##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139402_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6318528 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.899549230453676 32.0 25.0 33.0 18.0 34.0 2 32.168389694561775 33.0 32.0 33.0 32.0 34.0 3 32.700766064501096 33.0 33.0 34.0 31.0 34.0 4 32.9855820849413 33.0 33.0 34.0 33.0 34.0 5 33.25515246589079 34.0 33.0 34.0 33.0 34.0 6 36.937120639490715 38.0 38.0 38.0 35.0 38.0 7 37.07698042961905 38.0 38.0 38.0 36.0 38.0 8 37.01460767444569 38.0 38.0 38.0 35.0 38.0 9 37.24306594827149 38.0 38.0 38.0 36.0 38.0 10-11 37.342477156071794 38.0 38.0 38.0 37.0 38.0 12-13 37.43358437281594 38.0 38.0 38.0 37.0 38.0 14-15 37.412471781402246 38.0 38.0 38.0 37.0 38.0 16-17 37.43000292156654 38.0 38.0 38.0 37.0 38.0 18-19 37.44679203763915 38.0 38.0 38.0 37.0 38.0 20-21 37.46091168222391 38.0 38.0 38.0 37.0 38.0 22-23 37.47011319773097 38.0 38.0 38.0 37.0 38.0 24-25 37.486056113135675 38.0 38.0 38.0 37.0 38.0 26-27 37.45217690178386 38.0 38.0 38.0 37.0 38.0 28-29 37.428471587621004 38.0 38.0 38.0 37.0 38.0 30-31 37.438744371514346 38.0 38.0 38.0 37.0 38.0 32-33 37.417338003455015 38.0 38.0 38.0 37.0 38.0 34-35 37.38984563731901 38.0 38.0 38.0 37.0 38.0 36-37 37.36351092573922 38.0 38.0 38.0 37.0 38.0 38-39 37.34139755066123 38.0 38.0 38.0 37.0 38.0 40-41 37.357809748210514 38.0 38.0 38.0 37.0 38.0 42-43 37.32587302635083 38.0 38.0 38.0 37.0 38.0 44-45 37.29350043230354 38.0 38.0 38.0 37.0 38.0 46-47 37.26088453261987 38.0 38.0 38.0 37.0 38.0 48-49 37.20857309459991 38.0 38.0 38.0 37.0 38.0 50-51 37.14299291366542 38.0 38.0 38.0 37.0 38.0 52-53 37.140607784873765 38.0 38.0 38.0 37.0 38.0 54-55 37.083819741692025 38.0 38.0 38.0 36.5 38.0 56-57 37.06252227072537 38.0 38.0 38.0 36.0 38.0 58-59 37.068890746999934 38.0 38.0 38.0 36.0 38.0 60-61 37.07937209351458 38.0 38.0 38.0 36.0 38.0 62-63 37.086889976067795 38.0 38.0 38.0 36.0 38.0 64-65 37.09515038205255 38.0 38.0 38.0 36.0 38.0 66-67 37.09559530424531 38.0 38.0 38.0 36.0 38.0 68-69 37.09213950865001 38.0 38.0 38.0 36.0 38.0 70-71 37.086245127159465 38.0 38.0 38.0 36.0 38.0 72-73 37.09064021314133 38.0 38.0 38.0 36.0 38.0 74-75 37.0849922128389 38.0 38.0 38.0 36.0 38.0 76-77 37.08241773786058 38.0 38.0 38.0 36.0 38.0 78-79 37.06128467958018 38.0 38.0 38.0 36.0 38.0 80-81 37.060174917229105 38.0 38.0 38.0 36.0 38.0 82-83 37.009896520296365 38.0 38.0 38.0 36.0 38.0 84-85 36.99239244498506 38.0 38.0 38.0 36.0 38.0 86-87 36.989947352719525 38.0 38.0 38.0 36.0 38.0 88-89 36.97073251544072 38.0 38.0 38.0 36.0 38.0 90-91 36.97260791364549 38.0 38.0 38.0 36.0 38.0 92-93 36.9752042699352 38.0 38.0 38.0 36.0 38.0 94-95 36.984047252511374 38.0 38.0 38.0 36.0 38.0 96-97 36.99844930395152 38.0 38.0 38.0 35.5 38.0 98-99 36.98804586969351 38.0 38.0 38.0 35.0 38.0 100 35.491970142817856 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 3.0 20 7.0 21 62.0 22 289.0 23 890.0 24 2352.0 25 4991.0 26 9064.0 27 15262.0 28 24502.0 29 36867.0 30 49573.0 31 62169.0 32 79649.0 33 105922.0 34 153418.0 35 266977.0 36 774943.0 37 4731586.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.619915271404984 19.14578838615576 14.026668869711425 25.207627472727822 2 14.661418915614268 20.06886486149391 42.422008265112936 22.84770795777888 3 18.088089504390897 26.20284344708135 30.622068937575335 25.086998110952425 4 12.43512729547135 18.378077932075318 38.24642385061837 30.94037092183496 5 13.698586126388932 37.29816501564922 35.11433359162134 13.888915266340515 6 29.925466817587893 37.46665362565459 18.625572285190476 13.982307271567048 7 26.4555763620894 32.78273040809505 22.63160027145563 18.130092958359924 8 24.886365938395777 35.567967729192624 21.031085088172436 18.514581244239164 9 25.835669320449316 16.472808223687544 21.007329555238183 36.68419290062496 10-11 24.580060419135595 26.313454652729245 28.336006424281095 20.77047850385406 12-13 25.65567486604475 23.86088975153707 28.33728045519463 22.146154927223556 14-15 22.858259075531517 25.01794721808624 26.393647381162193 25.730146325220048 16-17 22.15066547145158 28.071902189877136 27.040768039644675 22.73666429902661 18-19 21.934491704396976 27.016086658158358 29.106320332837015 21.943101304607655 20-21 23.006729541134558 26.168141985088024 28.79693625453239 22.02819221924503 22-23 22.699348099199714 26.328245407512192 28.67629118895231 22.296115304335785 24-25 22.53160489469256 26.43331056572623 28.933494579700213 22.101589959880997 26-27 22.44005375682281 26.572714398948804 28.8585034581197 22.12872838610869 28-29 21.913553576137062 26.662476162082864 28.950900365763566 22.473069896016504 30-31 22.580712951185237 26.211693465248548 29.032118647562434 22.17547493600378 32-33 22.208477367478586 26.65598362360882 28.74387493033619 22.391664078576408 34-35 22.392990683754572 26.682158789152037 29.114385338398176 21.810465188695215 36-37 22.645590564917295 26.34482816069039 28.83889743337954 22.170683841012774 38-39 22.288525888857997 26.337988280809004 29.03310868217484 22.340377148158158 40-41 22.485861622816923 26.15255277292894 29.09329622683024 22.2682893774239 42-43 22.66351835750703 26.116978635408945 28.761250410388207 22.458252596695814 44-45 22.431338727401577 26.65238121536182 28.48391617688055 22.43236388035605 46-47 22.878522089126797 26.28176646149042 27.93187727404786 22.90783417533492 48-49 22.754561735486924 26.324254916537136 28.078056362776238 22.843126985199703 50-51 22.452784500326448 26.576583187230952 28.122953301049176 22.847679011393428 52-53 22.615736830077566 26.73745813724766 27.98179815191674 22.66500688075804 54-55 22.56070314443044 26.68418236135827 27.763696976048617 22.99141751816267 56-57 22.948648554665997 26.96654254723148 27.25202837102637 22.83278052707615 58-59 22.571423932747543 27.272401435917654 27.85951016871757 22.29666446261723 60-61 22.852093398691128 27.53457860259836 27.35091780643728 22.26241019227323 62-63 22.59727913046976 27.61137739762042 27.29034784181096 22.500995630098867 64-65 22.477940302732303 27.625682096111127 27.30010324705488 22.596274354101695 66-67 22.554619727955693 27.56674920989748 27.181064666852457 22.69756639529437 68-69 22.584095058750812 27.2619576581838 27.513421628924384 22.640525654141 70-71 22.792980164977735 26.784181098569725 27.448451596567946 22.974387139884595 72-73 22.760390223969186 26.716296622589415 27.660803625621515 22.86250952781988 74-75 22.73021936254945 26.88277278246389 27.57240438559104 22.814603469395625 76-77 22.7953262753065 26.811883124290443 27.3843506962637 23.00843990413936 78-79 22.72677709063328 26.79519068368118 27.350095652419864 23.127936573265675 80-81 22.76312965815988 26.81006722552528 27.461682219540112 22.965120896774728 82-83 23.0313998564441 26.75998107364938 27.603943064833402 22.604676005073117 84-85 23.159369932967756 26.79343535433239 27.256936348074372 22.79025836462548 86-87 22.70530995642656 26.99402208950096 27.407763680032705 22.892904274039775 88-89 22.967371003072092 26.821916249141097 27.229115157218654 22.981597590568153 90-91 22.957545151249114 26.827718283780932 27.26846248877598 22.946274076193973 92-93 23.136757887690806 26.799954503519658 27.329896983592068 22.733390625197465 94-95 22.72750352279257 26.920691855930535 27.40682950434535 22.944975116931545 96-97 22.877598846231756 27.079568507573544 27.40118691088259 22.64164573531211 98-99 23.91815923172575 28.940257296087275 27.555122177406982 19.586461294779998 100 30.9808624561764 40.066749203374016 28.95238834044959 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1262.0 1 1321.5 2 1812.0 3 2454.5 4 3539.5 5 5378.5 6 6628.5 7 7555.0 8 8363.5 9 8611.0 10 8491.0 11 8642.0 12 10076.0 13 13379.0 14 19915.0 15 27486.5 16 32903.0 17 35740.5 18 35071.5 19 31304.0 20 26653.5 21 22649.0 22 20922.5 23 21986.0 24 26055.0 25 32619.5 26 42058.0 27 52637.0 28 62350.0 29 74453.0 30 86096.0 31 97114.0 32 111098.5 33 126868.5 34 142360.5 35 157974.5 36 173531.5 37 189095.5 38 199961.5 39 205581.0 40 213671.0 41 221837.0 42 232077.5 43 253150.5 44 279059.5 45 295183.0 46 301433.0 47 305066.0 48 300987.5 49 290159.0 50 280299.0 51 273782.0 52 268024.5 53 258600.0 54 246227.5 55 231859.0 56 213405.5 57 190309.0 58 168352.5 59 142333.5 60 113745.5 61 89512.5 62 69161.0 63 52595.5 64 38298.0 65 27910.0 66 20731.0 67 15925.0 68 11872.0 69 8371.5 70 5811.0 71 3918.0 72 2895.5 73 2052.5 74 1372.0 75 854.5 76 521.5 77 315.5 78 203.0 79 137.5 80 93.0 81 65.0 82 45.5 83 31.0 84 22.5 85 16.5 86 14.5 87 9.5 88 4.0 89 2.0 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.010239726721160372 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.2661397204173576E-4 22-23 3.956907692465969E-5 24-25 4.352999790660282E-4 26-27 0.003245505983486074 28-29 0.00725470714465894 30-31 0.007913652064789181 32-33 0.00260723257444583 34-35 0.0011163644920497704 36-37 1.9223064601831861E-4 38-39 5.644739755724693E-4 40-41 1.4625045520454182E-4 42-43 1.6378649480440575E-4 44-45 1.5707964144505003E-4 46-47 5.0148967507982464E-5 48-49 9.207862771419707E-4 50-51 5.801968573807866E-4 52-53 0.0 54-55 0.00855029266504802 56-57 0.06536845333711264 58-59 0.07751483743381563 60-61 0.04855638176373194 62-63 0.0105893388275908 64-65 7.323779341119853E-5 66-67 1.8529605399082304E-5 68-69 6.289845466945923E-4 70-71 0.0036360029780958423 72-73 0.014317439945194037 74-75 0.012418798194236446 76-77 0.01824831393182734 78-79 0.0074253665712595346 80-81 0.008579136208456822 82-83 0.04472468363276243 84-85 0.029361121068521026 86-87 0.010539074168026609 88-89 0.002749690182109114 90-91 2.1509680593073517E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 53.0 20-21 301.0 22-23 549.0 24-25 881.0 26-27 2595.0 28-29 5146.0 30-31 14601.0 32-33 18581.0 34-35 24551.0 36-37 38813.0 38-39 47227.0 40-41 47018.0 42-43 54643.0 44-45 64848.0 46-47 64577.0 48-49 60065.0 50-51 54569.0 52-53 51503.0 54-55 56064.0 56-57 57457.0 58-59 58195.0 60-61 61872.0 62-63 57891.0 64-65 63161.0 66-67 69797.0 68-69 68963.0 70-71 80654.0 72-73 58766.0 74-75 56964.0 76-77 59672.0 78-79 61414.0 80-81 59674.0 82-83 56988.0 84-85 57991.0 86-87 58123.0 88-89 59863.0 90-91 60551.0 92-93 58783.0 94-95 66910.0 96-97 191369.0 98-99 1425128.0 100-101 2861757.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.70612735750503 #Duplication Level Percentage of deduplicated Percentage of total 1 87.05165758525466 69.38550506172227 2 8.055201736560441 12.840978710093642 3 2.4790700103978502 5.927912099308272 4 1.0461857563285972 3.335496605341396 5 0.5128924162111828 2.04403341236135 6 0.2776796806604103 1.3279663194785996 7 0.1710391799914722 0.9543009464466456 8 0.1111515599256357 0.7087568313134457 9 0.07293168945147742 0.5231792275035719 >10 0.21776506196106007 2.5126262064400167 >50 0.00274646085666238 0.14690273341152194 >100 0.0016411393509335461 0.26269521076546987 >500 3.7723049605024E-5 0.029646635813856816 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 3.1652941951036696E-5 1.5826470975518348E-5 0.0 0.0 0.0 3 3.1652941951036696E-5 3.1652941951036696E-5 0.0 0.0 0.0 4 3.1652941951036696E-5 3.1652941951036696E-5 0.0 4.747941292655505E-5 0.0 5 7.913235487759174E-5 3.1652941951036696E-5 0.0 4.747941292655505E-5 0.0 6 1.7409118073070183E-4 3.1652941951036696E-5 0.0 4.747941292655505E-5 0.0 7 2.5322353560829357E-4 3.1652941951036696E-5 0.0 4.747941292655505E-5 0.0 8 2.848764775593303E-4 3.1652941951036696E-5 0.0 4.747941292655505E-5 0.0 9 2.848764775593303E-4 3.1652941951036696E-5 0.0 9.49588258531101E-5 0.0 10-11 3.007029485348486E-4 3.956617743879587E-5 0.0 9.49588258531101E-5 0.0 12-13 3.8774853890019957E-4 4.747941292655505E-5 0.0 1.0287206134086926E-4 0.0 14-15 5.855794260941788E-4 4.747941292655505E-5 0.0 1.1869853231638762E-4 0.0 16-17 5.93492661581938E-4 4.747941292655505E-5 0.0 1.4243823877966514E-4 0.0 18-19 7.121911938983257E-4 6.330588390207339E-5 0.0 2.0574412268173852E-4 0.0 20-21 8.071500197514358E-4 7.913235487759174E-5 0.0 2.4531030012053443E-4 0.0 22-23 8.783691391412683E-4 8.704559036535092E-5 0.0 3.4026912597364447E-4 0.0 24-25 0.0011711588521883577 1.1078529682862844E-4 0.0 3.956617743879587E-4 0.0 26-27 0.0011948985586516352 1.1078529682862844E-4 0.0 4.668808937777913E-4 0.0 28-29 0.001448122094259929 1.1869853231638762E-4 0.0 9.654147295066193E-4 0.0 30-31 0.0015272544491375206 1.2661176780414678E-4 0.0 0.0021603132881582547 0.0 32-33 0.0015668206265763165 1.2661176780414678E-4 0.0 0.00489037953143517 0.0 34-35 0.0018042176912090918 1.4243823877966514E-4 0.0 0.008356376675073687 0.0 36-37 0.0020495279913296262 1.4243823877966514E-4 0.0 0.012993532670900563 0.0 38-39 0.0022157059365725687 1.4243823877966514E-4 0.0 0.02020249020024917 0.0 40-41 0.0022236191720603283 1.4243823877966514E-4 0.0 0.027933721271789884 0.0 42-43 0.00239771035279103 1.503514742674243E-4 0.0 0.0352376376269916 0.0 44-45 0.0026430206529115645 1.5826470975518347E-4 0.0 0.043443662827797866 0.0 46-47 0.003038682427299523 1.5826470975518347E-4 0.0 0.05202161009652881 0.0 48-49 0.0031969471370547065 1.7409118073070183E-4 0.0 0.060710342662088385 0.0 50-51 0.0031969471370547065 1.9783088719397936E-4 0.0 0.06887680168545585 0.0 52-53 0.0032048603725424655 2.2157059365725688E-4 0.0 0.07690873570553142 0.0 54-55 0.00326025302095678 2.2157059365725688E-4 0.0 0.08536007120645822 0.0 56-57 0.00335521184680989 2.4531030012053443E-4 0.0 0.09310712874897445 0.0 58-59 0.00335521184680989 2.611367710960527E-4 0.0 0.10042687157515168 0.0 60-61 0.0033947780242486857 2.848764775593303E-4 0.0 0.10788905264010859 0.0 62-63 0.0034343442016874816 2.848764775593303E-4 0.0 0.11476565427897131 0.0 64-65 0.003505563321077314 2.848764775593303E-4 0.0 0.12172930150819938 0.0 66-67 0.003798353034124404 2.848764775593303E-4 0.0 0.12823398107913742 0.0 68-69 0.003909138330953032 3.007029485348486E-4 0.0 0.13458039594032029 0.0 70-71 0.004035750098757179 3.4818236146140366E-4 0.0 0.140175053430166 0.0 72-73 0.004178188337536844 4.1148824536347704E-4 0.0 0.14476473001306633 0.0 74-75 0.004296886869853232 4.1148824536347704E-4 0.0 0.1481990742147538 0.0 76-77 0.004352279518267546 4.273147163389954E-4 0.0 0.15175211694875768 0.0 78-79 0.0043760192247308234 4.4314118731451376E-4 0.0 0.15424478612740183 0.0 80-81 0.004929945708873965 4.4314118731451376E-4 0.0 0.1551389817375186 0.0 82-83 0.005016991299239317 4.4314118731451376E-4 0.0 0.1556058626312964 0.0 84-85 0.005135689831555703 4.4314118731451376E-4 0.0 0.15586699940239246 0.0 86-87 0.005230648657408814 4.4314118731451376E-4 0.0 0.15601735087665988 0.0 88 0.005254388363872092 4.4314118731451376E-4 0.0 0.15601735087665988 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 6070 0.0 40.260418 1 GGTATCA 13955 0.0 35.711445 1 TATACAC 7385 0.0 35.23346 3 GTATCAA 22685 0.0 31.123432 1 TTATACA 8600 0.0 29.822634 2 ATCAACG 26720 0.0 25.874342 3 CTCGATA 1300 0.0 25.669012 94 CAACGCA 27125 0.0 25.51876 5 TCAACGC 27585 0.0 25.0781 4 TATCAAC 28405 0.0 24.82665 2 AACGCAG 28295 0.0 24.69935 6 ACACATC 10660 0.0 23.470118 6 TACACAT 11410 0.0 23.243027 5 ACATCTC 11195 0.0 22.162264 8 ACGCAGA 31345 0.0 22.149666 7 CGCAGAG 31295 0.0 22.145082 8 ATACACA 12510 0.0 21.632593 4 CACATCT 11750 0.0 21.47033 7 GAGTACT 18195 0.0 20.316454 12-13 GCAGAGT 35265 0.0 19.640247 9 >>END_MODULE