##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139415_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6234694 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.7715947246168 33.0 33.0 33.0 33.0 33.0 2 32.77846338569303 33.0 33.0 33.0 33.0 33.0 3 32.763766273052056 33.0 33.0 33.0 33.0 33.0 4 36.70710848038412 37.0 37.0 37.0 37.0 37.0 5 36.72649852582982 37.0 37.0 37.0 37.0 37.0 6 36.692558608329456 37.0 37.0 37.0 37.0 37.0 7 36.67192423557596 37.0 37.0 37.0 37.0 37.0 8 36.677534935956764 37.0 37.0 37.0 37.0 37.0 9 36.686310346586374 37.0 37.0 37.0 37.0 37.0 10-11 36.635638974422804 37.0 37.0 37.0 37.0 37.0 12-13 36.606922168112824 37.0 37.0 37.0 37.0 37.0 14-15 35.450771280835916 40.0 37.0 40.0 19.5 40.0 16-17 35.759926790312406 40.0 37.0 40.0 24.0 40.0 18-19 38.244057847907214 40.0 37.0 40.0 37.0 40.0 20-21 38.609261635599836 40.0 37.0 40.0 37.0 40.0 22-23 38.652567896073684 40.0 37.0 40.0 37.0 40.0 24-25 38.6857343352232 40.0 37.0 40.0 37.0 40.0 26-27 38.63555288464636 40.0 37.0 40.0 37.0 40.0 28-29 38.569762293614886 40.0 37.0 40.0 37.0 40.0 30-31 38.446151192927886 40.0 37.0 40.0 37.0 40.0 32-33 38.26773614452942 40.0 37.0 40.0 37.0 40.0 34-35 38.188228264030094 40.0 37.0 40.0 37.0 40.0 36-37 38.11623811623562 40.0 37.0 40.0 37.0 40.0 38-39 38.11833351165766 40.0 37.0 40.0 37.0 40.0 40-41 38.06198281336762 40.0 37.0 40.0 37.0 40.0 42-43 38.013934887471294 40.0 37.0 40.0 33.0 40.0 44-45 37.96194085602018 40.0 37.0 40.0 33.0 40.0 46-47 37.822508700745196 40.0 37.0 40.0 33.0 40.0 48-49 37.608412901416386 40.0 37.0 40.0 33.0 40.0 50-51 37.519403489757366 40.0 37.0 40.0 33.0 40.0 52-53 37.444785163030474 40.0 37.0 40.0 33.0 40.0 54-55 37.23633090884489 38.5 37.0 40.0 33.0 40.0 56-57 37.13153634295922 37.0 37.0 40.0 33.0 40.0 58-59 37.07231918670564 37.0 37.0 40.0 33.0 40.0 60-61 36.944207666557006 37.0 37.0 40.0 33.0 40.0 62-63 36.757517121371414 37.0 37.0 40.0 33.0 40.0 64-65 36.49145166509458 37.0 37.0 40.0 33.0 40.0 66-67 36.16611774782248 37.0 37.0 40.0 33.0 40.0 68-69 35.87390641563657 37.0 35.0 38.5 33.0 40.0 70-71 35.63506044476115 37.0 33.0 37.0 33.0 40.0 72-73 35.42011414192875 37.0 33.0 37.0 33.0 40.0 74-75 35.13534186938311 37.0 33.0 37.0 33.0 40.0 76-77 32.27296329714134 33.0 30.0 35.0 27.0 37.0 78-79 34.40326795659521 37.0 33.0 37.0 27.0 37.0 80-81 34.72340573122032 37.0 33.0 37.0 33.0 37.0 82-83 34.701039912319786 37.0 33.0 37.0 33.0 37.0 84-85 34.6616012273452 37.0 33.0 37.0 33.0 37.0 86-87 34.496320727871854 37.0 33.0 37.0 33.0 37.0 88-89 34.2759022392717 37.0 33.0 37.0 27.0 37.0 90-91 34.12255806744233 37.0 33.0 37.0 27.0 37.0 92-93 34.13333143919544 37.0 33.0 37.0 27.0 37.0 94-95 34.06244245603732 37.0 33.0 37.0 27.0 37.0 96-97 33.99142527191227 37.0 33.0 37.0 27.0 37.0 98-99 33.97550940383835 33.0 33.0 37.0 27.0 37.0 100 34.02094368236464 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 0.0 17 0.0 18 2.0 19 13.0 20 40.0 21 157.0 22 610.0 23 1823.0 24 4320.0 25 9199.0 26 16751.0 27 27878.0 28 43175.0 29 63150.0 30 89182.0 31 124231.0 32 171901.0 33 245063.0 34 360985.0 35 590362.0 36 1104875.0 37 2057976.0 38 1301046.0 39 21954.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.960422218604464 19.663270878961807 14.106229905761078 23.270076996672646 2 14.903536856294192 20.99215979826329 41.501935710698625 22.602367634743896 3 18.49924966974562 26.199293361485953 30.17918746194616 25.122269506822263 4 12.785476307639797 17.97250471075605 38.25398561719726 30.988033364406892 5 13.636324267172398 37.705683975103156 34.925014667939976 13.732977089784473 6 30.140404645360302 37.60819697005178 18.520957083058125 13.730441301529794 7 26.714238100538694 33.085104096528234 22.56840512140612 17.632252681526953 8 24.7891716899017 36.48406802322616 20.744658839712102 17.982101447160037 9 26.119004397008094 16.858982974946322 21.01650858887381 36.00550403917177 10-11 24.644224720571692 26.778331061636706 28.16827898851171 20.409165229279896 12-13 25.64615841611473 24.52197333181067 28.456953941925615 21.37491431014898 14-15 22.840919798205892 25.401642621867143 26.472192632082713 25.285244947844255 16-17 21.953451123663807 28.746454918236562 27.06764758623278 22.232446371866846 18-19 21.922134430334513 27.558313206710704 29.328167509103093 21.191384853851687 20-21 22.739005239297168 26.712251203960463 29.39473638623231 21.15400717051006 22-23 22.447984494407905 26.723733007872468 29.252503600635393 21.57577889708423 24-25 22.193354687890803 26.894441302075407 29.307721879985287 21.6044821300485 26-27 22.11590783777788 27.042215364593808 29.253186280000488 21.58869051762783 28-29 22.05525645336911 27.10259982451791 29.242374313483765 21.599769408629214 30-31 22.307761648157413 26.964515737604128 29.1552544333315 21.57246818090696 32-33 22.16204430686833 27.16547064368739 29.04290024994378 21.6295847995005 34-35 22.265045785688745 27.160055877124556 29.06441645387809 21.51048188330861 36-37 22.273555370389847 27.141951089286724 28.878564552272014 21.70592898805142 38-39 22.133018414278386 27.29888841264846 28.948935748675513 21.619157424397642 40-41 22.44272385971695 27.120811501012344 28.75768311170348 21.678781527567224 42-43 22.35339225960946 27.284752441977794 28.472776315389485 21.889078983023257 44-45 22.384569121227837 27.43758213741045 28.24533305128922 21.932515690072496 46-47 22.625529805364707 27.479462671805965 27.73493238788473 22.1600751349446 48-49 22.490770638211842 27.71177446119349 27.607814876852416 22.189640023742253 50-51 22.49294571142296 27.855072531466114 27.468041745506426 22.1839400116045 52-53 22.69609706560202 27.74127961024818 27.330150976258892 22.2324723478909 54-55 22.617914465657964 27.75155594230978 27.32192609987012 22.30860349216214 56-57 22.672844495213926 27.87201534783188 27.229476746246146 22.225663410708048 58-59 22.593593710990067 27.82950201877857 27.272010575823302 22.30489369440806 60-61 22.66367948524359 27.83962332595938 27.323771378929123 22.172925809867902 62-63 22.66044795331674 28.010804084785036 27.18167853771561 22.147069424182614 64-65 22.614932419279484 27.94349009608726 27.13664069512436 22.304936789508897 66-67 22.699640713832775 27.910590733828883 27.041010159693084 22.34875839264526 68-69 22.63455629121884 27.942354037556825 27.112295179427683 22.310794491796653 70-71 22.685884255214596 27.7004693478844 27.12043296138143 22.493213435519575 72-73 22.730581424495046 27.74079796380286 26.99899282592302 22.52962778577907 74-75 22.60820699392028 27.86902141446324 26.985058133172597 22.537713458443886 76-77 22.76498891518894 27.766691110998963 26.94579127007821 22.52252870373388 78-79 22.663789324672617 27.77334113407876 26.968780312777934 22.594089228470686 80-81 22.732222937238696 27.863396351818707 26.898114968857158 22.50626574208544 82-83 22.79109856275436 27.787868823198085 26.99385772662698 22.427174887420573 84-85 22.816866607879852 27.750165127655734 26.933086947046636 22.49988131741778 86-87 22.699576965421457 27.8316326361232 27.001195241759724 22.467595156695616 88-89 22.774544626102294 27.749503494810597 26.95457478647964 22.52137709260747 90-91 22.83210117681719 27.774921673996317 26.963975628466514 22.429001520719982 92-93 22.834671304500667 27.67516586697985 27.038042921935286 22.452119906584198 94-95 22.76563174148462 27.76927777566763 27.01413475958221 22.450955723265547 96-97 22.83250457937923 27.84360687972075 27.053758556359636 22.27012998454039 98-99 23.01072419238387 28.671558871543652 26.02527704783183 22.292439888240647 100 21.114212526211503 27.979443096146582 27.26843506730232 23.63790931033959 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1343.0 1 1250.5 2 1914.0 3 2897.0 4 4146.5 5 7127.5 6 9543.5 7 10912.5 8 11857.0 9 11735.5 10 11070.5 11 10441.0 12 11442.5 13 15403.0 14 24559.5 15 36975.5 16 47721.0 17 54587.5 18 55061.5 19 49850.5 20 42627.5 21 35131.5 22 29389.5 23 27577.5 24 29621.0 25 35374.5 26 43680.0 27 52803.0 28 63618.0 29 76216.5 30 88395.0 31 100502.0 32 114478.0 33 128408.5 34 141272.5 35 153003.0 36 165806.5 37 178750.0 38 188836.0 39 197158.5 40 205205.0 41 213385.5 42 218442.0 43 222430.0 44 227206.0 45 232256.5 46 237034.5 47 239226.0 48 240598.0 49 240211.5 50 236902.5 51 233197.5 52 226900.0 53 216624.0 54 205577.0 55 193967.5 56 179784.0 57 162661.5 58 145362.0 59 127878.5 60 107941.5 61 88799.5 62 71824.0 63 56043.0 64 42306.5 65 31539.0 66 24059.5 67 18799.0 68 14406.0 69 10439.0 70 7541.5 71 5629.5 72 4085.0 73 2845.0 74 1950.0 75 1385.5 76 992.5 77 667.0 78 452.0 79 327.0 80 234.5 81 175.0 82 134.5 83 102.5 84 76.0 85 51.5 86 34.5 87 27.5 88 21.0 89 10.5 90 4.5 91 2.5 92 1.5 93 1.5 94 2.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content warn #Base N-Count 1 1.4435351598651033E-4 2 5.292962252838712E-4 3 0.0017001636327300105 4 4.170212684054743E-4 5 1.2831423643245362E-4 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 7.48292538495073 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.008529005680012889 26-27 0.02317545658940765 28-29 0.008570927558311426 30-31 1.1257761321789839E-4 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.02666388762138774 50-51 0.06760270150731518 52-53 0.05728508680192428 54-55 0.03898783122862303 56-57 0.005466606961420265 58-59 0.011005370739714497 60-61 0.039439230015022274 62-63 0.04055678773771356 64-65 0.0 66-67 0.002818601832560958 68-69 0.03161822089609386 70-71 0.08389161732882909 72-73 0.075541095148212 74-75 0.03689704379809113 76-77 0.008286853682960324 78-79 0.0011711875869368459 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0015691434222586526 92-93 0.0032555655941042707 94-95 0.0011812176215266728 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 151.0 20-21 622.0 22-23 1324.0 24-25 3108.0 26-27 3672.0 28-29 5716.0 30-31 9645.0 32-33 11011.0 34-35 14956.0 36-37 16912.0 38-39 19257.0 40-41 23248.0 42-43 27889.0 44-45 35351.0 46-47 34195.0 48-49 24088.0 50-51 22149.0 52-53 20352.0 54-55 25792.0 56-57 30780.0 58-59 44743.0 60-61 23533.0 62-63 29596.0 64-65 39896.0 66-67 52971.0 68-69 39231.0 70-71 47578.0 72-73 41395.0 74-75 39044.0 76-77 27926.0 78-79 37982.0 80-81 48906.0 82-83 62736.0 84-85 77530.0 86-87 81511.0 88-89 88108.0 90-91 91982.0 92-93 94545.0 94-95 105512.0 96-97 243759.0 98-99 40755.0 100-101 4545237.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.21612256529717 #Duplication Level Percentage of deduplicated Percentage of total 1 92.1218748552211 81.26634603173152 2 5.697227833487472 10.051746976827065 3 1.225586910609401 3.2434957536222853 4 0.43718623035635507 1.5426749632390586 5 0.18566956514133504 0.818952455757672 6 0.10402742753714621 0.5506137778661675 7 0.06294329425336041 0.3886829352362605 8 0.03829047603917994 0.2702269861884698 9 0.026045444197448357 0.20678652878307413 >10 0.09789745838576437 1.3707421825069315 >50 0.002472860824677757 0.14455264611966331 >100 7.497054789855984E-4 0.12292321376390598 >500 2.793846775154854E-5 0.02225554835797859 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.6039279554056702E-5 0.0 2 0.0 4.8117838662170106E-5 0.0 1.6039279554056702E-5 0.0 3 0.0 4.8117838662170106E-5 0.0 1.6039279554056702E-5 0.0 4 0.0 9.623567732434021E-5 0.0 1.6039279554056702E-5 0.0 5 0.0 1.1227495687839691E-4 0.0 1.6039279554056702E-5 0.0 6 0.0 1.1227495687839691E-4 0.0 3.2078559108113404E-5 0.0 7 0.0 1.1227495687839691E-4 0.0 4.8117838662170106E-5 0.0 8 0.0 1.1227495687839691E-4 0.0 4.8117838662170106E-5 0.0 9 0.0 2.0851063420273714E-4 0.0 6.415711821622681E-5 0.0 10-11 0.0 2.0851063420273714E-4 0.0 9.623567732434021E-5 0.0 12-13 8.019639777028351E-6 2.0851063420273714E-4 0.0 1.1227495687839691E-4 8.019639777028351E-6 14-15 1.6039279554056702E-5 2.0851063420273714E-4 0.0 1.1227495687839691E-4 5.613747843919846E-5 16-17 1.6039279554056702E-5 2.0851063420273714E-4 0.0 1.2831423643245362E-4 8.019639777028351E-5 18-19 1.6039279554056702E-5 2.325695535338222E-4 0.0 1.6039279554056705E-4 8.019639777028351E-5 20-21 1.6039279554056702E-5 2.5662847286490723E-4 0.0 2.5662847286490723E-4 8.019639777028351E-5 22-23 1.6039279554056702E-5 2.806873921959923E-4 0.0 4.0900162862844594E-4 8.019639777028351E-5 24-25 1.6039279554056702E-5 3.0474631152707735E-4 0.0 9.543371334663738E-4 8.019639777028351E-5 26-27 1.6039279554056702E-5 3.0474631152707735E-4 0.0 0.0020851063420273715 8.019639777028351E-5 28-29 1.6039279554056702E-5 3.0474631152707735E-4 0.0 0.007105400842447119 8.019639777028351E-5 30-31 1.6039279554056702E-5 3.6890342974330416E-4 0.0 0.010305237113481431 8.019639777028351E-5 32-33 2.4058919331085053E-5 3.6890342974330416E-4 0.0 0.01794795382098945 1.1227495687839691E-4 34-35 3.2078559108113404E-5 4.4909982751358766E-4 0.0 0.028429623009565506 1.1227495687839691E-4 36-37 3.2078559108113404E-5 5.132569457298145E-4 0.0 0.042239442705608324 1.1227495687839691E-4 38-39 3.2078559108113404E-5 5.292962252838712E-4 0.0 0.06576906581140951 1.1227495687839691E-4 40-41 3.2078559108113404E-5 6.415711821622681E-4 0.0 0.0833320769231016 1.1227495687839691E-4 42-43 3.2078559108113404E-5 6.977086606014665E-4 0.0 0.09325237132728567 1.2831423643245362E-4 44-45 3.2078559108113404E-5 8.581014561420337E-4 0.0 0.10134418786230728 1.4435351598651033E-4 46-47 4.8117838662170106E-5 9.623567732434022E-4 0.0 0.10969263287019379 1.5237315576353868E-4 48-49 4.8117838662170106E-5 9.703764130204305E-4 0.0 0.11595597153605293 1.6039279554056702E-4 50-51 4.8117838662170106E-5 0.001074631730121799 0.0 0.1216017979390809 1.6039279554056702E-4 52-53 4.8117838662170106E-5 0.0010906710096758557 0.0 0.143415218132598 1.6039279554056702E-4 54-55 4.8117838662170106E-5 0.0010906710096758557 0.0 0.16728968574881142 1.6039279554056702E-4 56-57 4.8117838662170106E-5 0.0010906710096758557 0.0 0.19493338406022814 1.684124353175954E-4 58-59 4.8117838662170106E-5 0.0011067102892299125 0.0 0.21894418555265102 1.8445171487165208E-4 60-61 4.8117838662170106E-5 0.0011147299290069409 0.0 0.23673976621787693 1.9247135464868043E-4 62-63 4.8117838662170106E-5 0.0011227495687839693 0.0 0.2453608789781824 1.9247135464868043E-4 64-65 4.8117838662170106E-5 0.001299181643878593 0.0 0.24760637811575034 1.9247135464868043E-4 66-67 4.8117838662170106E-5 0.001299181643878593 0.0 0.25083829294589277 1.9247135464868043E-4 68-69 4.8117838662170106E-5 0.001323240563209678 0.0 0.2550325645492786 2.0049099442570877E-4 70-71 4.8117838662170106E-5 0.0013553191223177913 0.0 0.25746251540171816 2.0851063420273714E-4 72-73 4.8117838662170106E-5 0.0013713584018718481 0.0 0.25970801453928616 2.0851063420273714E-4 74-75 4.8117838662170106E-5 0.00141145660075699 0.0 0.2614001585322391 2.0851063420273714E-4 76-77 4.8117838662170106E-5 0.0014996726383043016 0.0 0.26281963477277315 2.0851063420273714E-4 78-79 5.613747843919846E-5 0.0015477904769664718 0.0 0.2638621879437868 2.0851063420273714E-4 80-81 6.415711821622681E-5 0.0015558101167435002 0.0 0.264207032454199 2.1653027397976549E-4 82-83 6.415711821622681E-5 0.0015558101167435002 0.0 0.26483256435680724 2.325695535338222E-4 84-85 6.415711821622681E-5 0.0015638297565205286 0.0 0.2656425479742871 2.4058919331085055E-4 86-87 6.415711821622681E-5 0.0015718493962975568 0.0 0.2661237263609088 2.4058919331085055E-4 88 6.415711821622681E-5 0.0016039279554056704 0.0 0.26617184419957096 2.4058919331085055E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10365 0.0 53.333683 1 GTATCAA 19000 0.0 38.497276 1 TCAACGC 23635 0.0 30.50795 4 ATCAACG 23895 0.0 30.140034 3 TATCAAC 24340 0.0 29.784716 2 CAACGCA 24195 0.0 29.783957 5 AACGCAG 24490 0.0 29.44285 6 CGCAGAG 26970 0.0 26.704245 8 ACGCAGA 27840 0.0 25.853367 7 GTGGTAT 4535 0.0 25.276014 1 TGGTATC 4410 0.0 23.834593 2 GTACATG 19600 0.0 23.790451 1 TACATGG 20140 0.0 23.088142 2 GCAGAGT 29925 0.0 23.078411 9 GAGTACT 18975 0.0 22.32258 12-13 ACATGGG 20610 0.0 21.847878 3 CAGAGTA 28335 0.0 21.530767 10-11 AGAGTAC 26455 0.0 21.197527 10-11 GTACTTT 20975 0.0 20.182734 14-15 AGTACTT 20390 0.0 19.465 12-13 >>END_MODULE