##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139396_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4709041 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.692102064942734 25.0 18.0 32.0 18.0 33.0 2 27.97792756529408 31.0 25.0 32.0 18.0 33.0 3 30.098996802108964 31.0 29.0 33.0 27.0 33.0 4 30.4615695637392 31.0 30.0 33.0 28.0 33.0 5 31.972190303715767 33.0 32.0 33.0 31.0 33.0 6 36.64306108186359 38.0 37.0 38.0 34.0 38.0 7 36.69299502807472 38.0 37.0 38.0 34.0 38.0 8 37.195740491535325 38.0 38.0 38.0 36.0 38.0 9 37.334932101886565 38.0 38.0 38.0 37.0 38.0 10-11 37.335811049425985 38.0 38.0 38.0 37.0 38.0 12-13 37.43007918172724 38.0 38.0 38.0 37.0 38.0 14-15 37.440191431758606 38.0 38.0 38.0 37.0 38.0 16-17 37.47618570320369 38.0 38.0 38.0 37.0 38.0 18-19 37.4846613142676 38.0 38.0 38.0 37.0 38.0 20-21 37.49210707307907 38.0 38.0 38.0 37.0 38.0 22-23 37.50040797012603 38.0 38.0 38.0 37.0 38.0 24-25 37.51745808627878 38.0 38.0 38.0 37.0 38.0 26-27 37.48196221593801 38.0 38.0 38.0 37.0 38.0 28-29 37.45808388654986 38.0 38.0 38.0 37.0 38.0 30-31 37.4675101870617 38.0 38.0 38.0 37.0 38.0 32-33 37.449222774098146 38.0 38.0 38.0 37.0 38.0 34-35 37.42787442923854 38.0 38.0 38.0 37.0 38.0 36-37 37.40510448507798 38.0 38.0 38.0 37.0 38.0 38-39 37.39996700212157 38.0 38.0 38.0 37.0 38.0 40-41 37.392212723542485 38.0 38.0 38.0 37.0 38.0 42-43 37.35881815155233 38.0 38.0 38.0 37.0 38.0 44-45 37.33038820553104 38.0 38.0 38.0 37.0 38.0 46-47 37.307609682917516 38.0 38.0 38.0 37.0 38.0 48-49 37.26003652713891 38.0 38.0 38.0 37.0 38.0 50-51 37.187492184491774 38.0 38.0 38.0 37.0 38.0 52-53 37.17986608044153 38.0 38.0 38.0 37.0 38.0 54-55 37.11944427113852 38.0 38.0 38.0 36.5 38.0 56-57 37.09730697963012 38.0 38.0 38.0 36.0 38.0 58-59 37.105175544369594 38.0 38.0 38.0 36.0 38.0 60-61 37.11755534927234 38.0 38.0 38.0 36.0 38.0 62-63 37.12475847977885 38.0 38.0 38.0 36.0 38.0 64-65 37.13042322643518 38.0 38.0 38.0 36.0 38.0 66-67 37.12820791375363 38.0 38.0 38.0 36.0 38.0 68-69 37.11869544039218 38.0 38.0 38.0 36.0 38.0 70-71 37.10980583963038 38.0 38.0 38.0 36.0 38.0 72-73 37.11173852109482 38.0 38.0 38.0 36.0 38.0 74-75 37.100626966782805 38.0 38.0 38.0 36.0 38.0 76-77 37.09417359410425 38.0 38.0 38.0 36.0 38.0 78-79 37.073065359994985 38.0 38.0 38.0 36.0 38.0 80-81 37.06681327167334 38.0 38.0 38.0 36.0 38.0 82-83 37.013405575578446 38.0 38.0 38.0 36.0 38.0 84-85 36.9938622314053 38.0 38.0 38.0 36.0 38.0 86-87 36.989921298253904 38.0 38.0 38.0 36.0 38.0 88-89 36.96768242430471 38.0 38.0 38.0 36.0 38.0 90-91 36.962161514004194 38.0 38.0 38.0 36.0 38.0 92-93 36.961954249328585 38.0 38.0 38.0 35.5 38.0 94-95 36.970543314914764 38.0 38.0 38.0 35.5 38.0 96-97 36.9767465293189 38.0 38.0 38.0 35.5 38.0 98-99 36.9608894631731 38.0 38.0 38.0 35.0 38.0 100 35.32678515157043 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 5.0 20 15.0 21 63.0 22 235.0 23 726.0 24 1770.0 25 3496.0 26 6377.0 27 11209.0 28 17802.0 29 26315.0 30 34647.0 31 44395.0 32 57846.0 33 80431.0 34 126738.0 35 254839.0 36 898937.0 37 3143195.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.12337989836996 22.801351697723593 14.451435016174205 23.623833387732237 2 14.016147204397104 21.239828354983644 41.73231490340455 23.01170953721471 3 17.430173149904622 26.52977538314064 31.736376897121943 24.303674569832793 4 12.364874291814406 18.855240376968474 40.082195079635106 28.69769025158201 5 13.009549078039456 37.80701845662418 36.07475492356087 13.10867754177549 6 28.79157348598154 39.49407108581131 19.079596036645253 12.634759391561893 7 25.56887909873794 33.54869919374242 23.93716682441287 16.945254883106774 8 23.569512348692655 37.69232419084905 21.574711284102218 17.163452176356078 9 25.253591973397555 17.322189379960804 21.933128210181223 35.49109043646042 10-11 23.570882054329108 27.532941420556757 29.455933809028206 19.44024271608593 12-13 24.5328613617932 25.06517781433629 29.495941955060488 20.90601886881002 14-15 21.705279270237828 26.515589904611154 27.240047389691448 24.539083435459577 16-17 21.14119414122748 29.531840984183404 27.974007871241724 21.35295700334739 18-19 21.01369472043246 28.692561818850166 29.751100064747792 20.54264339596958 20-21 21.980262379705824 27.888042349750275 29.548509156022636 20.583186114521265 22-23 21.719890162165836 27.751053355872884 29.398323550149087 21.130732931812197 24-25 21.433039955916396 27.884599761720008 29.580913728051783 21.101446554311813 26-27 21.431616660230258 28.081499806482885 29.40309848300427 21.083785050282586 28-29 21.27934292129168 28.204161312899394 29.48923546131438 21.02726030449455 30-31 21.61674947057573 27.947209968926334 29.346976578778637 21.089063981719296 32-33 21.467192960344406 28.129110781523526 29.30257493468296 21.101121323449114 34-35 21.578434659349117 28.18871947966589 29.327524406815247 20.90532145416974 36-37 21.532653656019452 28.071048942833553 29.286218767656198 21.1100786334908 38-39 21.4043216630079 28.21925262000793 29.37624268884505 21.000183028139123 40-41 21.67311569769939 28.03463862936324 29.262803727450265 21.029441945487104 42-43 21.582779997864463 28.095339579369693 29.11212011570314 21.2097603070627 44-45 21.61409006210975 28.30813248525474 28.909274086642984 21.16850336599253 46-47 21.735571582506676 28.21244871665403 28.5762289415073 21.475750759331987 48-49 21.739287148294302 28.21621181129589 28.706187799427752 21.33831324098206 50-51 21.604034745396415 28.39511885187162 28.544650001184962 21.456196401546997 52-53 21.762027138076075 28.393018505755922 28.471692614492206 21.373261741675798 54-55 21.783461106253174 28.364900760588014 28.41194484316195 21.439693289996864 56-57 21.879940013349632 28.407019247161756 28.30773498383308 21.405305755655533 58-59 21.750129950853573 28.583359086470274 28.44637299269792 21.220137969978232 60-61 21.793108051919603 28.65648638935565 28.302602349840793 21.247803208883955 62-63 21.803622393273827 28.630747567422794 28.21090655546404 21.354723483839344 64-65 21.702496385576705 28.60287087625803 28.297808175494062 21.396824562671206 66-67 21.850827930294777 28.739340548097086 28.106100412157442 21.303731109450695 68-69 21.81548321176018 28.52710475179817 28.294267821722123 21.363144214719522 70-71 21.806029544465577 28.215776915186574 28.354038102871186 21.62415543747666 72-73 21.898761607063737 28.335197877026495 28.399064807434875 21.366975708474893 74-75 21.770817301352565 28.404723104498608 28.34600300726043 21.4784565868884 76-77 21.75020258730217 28.248988327684486 28.353398220265806 21.647410864747535 78-79 21.828570217556468 28.298375702473027 28.30618893755706 21.566865142413445 80-81 21.76077602412745 28.302159596582605 28.276969870740466 21.66009450854948 82-83 21.90067655065397 28.163680810948378 28.508727509953395 21.42691512844426 84-85 22.0619508309317 28.126971158914117 28.27872201850884 21.532355991645346 86-87 21.69777907841981 28.30210795709848 28.337578804354685 21.66253416012702 88-89 21.929292175186198 28.162121836293725 28.269031113526854 21.63955487499322 90-91 22.002938990494098 28.1865885650871 28.30691748767219 21.503554956746612 92-93 22.031544160163534 28.200795404621648 28.261335311894438 21.50632512332038 94-95 21.7285247594279 28.389575532839096 28.307710242112538 21.574189465620464 96-97 21.88196892747136 28.415106545356917 28.37169774224896 21.33122678492277 98-99 22.902160878030543 30.333942823443937 28.54316664310782 18.220729655417696 100 21.865616307537152 31.246656051516926 22.61241677595441 24.275310864991518 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1106.0 1 1133.0 2 1221.0 3 1381.5 4 1850.5 5 2557.0 6 3043.0 7 3559.5 8 4166.0 9 4608.5 10 4842.0 11 5156.0 12 6012.5 13 7836.5 14 11397.5 15 15341.0 16 18288.0 17 20056.5 18 20086.0 19 18849.5 20 17567.5 21 17098.0 22 18246.0 23 21649.5 24 27132.5 25 35040.0 26 45836.5 27 57236.5 28 67126.0 29 78824.5 30 90270.0 31 100211.0 32 112568.0 33 125466.0 34 138474.5 35 151085.5 36 162687.0 37 172739.5 38 178673.5 39 182824.0 40 188235.0 41 192137.0 42 194104.5 43 196759.5 44 200344.0 45 204226.0 46 204130.5 47 201533.5 48 197602.5 49 190389.0 50 182646.5 51 174380.0 52 164142.5 53 152884.5 54 141356.5 55 127903.5 56 114336.5 57 100380.5 58 85954.0 59 73076.5 60 59735.0 61 46227.5 62 34857.0 63 25816.5 64 18694.0 65 13386.5 66 9702.0 67 7358.0 68 5430.5 69 3798.5 70 2793.5 71 2042.0 72 1395.5 73 908.5 74 603.0 75 406.0 76 252.5 77 148.0 78 100.5 79 66.0 80 32.5 81 15.5 82 13.0 83 10.5 84 8.0 85 5.5 86 3.0 87 2.5 88 2.5 89 1.5 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.010320572702594859 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.0618006184776242E-4 22-23 0.0 24-25 4.566357457010399E-4 26-27 0.003419889097882112 28-29 0.008010750980281122 30-31 0.008507073472084412 32-33 0.0028551920121955053 34-35 0.0011641356506396873 36-37 1.0718985606653318E-4 38-39 5.820648989427545E-4 40-41 1.6270796382806713E-4 42-43 1.310141785727621E-4 44-45 1.540145204889917E-4 46-47 3.3291855380624124E-5 48-49 0.001029821042848279 50-51 5.078390601591793E-4 52-53 0.0 54-55 0.008569400458165058 56-57 0.06812336080328739 58-59 0.0810813581133308 60-61 0.048407617275117484 62-63 0.010269306948518672 64-65 8.360492991995904E-5 66-67 0.0 68-69 5.475050680719134E-4 70-71 0.003551334478444137 72-73 0.014171336672242544 74-75 0.012045623613328971 76-77 0.01774615266191026 78-79 0.007710506727097976 80-81 0.008834325572109634 82-83 0.043359682244405555 84-85 0.027681504295040626 86-87 0.009833587788491222 88-89 0.002416880784401344 90-91 1.3575011986735585E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 34.0 20-21 167.0 22-23 399.0 24-25 492.0 26-27 1205.0 28-29 2823.0 30-31 8336.0 32-33 10771.0 34-35 14799.0 36-37 23956.0 38-39 29465.0 40-41 29217.0 42-43 32837.0 44-45 38903.0 46-47 39269.0 48-49 37098.0 50-51 33991.0 52-53 32378.0 54-55 34933.0 56-57 36464.0 58-59 35631.0 60-61 35899.0 62-63 34812.0 64-65 36682.0 66-67 39057.0 68-69 39956.0 70-71 41092.0 72-73 36182.0 74-75 36812.0 76-77 38728.0 78-79 39803.0 80-81 39701.0 82-83 37508.0 84-85 37598.0 86-87 38343.0 88-89 40259.0 90-91 40524.0 92-93 39561.0 94-95 45458.0 96-97 139017.0 98-99 309440.0 100-101 3119441.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.95937097228 #Duplication Level Percentage of deduplicated Percentage of total 1 89.65097040806772 77.0634102333199 2 7.418461243833457 12.753725242043238 3 1.7627412547238601 4.5457238832885185 4 0.591250324915038 2.0329402406741135 5 0.2512396021493553 1.0798199082042232 6 0.12479129096769351 0.643618852464102 7 0.06903872671009673 0.4154167864508942 8 0.036770780359745264 0.2528634519906856 9 0.026229309186343513 0.20291894268259802 >10 0.06681155588620723 0.8298951181166825 >50 0.001002524234627539 0.05581295128116868 >100 6.569172984368631E-4 0.10014062688305744 >500 3.606166742972788E-5 0.023713762600802882 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 1.2741447780981307E-4 0.0 0.0 2.1235746301635514E-5 0.0 7 1.2741447780981307E-4 0.0 0.0 2.1235746301635514E-5 0.0 8 1.2741447780981307E-4 2.1235746301635514E-5 0.0 2.1235746301635514E-5 0.0 9 1.2741447780981307E-4 6.370723890490654E-5 0.0 2.1235746301635514E-5 0.0 10-11 1.3803235096063085E-4 6.370723890490654E-5 0.0 2.1235746301635514E-5 0.0 12-13 1.486502241114486E-4 6.370723890490654E-5 0.0 2.1235746301635514E-5 0.0 14-15 1.486502241114486E-4 8.494298520654205E-5 0.0 3.185361945245327E-5 0.0 16-17 2.5482895561962615E-4 8.494298520654205E-5 0.0 4.247149260327103E-5 0.0 18-19 2.5482895561962615E-4 8.494298520654205E-5 0.0 4.247149260327103E-5 0.0 20-21 2.5482895561962615E-4 8.494298520654205E-5 0.0 4.247149260327103E-5 0.0 22-23 2.5482895561962615E-4 1.0617873150817757E-4 0.0 7.43251120557243E-5 0.0 24-25 2.5482895561962615E-4 1.0617873150817757E-4 0.0 1.0617873150817757E-4 0.0 26-27 2.760647019212617E-4 1.0617873150817757E-4 0.0 1.0617873150817757E-4 0.0 28-29 2.760647019212617E-4 1.1679660465899533E-4 0.0 2.760647019212617E-4 0.0 30-31 2.760647019212617E-4 1.8050384356390188E-4 0.0 8.812834715178739E-4 0.0 32-33 2.760647019212617E-4 1.9112171671471963E-4 0.0 0.0024421108246880843 0.0 34-35 2.760647019212617E-4 2.229753361671729E-4 0.0 0.004809896537320444 0.0 36-37 2.760647019212617E-4 2.5482895561962615E-4 0.0 0.008324412550241122 0.0 38-39 2.760647019212617E-4 2.5482895561962615E-4 0.0 0.013357284423728737 0.0 40-41 2.760647019212617E-4 2.5482895561962615E-4 0.0 0.019441325739147315 0.0 42-43 2.973004482228972E-4 2.5482895561962615E-4 0.0 0.024644083583048013 0.0 44-45 3.07918321373715E-4 2.654468287704439E-4 0.0 0.030791832137371494 0.0 46-47 3.185361945245327E-4 2.8668257507207944E-4 0.0 0.036982052184298245 0.0 48-49 3.185361945245327E-4 2.973004482228972E-4 0.0 0.04302362200711355 0.0 50-51 4.0347917973107474E-4 2.973004482228972E-4 0.0 0.04919260630773867 0.0 52-53 4.247149260327103E-4 2.973004482228972E-4 0.0 0.055117379525894974 0.0 54-55 4.247149260327103E-4 2.973004482228972E-4 0.0 0.06116956722186109 0.0 56-57 4.459506723343458E-4 2.973004482228972E-4 0.0 0.067816355814273 0.0 58-59 4.459506723343458E-4 2.973004482228972E-4 0.0 0.07426140481681939 0.0 60-61 4.7780429178679906E-4 2.973004482228972E-4 0.0 0.08068521807306414 0.0 62-63 5.733651501441589E-4 2.973004482228972E-4 0.0 0.08672678789587943 0.0 64-65 5.733651501441589E-4 3.185361945245327E-4 0.0 0.09266217898718657 0.0 66-67 5.733651501441589E-4 3.185361945245327E-4 0.0 0.09870374881000188 0.0 68-69 5.733651501441589E-4 3.2915406767535047E-4 0.0 0.10417195348267301 0.0 70-71 6.052187695966122E-4 3.397719408261682E-4 0.0 0.1092366789756131 0.0 72-73 6.583081353507009E-4 3.397719408261682E-4 0.0 0.11327147077292382 0.0 74-75 6.583081353507009E-4 3.8224343342943925E-4 0.0 0.11620200376254952 0.0 76-77 6.583081353507009E-4 4.3533279918352803E-4 0.0 0.11932365846888995 0.0 78-79 6.583081353507009E-4 4.671864186359813E-4 0.0 0.1212030220165847 0.0 80-81 6.583081353507009E-4 4.7780429178679906E-4 0.0 0.12171267992782395 0.0 82-83 6.689260085015187E-4 4.990400380884346E-4 0.0 0.12221171996591237 0.0 84-85 6.795438816523364E-4 5.2027578439007E-4 0.0 0.122466548921532 0.0 86-87 6.795438816523364E-4 5.521294038425234E-4 0.0 0.12259396339934182 0.0 88 6.795438816523364E-4 5.733651501441589E-4 0.0 0.12259396339934182 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6315 0.0 46.559677 1 GTATCAA 10915 0.0 36.765182 1 ATCAACG 13010 0.0 30.612347 3 CAACGCA 13185 0.0 30.270859 5 TCAACGC 13265 0.0 29.991653 4 AACGCAG 13805 0.0 29.00422 6 TATCAAC 13850 0.0 28.943293 2 ACGCAGA 15565 0.0 25.669682 7 CGCAGAG 15725 0.0 25.381319 8 GTGGTAT 3090 0.0 21.71381 1 GCAGAGT 18445 0.0 21.615286 9 TGGTATC 2960 0.0 20.646156 2 GAGTACT 11220 0.0 19.10012 12-13 CAGAGTA 18485 0.0 18.667282 10-11 AGAGTAC 17235 0.0 18.48393 10-11 GTACTTT 12655 0.0 16.850042 14-15 AGTACTT 12060 0.0 16.405582 12-13 TACATGG 12875 0.0 16.364193 2 TATACTG 2660 0.0 16.225489 5 GTACATG 13355 0.0 16.128036 1 >>END_MODULE