.0 36.89683 1 ATCAACG 32650 0.0 30.099358 3 ACGCAGA 34085 0.0 29.026577 7 AACGCAG 34455 0.0 28.562592 6 TCAACGC 34500 0.0 28.510181 4 TATCAAC 34765 0.0 28.389063 2 CAACGCA 34980 0.0 28.098188 5 CGCAGAG 38120 0.0 26.609001 8 GCAGAGT 40365 0.0 23.381754 9 TACATGG 26330 0.0 23.054556 2 GAGTACT 25845 0.0 22.813692 12-13 GTACATG 28185 0.0 22.421171 1 ACATGGG 26345 0.0 22.336853 3 AGACCGA 4960 0.0 21.153738 88-89 CAGAGTA 39090 0.0 21.085453 10-11 AGAGTAC 37385 0.0 20.85896 10-11 ACCGAGG 5215 0.0 20.799925 90-91 CATGGGG 18565 0.0 20.283043 4 AGTACTT 27900 0.0 20.159317 12-13 >>END_MODULE