##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139399_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4120950 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.6777429961538 25.0 18.0 32.0 18.0 33.0 2 27.83760783314527 30.0 25.0 32.0 18.0 33.0 3 30.018577512466784 31.0 29.0 33.0 25.0 33.0 4 30.508391511665998 31.0 30.0 33.0 28.0 33.0 5 31.93700287555054 33.0 32.0 33.0 31.0 33.0 6 36.59945036945364 38.0 37.0 38.0 34.0 38.0 7 36.672912556570694 38.0 37.0 38.0 34.0 38.0 8 37.16904912702168 38.0 38.0 38.0 36.0 38.0 9 37.31133185309213 38.0 38.0 38.0 36.0 38.0 10-11 37.33495092151082 38.0 38.0 38.0 37.0 38.0 12-13 37.41422014341353 38.0 38.0 38.0 37.0 38.0 14-15 37.42917688882417 38.0 38.0 38.0 37.0 38.0 16-17 37.463625620306004 38.0 38.0 38.0 37.0 38.0 18-19 37.473231900411314 38.0 38.0 38.0 37.0 38.0 20-21 37.48327902728995 38.0 38.0 38.0 37.0 38.0 22-23 37.4922897766633 38.0 38.0 38.0 37.0 38.0 24-25 37.50995136719908 38.0 38.0 38.0 37.0 38.0 26-27 37.47790861260259 38.0 38.0 38.0 37.0 38.0 28-29 37.45889674953693 38.0 38.0 38.0 37.0 38.0 30-31 37.46685003768046 38.0 38.0 38.0 37.0 38.0 32-33 37.447758055141335 38.0 38.0 38.0 37.0 38.0 34-35 37.431591742593966 38.0 38.0 38.0 37.0 38.0 36-37 37.410513661717125 38.0 38.0 38.0 37.0 38.0 38-39 37.40914848511956 38.0 38.0 38.0 37.0 38.0 40-41 37.398851815106035 38.0 38.0 38.0 37.0 38.0 42-43 37.370728561012385 38.0 38.0 38.0 37.0 38.0 44-45 37.346772338297384 38.0 38.0 38.0 37.0 38.0 46-47 37.32913293992097 38.0 38.0 38.0 37.0 38.0 48-49 37.288063477486816 38.0 38.0 38.0 37.0 38.0 50-51 37.2129667687088 38.0 38.0 38.0 37.0 38.0 52-53 37.202946390802595 38.0 38.0 38.0 37.0 38.0 54-55 37.135539911690785 38.0 38.0 38.0 36.5 38.0 56-57 37.11404094939877 38.0 38.0 38.0 36.0 38.0 58-59 37.125186814408906 38.0 38.0 38.0 36.0 38.0 60-61 37.135419507436126 38.0 38.0 38.0 36.0 38.0 62-63 37.138558212165314 38.0 38.0 38.0 36.0 38.0 64-65 37.14413203592524 38.0 38.0 38.0 36.0 38.0 66-67 37.13543295286297 38.0 38.0 38.0 36.0 38.0 68-69 37.12479561192882 38.0 38.0 38.0 36.0 38.0 70-71 37.11432645196069 38.0 38.0 38.0 36.0 38.0 72-73 37.114211021009595 38.0 38.0 38.0 36.0 38.0 74-75 37.096589826155245 38.0 38.0 38.0 36.0 38.0 76-77 37.083363729806464 38.0 38.0 38.0 36.0 38.0 78-79 37.059305215907855 38.0 38.0 38.0 36.0 38.0 80-81 37.053553318636006 38.0 38.0 38.0 36.0 38.0 82-83 36.99506647080456 38.0 38.0 38.0 36.0 38.0 84-85 36.97071484187512 38.0 38.0 38.0 36.0 38.0 86-87 36.96115909560527 38.0 38.0 38.0 36.0 38.0 88-89 36.93585954104025 38.0 38.0 38.0 35.0 38.0 90-91 36.931164053695554 38.0 38.0 38.0 35.0 38.0 92-93 36.929221973334535 38.0 38.0 38.0 35.0 38.0 94-95 36.937074983787355 38.0 38.0 38.0 35.0 38.0 96-97 36.93583916726793 38.0 38.0 38.0 35.0 38.0 98-99 36.917781893216436 38.0 38.0 38.0 35.0 38.0 100 35.265658408144716 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 3.0 20 7.0 21 55.0 22 204.0 23 667.0 24 1547.0 25 3082.0 26 5688.0 27 9131.0 28 14546.0 29 21462.0 30 29017.0 31 38071.0 32 50376.0 33 70460.0 34 111255.0 35 224376.0 36 797823.0 37 2743178.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.69274075152574 22.408522306749656 14.284910032880768 23.613826908843834 2 14.328108277333257 21.167713862051727 41.07740994483719 23.426767915777823 3 18.02149989686844 26.059549375750734 31.27776362246569 24.64118710491513 4 13.029325762263555 18.455428966621774 39.242626093497854 29.27261917761681 5 13.581819726034045 37.70392749244713 35.37385796964293 13.340394811875903 6 29.795969375993398 38.86516458583579 18.57571676433832 12.763149273832491 7 26.422839393829094 33.39227605285189 23.20879894199153 16.976085611327484 8 24.160205777793955 37.69409966148582 20.957837391863528 17.187857168856695 9 25.736662662735533 17.640398451813297 21.411422123539474 35.211516761911696 10-11 24.20244118467829 27.421347019497933 28.834394981739646 19.541816814084132 12-13 25.026802072337688 24.89226998628957 28.98139991992138 21.099528021451363 14-15 22.231961076936145 26.37394290151543 26.571846297577018 24.822249723971414 16-17 21.73651706523981 29.433516543515452 27.312864752059596 21.51710163918514 18-19 21.76088037952414 28.637110375034887 28.90845557456412 20.69355367087686 20-21 22.659759557569036 27.802853271535948 28.706699474383303 20.830687696511717 22-23 22.34833353638204 27.654518044073058 28.57766564527504 21.419482774269863 24-25 22.129098736904776 27.72503908528717 28.72011051036532 21.42575166744273 26-27 22.042862426174654 27.972449137752005 28.608725637286952 21.37596279878639 28-29 21.97129201010812 28.07342762461637 28.61153244462318 21.343747920652337 30-31 22.27531159183484 27.844522306872733 28.543509834692294 21.336656266600134 32-33 22.081139204215162 28.055996021501905 28.40919120712964 21.453673567153288 34-35 22.191588019241706 28.02792026803965 28.460542627268374 21.31994908545027 36-37 22.206876588245567 27.879799236821718 28.489340226582865 21.423983948349854 38-39 22.022586011542266 28.132995160667917 28.525348486685527 21.319070341104286 40-41 22.30004507843412 27.973440247179877 28.416548502401813 21.309966171984193 42-43 22.229075121406126 28.05534856395712 28.225144640525652 21.4904316741111 44-45 22.239646365289335 28.120489057218684 28.13955346393372 21.50031111355827 46-47 22.274625212850278 28.12390888554312 27.91796715500557 21.683498746601032 48-49 22.221982973900246 28.191196046813623 28.0005137185271 21.58630726075904 50-51 22.20853608491441 28.349455691508417 27.828515323802872 21.613492899774304 52-53 22.363129719873754 28.252800596833357 27.77476261927846 21.609307064014434 54-55 22.368981046558574 28.216987008538197 27.745109752850123 21.668922192053106 56-57 22.389817454704808 28.289049512770823 27.718688948747456 21.602444083776913 58-59 22.32398414663451 28.33398289160065 27.754128155487717 21.587904806277127 60-61 22.381032271837295 28.339309698208343 27.777070774116595 21.502587255837767 62-63 22.366975144300664 28.418911973743676 27.68524462893358 21.528868253022083 64-65 22.31931129186335 28.44121098740017 27.671823015068703 21.56765470566778 66-67 22.5376024270022 28.656238743957623 27.375977080737186 21.430181748302992 68-69 22.418066117815176 28.378168465772635 27.592906417550445 21.610858998861744 70-71 22.418653599317476 28.136729566821263 27.674124302256725 21.770492531604532 72-73 22.44157437094531 28.279108312946654 27.618002736652652 21.661314579455382 74-75 22.24022531304585 28.343649867324537 27.58748237622526 21.828642443404352 76-77 22.31511629017718 28.038913236354396 27.732481622728834 21.91348885073959 78-79 22.320609597127664 28.095435002035856 27.684262355437223 21.899693045399257 80-81 22.323100572024572 28.10867943659155 27.615752274232268 21.95246771715161 82-83 22.305196783569276 27.993548344469072 27.79007305464746 21.911181817314194 84-85 22.44602928266844 27.93557735873218 27.711467288837284 21.906926069762093 86-87 22.1943231539058 28.000463249889503 27.83961259381334 21.965601002391363 88-89 22.28750410299593 27.99075911620712 27.79535676871918 21.92638001207777 90-91 22.39191758388856 27.931642043921272 27.821561672115962 21.854878700074206 92-93 22.367617017565657 27.985895612405624 27.75502077148129 21.891466598547424 94-95 22.193373984431314 28.095138738140935 27.8283571293581 21.883130148069647 96-97 22.299042923824533 28.15807009578685 27.890431060643877 21.652455919744735 98-99 23.310163778338357 30.153077068296607 28.05338459728477 18.483374556080264 100 22.356452935160743 30.984997774520078 22.054740669318953 24.60380862100023 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 891.0 1 826.5 2 729.5 3 759.0 4 992.5 5 1371.5 6 1666.0 7 1978.5 8 2424.0 9 2852.5 10 3133.0 11 3422.0 12 3990.5 13 4955.0 14 6843.0 15 9344.5 16 11402.5 17 12625.0 18 12906.0 19 12427.5 20 11744.5 21 11490.5 22 12377.5 23 14863.0 24 19009.5 25 25134.5 26 33266.0 27 42388.0 28 51121.0 29 60578.5 30 70634.5 31 80158.5 32 90262.5 33 100986.5 34 112136.0 35 122552.0 36 133501.5 37 143564.0 38 149383.0 39 154199.0 40 161846.5 41 168138.0 42 171543.5 43 175126.5 44 177155.5 45 178537.5 46 178416.5 47 177165.5 48 175048.5 49 169562.5 50 163466.5 51 157552.0 52 149628.0 53 140128.0 54 130467.0 55 120159.0 56 108951.5 57 96990.0 58 85217.5 59 73394.5 60 60986.0 61 49012.0 62 37901.5 63 28896.5 64 21684.5 65 15799.0 66 11467.0 67 8551.5 68 6375.5 69 4601.5 70 3345.5 71 2400.0 72 1681.5 73 1131.0 74 796.5 75 541.0 76 340.5 77 206.0 78 132.5 79 84.0 80 47.5 81 28.0 82 19.5 83 13.0 84 9.0 85 6.0 86 4.0 87 1.0 88 0.5 89 1.0 90 1.5 91 2.0 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.01019182470061515 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.4560334324689874E-4 22-23 0.0 24-25 4.2473934353257894E-4 26-27 0.003046441113506997 28-29 0.0072240728934451675 30-31 0.007728661754267686 32-33 0.002519976597086907 34-35 8.419792809643372E-4 36-37 1.3469418542344424E-4 38-39 6.646882753542573E-4 40-41 1.733306739455645E-4 42-43 1.2454768949713E-4 44-45 2.0067756270578072E-4 46-47 3.7924311417758664E-5 48-49 0.001223124389711893 50-51 3.080655014003503E-4 52-53 0.0 54-55 0.007808479852950708 56-57 0.06880892124446598 58-59 0.08289042739113049 60-61 0.04744370721558583 62-63 0.010106031462102517 64-65 1.352506647908301E-4 66-67 0.0 68-69 6.191360932677617E-4 70-71 0.003720696220008655 72-73 0.01336208937136832 74-75 0.01151355661251104 76-77 0.016720987305164147 78-79 0.007901006291733936 80-81 0.008763608845402528 82-83 0.041197852134494915 84-85 0.026107985413311486 86-87 0.009530428173561515 88-89 0.0022516855528681413 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 69.0 20-21 281.0 22-23 324.0 24-25 546.0 26-27 1077.0 28-29 2461.0 30-31 7005.0 32-33 8965.0 34-35 12259.0 36-37 20076.0 38-39 23525.0 40-41 23605.0 42-43 26703.0 44-45 30854.0 46-47 31322.0 48-49 29620.0 50-51 27489.0 52-53 25925.0 54-55 28267.0 56-57 29095.0 58-59 29964.0 60-61 28986.0 62-63 28219.0 64-65 30418.0 66-67 31734.0 68-69 32616.0 70-71 32157.0 72-73 30518.0 74-75 31161.0 76-77 33032.0 78-79 33860.0 80-81 33907.0 82-83 32386.0 84-85 32464.0 86-87 32937.0 88-89 34329.0 90-91 34825.0 92-93 34830.0 94-95 40111.0 96-97 125494.0 98-99 277345.0 100-101 2770189.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.53543294782122 #Duplication Level Percentage of deduplicated Percentage of total 1 92.17239665615729 82.52695440447351 2 5.939373077032053 10.635686797813959 3 1.1536867734279226 3.0988753423513193 4 0.3765375559870771 1.3485381238566967 5 0.15248016011361526 0.6826188575862819 6 0.07819855593652622 0.4200924937002774 7 0.0410396182986794 0.257214999466991 8 0.021270241800777367 0.15235522468299564 9 0.016824773048160314 0.13557720052042804 >10 0.046895829084738994 0.6139156724072692 >50 9.30412162599611E-4 0.05854241597514937 >100 3.3014214909824044E-4 0.051280940027949785 >500 3.6204801403081714E-5 0.018347527137227804 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 2.4266249287178927E-5 0.0 0.0 0.0 5 2.4266249287178927E-5 2.4266249287178927E-5 0.0 0.0 0.0 6 2.4266249287178927E-5 2.4266249287178927E-5 0.0 0.0 0.0 7 2.4266249287178927E-5 2.4266249287178927E-5 0.0 0.0 0.0 8 2.4266249287178927E-5 4.8532498574357854E-5 0.0 0.0 2.4266249287178927E-5 9 2.4266249287178927E-5 1.698637450102525E-4 0.0 0.0 2.4266249287178927E-5 10-11 2.4266249287178927E-5 1.698637450102525E-4 0.0 2.4266249287178927E-5 2.4266249287178927E-5 12-13 2.4266249287178927E-5 1.698637450102525E-4 0.0 2.4266249287178927E-5 2.4266249287178927E-5 14-15 2.4266249287178927E-5 2.911949914461471E-4 0.0 2.4266249287178927E-5 3.639937393076839E-5 16-17 2.4266249287178927E-5 2.911949914461471E-4 0.0 4.8532498574357854E-5 4.8532498574357854E-5 18-19 2.4266249287178927E-5 3.033281160897366E-4 0.0 1.4559749572307356E-4 6.066562321794732E-5 20-21 2.4266249287178927E-5 3.154612407333261E-4 0.0 2.1839624358461034E-4 7.279874786153678E-5 22-23 2.4266249287178927E-5 3.275943653769155E-4 0.0 2.669287421589682E-4 7.279874786153678E-5 24-25 2.4266249287178927E-5 3.39727490020505E-4 0.0 3.275943653769155E-4 9.706499714871571E-5 26-27 2.4266249287178927E-5 3.39727490020505E-4 0.0 4.1252623788204173E-4 1.2133124643589463E-4 28-29 2.4266249287178927E-5 3.39727490020505E-4 0.0 7.279874786153679E-4 1.2133124643589463E-4 30-31 4.8532498574357854E-5 3.6399373930768393E-4 0.0 0.001674371200815346 1.2133124643589463E-4 32-33 4.8532498574357854E-5 3.6399373930768393E-4 0.0 0.003943265509166576 1.4559749572307356E-4 34-35 4.8532498574357854E-5 4.6105873645639964E-4 0.0 0.007146410415074194 1.4559749572307356E-4 36-37 4.8532498574357854E-5 5.581237336051153E-4 0.0 0.01176913090428178 1.4559749572307356E-4 38-39 4.8532498574357854E-5 6.309224814666522E-4 0.0 0.023259199941761 1.4559749572307356E-4 40-41 4.8532498574357854E-5 7.279874786153679E-4 0.0 0.035938315194311996 1.698637450102525E-4 42-43 4.8532498574357854E-5 7.401206032589573E-4 0.0 0.044006843082298984 1.698637450102525E-4 44-45 4.8532498574357854E-5 7.765199771897257E-4 0.0 0.05355561217680389 1.698637450102525E-4 46-47 4.8532498574357854E-5 8.007862264769046E-4 0.0 0.06360183938169597 1.698637450102525E-4 48-49 4.8532498574357854E-5 8.007862264769046E-4 0.0 0.073235540348706 1.698637450102525E-4 50-51 4.8532498574357854E-5 8.857180989820309E-4 0.0 0.08328176755359808 1.698637450102525E-4 52-53 4.8532498574357854E-5 8.978512236256203E-4 0.0 0.10533978815564371 1.8199686965384196E-4 54-55 4.8532498574357854E-5 9.221174729127993E-4 0.0 0.13181426612795594 1.9412999429743141E-4 56-57 4.8532498574357854E-5 9.221174729127993E-4 0.0 0.16585981387786797 1.9412999429743141E-4 58-59 4.8532498574357854E-5 9.221174729127993E-4 0.0 0.19302587995486478 1.9412999429743141E-4 60-61 6.066562321794732E-5 9.342505975563887E-4 0.0 0.20376369526444144 1.9412999429743141E-4 62-63 7.279874786153678E-5 9.463837221999782E-4 0.0 0.21470777369295913 1.9412999429743141E-4 64-65 7.279874786153678E-5 0.0010919812179230517 0.0 0.22082286851332822 1.9412999429743141E-4 66-67 7.279874786153678E-5 0.0010919812179230517 0.0 0.2262706414782999 1.9412999429743141E-4 68-69 7.279874786153678E-5 0.00112838059185382 0.0 0.23168201506934083 1.9412999429743141E-4 70-71 7.279874786153678E-5 0.0011647799657845885 0.0 0.23626833618461762 1.9412999429743141E-4 72-73 7.279874786153678E-5 0.0011890462150717675 0.0 0.24027226731700216 2.669287421589682E-4 74-75 7.279874786153678E-5 0.001201179339715357 0.0 0.24328128222861234 2.669287421589682E-4 76-77 7.279874786153678E-5 0.0012497118382897147 0.0 0.24663002463024303 2.669287421589682E-4 78-79 7.279874786153678E-5 0.0012618449629333043 0.0 0.2485106589499994 2.669287421589682E-4 80-81 7.279874786153678E-5 0.0012739780875768937 0.0 0.24935997767505066 2.669287421589682E-4 82-83 7.279874786153678E-5 0.001286111212220483 0.0 0.24985743578543781 2.669287421589682E-4 84-85 7.279874786153678E-5 0.001286111212220483 0.0 0.25005156577973525 2.669287421589682E-4 86-87 7.279874786153678E-5 0.001286111212220483 0.0 0.25008796515366605 2.669287421589682E-4 88 7.279874786153678E-5 0.001310377461507662 0.0 0.25008796515366605 2.669287421589682E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4985 0.0 43.54914 1 GTATCAA 8670 0.0 35.253635 1 ATCAACG 9850 0.0 30.722248 3 TCAACGC 9850 0.0 30.67861 4 CAACGCA 10130 0.0 30.042797 5 TATCAAC 10435 0.0 29.084772 2 AACGCAG 10510 0.0 29.038366 6 ACGCAGA 12115 0.0 25.12039 7 CGCAGAG 12300 0.0 24.812458 8 GCAGAGT 15010 0.0 20.361298 9 GAGTACT 7940 0.0 19.056305 12-13 AGAGTAC 13060 0.0 18.151766 10-11 TACATGG 11450 0.0 18.058971 2 GTACATG 11660 0.0 17.918068 1 TATACCG 240 4.0455416E-7 17.9104 5 GTGGTAT 2790 0.0 17.873402 1 CAGAGTA 14565 0.0 17.766525 10-11 ACATGGG 11785 0.0 17.398241 3 GTACTTT 8815 0.0 17.067926 14-15 CATGGGG 8575 0.0 16.893215 4 >>END_MODULE