##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139403_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5824671 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.327142425726706 32.0 25.0 33.0 18.0 34.0 2 32.09194751085512 33.0 32.0 33.0 31.0 34.0 3 32.684353330857654 33.0 33.0 33.0 31.0 34.0 4 32.96560440924475 33.0 33.0 34.0 33.0 34.0 5 33.27675520213931 34.0 33.0 34.0 33.0 34.0 6 36.88848898075101 38.0 37.0 38.0 35.0 38.0 7 37.0084236517393 38.0 38.0 38.0 35.0 38.0 8 36.96053614015281 38.0 38.0 38.0 35.0 38.0 9 37.22497270661296 38.0 38.0 38.0 36.0 38.0 10-11 37.32618803705823 38.0 38.0 38.0 37.0 38.0 12-13 37.42824959555655 38.0 38.0 38.0 37.0 38.0 14-15 37.402065369872396 38.0 38.0 38.0 37.0 38.0 16-17 37.41935098136874 38.0 38.0 38.0 37.0 38.0 18-19 37.44392198288968 38.0 38.0 38.0 37.0 38.0 20-21 37.459261019470745 38.0 38.0 38.0 37.0 38.0 22-23 37.47397780061699 38.0 38.0 38.0 37.0 38.0 24-25 37.4897071389456 38.0 38.0 38.0 37.0 38.0 26-27 37.46048257077314 38.0 38.0 38.0 37.0 38.0 28-29 37.44121209861354 38.0 38.0 38.0 37.0 38.0 30-31 37.44336659824563 38.0 38.0 38.0 37.0 38.0 32-33 37.417667399972935 38.0 38.0 38.0 37.0 38.0 34-35 37.39261452680914 38.0 38.0 38.0 37.0 38.0 36-37 37.36608996172251 38.0 38.0 38.0 37.0 38.0 38-39 37.337283655605916 38.0 38.0 38.0 37.0 38.0 40-41 37.365293521212834 38.0 38.0 38.0 37.0 38.0 42-43 37.33866719863851 38.0 38.0 38.0 37.0 38.0 44-45 37.30386620928333 38.0 38.0 38.0 37.0 38.0 46-47 37.268086031232954 38.0 38.0 38.0 37.0 38.0 48-49 37.217505065131206 38.0 38.0 38.0 37.0 38.0 50-51 37.14682767442558 38.0 38.0 38.0 37.0 38.0 52-53 37.139822733793665 38.0 38.0 38.0 36.5 38.0 54-55 37.08186490957905 38.0 38.0 38.0 36.5 38.0 56-57 37.05733845599593 38.0 38.0 38.0 36.0 38.0 58-59 37.058865010662885 38.0 38.0 38.0 36.0 38.0 60-61 37.06728460979259 38.0 38.0 38.0 36.0 38.0 62-63 37.073840812973444 38.0 38.0 38.0 36.0 38.0 64-65 37.08311147754681 38.0 38.0 38.0 36.0 38.0 66-67 37.07907452050577 38.0 38.0 38.0 36.0 38.0 68-69 37.0692569911259 38.0 38.0 38.0 36.0 38.0 70-71 37.06815869921948 38.0 38.0 38.0 36.0 38.0 72-73 37.06961816440534 38.0 38.0 38.0 36.0 38.0 74-75 37.06396006368119 38.0 38.0 38.0 36.0 38.0 76-77 37.06068741220577 38.0 38.0 38.0 36.0 38.0 78-79 37.04045140204235 38.0 38.0 38.0 36.0 38.0 80-81 37.0372323476593 38.0 38.0 38.0 36.0 38.0 82-83 36.989488502870444 38.0 38.0 38.0 36.0 38.0 84-85 36.97203885246982 38.0 38.0 38.0 36.0 38.0 86-87 36.96983515441357 38.0 38.0 38.0 36.0 38.0 88-89 36.94934424631446 38.0 38.0 38.0 35.5 38.0 90-91 36.947400976351126 38.0 38.0 38.0 35.0 38.0 92-93 36.94744753910608 38.0 38.0 38.0 35.0 38.0 94-95 36.956570892194684 38.0 38.0 38.0 35.0 38.0 96-97 36.96795482833047 38.0 38.0 38.0 35.0 38.0 98-99 36.958084575137434 38.0 38.0 38.0 35.0 38.0 100 35.38896970583023 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 4.0 20 14.0 21 61.0 22 250.0 23 845.0 24 1951.0 25 4321.0 26 7808.0 27 13568.0 28 22077.0 29 33175.0 30 44074.0 31 56816.0 32 72128.0 33 96217.0 34 143038.0 35 255305.0 36 758002.0 37 4315017.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.87101228550076 19.371428875553658 14.231773777437388 25.525785061508195 2 14.350534043078525 20.003289800142923 43.048150929711944 22.598025227066607 3 17.62345032019834 26.749115958652432 30.786288186920775 24.841145534228456 4 12.311390634767182 18.68402524365754 38.42071080066153 30.583873320913746 5 13.334967760410846 37.50625571813412 35.71868694386344 13.440089577591593 6 29.457543610617666 38.046887111735586 18.636434572871156 13.859134704775599 7 26.222923148792436 32.652247654846086 23.028510966542147 18.09631822981933 8 24.491323200915556 36.18798383634028 21.148353271798527 18.172339690945634 9 25.48992037490186 16.799386609132085 21.141194069158583 36.569498946807464 10-11 24.21916190631196 26.60267850321503 28.764860710587776 20.413298879885232 12-13 25.176761056547225 23.89352119630448 28.772054249931028 22.157663497217268 14-15 22.499699983054835 25.153909980495037 26.352054905762056 25.994335130688068 16-17 21.941822980216394 28.502348029614033 27.026204570180873 22.5296244199887 18-19 21.965438047917214 27.260913105650086 29.065890588498476 21.707758257934227 20-21 22.764129725646395 26.439609586924423 28.78969371287299 22.006566974556193 22-23 22.59077203650652 26.698867225832608 28.592767631020877 22.11759310664 24-25 22.53477522789632 26.933443088615284 28.715953347480294 21.815828336008103 26-27 22.449323581699133 27.082483259557232 28.736117178977793 21.73207597976584 28-29 22.031350570079475 27.031347563580372 28.837609276578764 22.099692589761393 30-31 22.918359530918174 26.725199570960484 28.637312851976038 21.719128046145308 32-33 21.981022272504163 27.22184614157192 28.686355027198857 22.11077655872506 34-35 22.259765408693 27.22812759757375 28.855933279577073 21.656173714156182 36-37 22.05249987294529 27.168832551954104 28.794144139534346 21.984523435566263 38-39 22.14155231183416 26.6171707038409 29.11106615232183 22.130210832003108 40-41 22.19688766401604 26.361160643827038 29.36720683114388 22.07474486101305 42-43 22.514188484985965 26.349879306677774 29.01606311161932 22.119869096716936 44-45 22.195310753020653 27.001027480191315 28.70583859110033 22.0978231756877 46-47 22.634039564385088 26.5091515515003 28.18405483504848 22.672754049066132 48-49 22.58143336756935 26.41080914375211 28.18941317380069 22.81834431487784 50-51 22.085976233265452 26.734088401765703 28.492315251383154 22.687620113585684 52-53 22.24036412018243 26.871125415169566 28.545942228615267 22.342568236032736 54-55 22.299477969395507 26.826708850205115 28.116921440146747 22.756891740252627 56-57 22.71337782528534 27.04808034428105 27.83670044434281 22.401841386090798 58-59 22.17937981045942 27.439560392632657 28.423248780436882 21.95781101647104 60-61 22.535598207502343 28.08719686391431 27.418313865581062 21.95889106300228 62-63 22.141615282400505 28.37707616727565 27.45416010549932 22.02714844482453 64-65 22.008936519438656 28.233304884105188 27.491734627265657 22.266023969190503 66-67 22.219097703811386 28.058717292817192 27.40020199879875 22.32198300457267 68-69 22.29319624056548 27.805158964317943 27.678229984428214 22.223414810688364 70-71 22.431432223507215 27.237760464219775 27.818167062308518 22.512640249964495 72-73 22.46391352527631 27.02006679700446 27.87202254859637 22.64399712912286 74-75 22.282315226062536 27.175240582084285 27.983541877161795 22.558902314691384 76-77 22.571266152401805 27.10696536053173 27.711511558873287 22.610256928193177 78-79 22.523479371736556 27.14888320970813 27.666796313994073 22.660841104561243 80-81 22.40688819281683 27.261024445701445 27.67400763560413 22.658079725877602 82-83 22.805453221363578 27.09491865630649 27.77584926581604 22.323778856513897 84-85 22.798252223579624 27.059151062786764 27.549570992255713 22.593025721377902 86-87 22.477392770696536 27.229793372152027 27.763094104109083 22.529719753042357 88-89 22.720734887787593 27.012382947057596 27.700376733961026 22.566505431193786 90-91 22.747957283519426 27.044878280198013 27.60667418659385 22.600490249688708 92-93 22.794699371624162 27.184478598484763 27.552441474731733 22.468380555159346 94-95 22.517076301076504 27.25168036973876 27.578769995915586 22.652473333269146 96-97 22.642735984048308 27.319017923839162 27.62910193317576 22.409144158936776 98-99 23.79824501897642 29.184503550205015 27.81112939924747 19.206122031571095 100 22.77510121299141 30.067615592128032 21.53915497638296 25.6181282184976 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1071.0 1 1070.5 2 1533.0 3 2133.5 4 2897.0 5 4322.5 6 5392.0 7 6418.5 8 7629.0 9 8167.0 10 7978.0 11 8036.0 12 9153.5 13 11794.5 14 16869.5 15 22565.0 16 26736.5 17 29005.0 18 28418.5 19 25585.0 20 22212.5 21 19258.0 22 18496.5 23 20824.5 24 25339.5 25 31921.0 26 41459.5 27 52468.5 28 62207.5 29 72765.5 30 83406.0 31 94580.5 32 108907.5 33 122714.0 34 135522.0 35 149726.0 36 169066.0 37 186642.0 38 194009.0 39 198256.5 40 205315.5 41 210147.5 42 215854.5 43 235837.5 44 261377.5 45 273230.0 46 265350.5 47 255652.5 48 254002.0 49 252850.0 50 253057.0 51 250983.0 52 239836.5 53 225548.5 54 212660.5 55 196431.5 56 178680.0 57 161487.0 58 143977.0 59 125282.0 60 102755.5 61 80298.5 62 61872.5 63 46251.0 64 34351.0 65 24983.5 66 17864.0 67 13183.5 68 9950.5 69 7441.5 70 5506.5 71 3931.5 72 2757.0 73 1967.0 74 1341.0 75 848.0 76 526.0 77 317.5 78 200.5 79 129.5 80 84.5 81 56.5 82 36.5 83 21.5 84 12.5 85 7.0 86 5.5 87 5.0 88 2.5 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.01045552615761474 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 4.292138390559699E-5 22-23 1.7169355344790273E-5 24-25 4.979485806276196E-4 26-27 0.002781982234467523 28-29 0.006914469812197847 30-31 0.007170781181806645 32-33 0.002446833706719583 34-35 6.997364412458522E-4 36-37 5.2036031135585776E-5 38-39 5.583466587707143E-4 40-41 1.7565627159199827E-4 42-43 2.5646436109333056E-4 44-45 1.9615168231273535E-4 46-47 5.400762209570636E-5 48-49 8.995847189815465E-4 50-51 4.583373628826487E-4 52-53 0.0 54-55 0.007787696947921453 56-57 0.06224595119406228 58-59 0.07500833294217105 60-61 0.04532047220964916 62-63 0.009413172759167164 64-65 4.8803546885616294E-5 66-67 0.0 68-69 5.701718497955284E-4 70-71 0.0031041704834775963 72-73 0.013115111872213104 74-75 0.011878029898727833 76-77 0.01720132634099943 78-79 0.007625315367325673 80-81 0.00821346241245818 82-83 0.0412110603235714 84-85 0.0265937205481399 86-87 0.009819350548598027 88-89 0.0025431640478612272 90-91 1.1333155327240327E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 39.0 20-21 204.0 22-23 443.0 24-25 559.0 26-27 1533.0 28-29 3919.0 30-31 11304.0 32-33 14426.0 34-35 19661.0 36-37 31655.0 38-39 38596.0 40-41 38402.0 42-43 43392.0 44-45 52014.0 46-47 53265.0 48-49 49449.0 50-51 44616.0 52-53 42340.0 54-55 46143.0 56-57 48083.0 58-59 47924.0 60-61 50284.0 62-63 50697.0 64-65 56932.0 66-67 64019.0 68-69 64134.0 70-71 80145.0 72-73 51402.0 74-75 48289.0 76-77 50107.0 78-79 50885.0 80-81 50969.0 82-83 47808.0 84-85 47490.0 86-87 48200.0 88-89 50528.0 90-91 51688.0 92-93 49529.0 94-95 58186.0 96-97 175560.0 98-99 382571.0 100-101 3707281.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 81.27877818380385 #Duplication Level Percentage of deduplicated Percentage of total 1 88.26653462641345 71.741960889533 2 7.575796662498158 12.315029929935784 3 2.1245085783844107 5.1803238447628495 4 0.8531711449602726 2.773788329761918 5 0.4291131352585056 1.7438895668216345 6 0.23030031621167177 1.1231116990217012 7 0.14680391238357263 0.8352429841797283 8 0.0916456884318392 0.5959079665242766 9 0.06170002237601648 0.451341218937238 >10 0.2150500629895993 2.713661828280631 >50 0.00372969810224856 0.19566087369992397 >100 0.00148685027706799 0.22439405437124882 >500 1.1947628502598162E-4 0.06438317724291567 >1k 3.982542816161453E-5 0.04130363692710799 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10-11 0.0 1.7168351654539803E-5 0.0 1.7168351654539803E-5 0.0 12-13 0.0 4.292087913634951E-5 0.0 3.4336703309079606E-5 0.0 14-15 0.0 6.867340661815921E-5 0.0 3.4336703309079606E-5 0.0 16-17 0.0 6.867340661815921E-5 0.0 3.4336703309079606E-5 0.0 18-19 0.0 6.867340661815921E-5 0.0 5.1505054963619406E-5 0.0 20-21 0.0 6.867340661815921E-5 0.0 6.008923079088931E-5 0.0 22-23 0.0 6.867340661815921E-5 0.0 6.867340661815921E-5 0.0 24-25 0.0 7.725758244542911E-5 0.0 1.201784615817786E-4 0.0 26-27 0.0 8.5841758272699E-5 0.0 1.459309890635883E-4 0.0 28-29 0.0 8.5841758272699E-5 0.0 4.2920879136349507E-4 0.0 30-31 0.0 8.5841758272699E-5 1.7168351654539803E-5 0.0018284294512084889 0.0 32-33 0.0 8.5841758272699E-5 1.7168351654539803E-5 0.004755633408307525 0.0 34-35 0.0 1.0301010992723881E-4 1.7168351654539803E-5 0.007622748134615671 0.0 36-37 0.0 1.459309890635883E-4 1.7168351654539803E-5 0.012644490993568564 0.0 38-39 0.0 1.974360440272077E-4 1.7168351654539803E-5 0.020816626381129508 0.0 40-41 0.0 2.2318857150901742E-4 1.7168351654539803E-5 0.029709832538181127 0.0 42-43 0.0 2.403569231635572E-4 1.7168351654539803E-5 0.03817382990386925 0.0 44-45 0.0 2.403569231635572E-4 1.7168351654539803E-5 0.04752199737976617 0.0 46-47 0.0 2.5752527481809703E-4 1.7168351654539803E-5 0.057187779361272076 0.0 48-49 0.0 2.7469362647263685E-4 1.7168351654539803E-5 0.06700807650766885 0.0 50-51 0.0 2.7469362647263685E-4 1.7168351654539803E-5 0.0765193433242839 0.0 52-53 0.0 2.7469362647263685E-4 1.7168351654539803E-5 0.08594476838262624 0.0 54-55 0.0 2.7469362647263685E-4 1.7168351654539803E-5 0.0948293903638506 0.0 56-57 0.0 2.832778022999067E-4 1.7168351654539803E-5 0.10094990772869403 0.0 58-59 0.0 2.918619781271766E-4 1.7168351654539803E-5 0.1074910497090737 0.0 60-61 0.0 2.918619781271766E-4 1.7168351654539803E-5 0.11325961586499907 0.0 62-63 0.0 2.918619781271766E-4 1.7168351654539803E-5 0.11899384531761537 0.0 64-65 0.0 2.918619781271766E-4 1.7168351654539803E-5 0.12453063872620446 0.0 66-67 0.0 2.918619781271766E-4 1.7168351654539803E-5 0.1303850466404025 0.0 68-69 0.0 2.918619781271766E-4 1.7168351654539803E-5 0.1363252963128733 0.0 70-71 0.0 2.918619781271766E-4 1.7168351654539803E-5 0.14197368400721688 0.0 72-73 0.0 2.918619781271766E-4 1.7168351654539803E-5 0.1461370092834428 0.0 74-75 0.0 2.918619781271766E-4 1.7168351654539803E-5 0.14943333280111443 0.0 76-77 0.0 3.0903032978171643E-4 1.7168351654539803E-5 0.15228327917576803 0.0 78-79 0.0 3.0903032978171643E-4 1.7168351654539803E-5 0.15442073895675823 0.0 80-81 0.0 3.0903032978171643E-4 1.7168351654539803E-5 0.15510747302293984 0.0 82-83 0.0 3.0903032978171643E-4 1.7168351654539803E-5 0.15559677104509423 0.0 84-85 0.0 3.0903032978171643E-4 1.7168351654539803E-5 0.15575128620998507 0.0 86-87 0.0 3.0903032978171643E-4 1.7168351654539803E-5 0.15587146467156685 0.0 88 0.0 3.0903032978171643E-4 1.7168351654539803E-5 0.15587146467156685 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7675 0.0 52.57404 1 CTTATAC 7525 0.0 46.835136 1 TATACAC 9100 0.0 40.765324 3 GTATCAA 15210 0.0 40.431713 1 TTATACA 9955 0.0 36.46272 2 ATCAACG 18750 0.0 32.3894 3 TCAACGC 19215 0.0 31.759325 4 CAACGCA 19170 0.0 31.701788 5 TATCAAC 19685 0.0 31.176031 2 AACGCAG 20745 0.0 29.437332 6 ATACACA 13030 0.0 28.95586 4 TACACAT 12720 0.0 28.566656 5 ACGCAGA 22395 0.0 27.17425 7 ACACATC 13575 0.0 26.145657 6 CGCAGAG 23735 0.0 25.675644 8 ACATCTC 14050 0.0 25.111538 8 CACATCT 14670 0.0 24.13655 7 GTGGTAT 3825 0.0 23.393557 1 GCAGAGT 27070 0.0 22.528015 9 CATCTCC 16055 0.0 22.001814 9 >>END_MODULE