##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139395_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5831459 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.46406088081902 25.0 18.0 32.0 18.0 33.0 2 27.691865620593404 30.0 25.0 32.0 18.0 33.0 3 29.93402165735882 31.0 29.0 33.0 25.0 33.0 4 30.348883529833614 31.0 29.0 33.0 28.0 33.0 5 31.911361290544956 33.0 32.0 33.0 31.0 33.0 6 36.581049956794686 38.0 37.0 38.0 34.0 38.0 7 36.67251437419006 38.0 37.0 38.0 34.0 38.0 8 37.17721705665769 38.0 38.0 38.0 36.0 38.0 9 37.32536317240677 38.0 38.0 38.0 36.0 38.0 10-11 37.34517982549478 38.0 38.0 38.0 37.0 38.0 12-13 37.42463352653256 38.0 38.0 38.0 37.0 38.0 14-15 37.441226543820335 38.0 38.0 38.0 37.0 38.0 16-17 37.473684887435546 38.0 38.0 38.0 37.0 38.0 18-19 37.48373554542697 38.0 38.0 38.0 37.0 38.0 20-21 37.49434085841139 38.0 38.0 38.0 37.0 38.0 22-23 37.50369861902118 38.0 38.0 38.0 37.0 38.0 24-25 37.51889792449248 38.0 38.0 38.0 37.0 38.0 26-27 37.48643429531536 38.0 38.0 38.0 37.0 38.0 28-29 37.46734372610378 38.0 38.0 38.0 37.0 38.0 30-31 37.469483337990674 38.0 38.0 38.0 37.0 38.0 32-33 37.44580214723554 38.0 38.0 38.0 37.0 38.0 34-35 37.41975825775014 38.0 38.0 38.0 37.0 38.0 36-37 37.39425850900261 38.0 38.0 38.0 37.0 38.0 38-39 37.37336083841525 38.0 38.0 38.0 37.0 38.0 40-41 37.3869509689587 38.0 38.0 38.0 37.0 38.0 42-43 37.36055624149996 38.0 38.0 38.0 37.0 38.0 44-45 37.32794682582529 38.0 38.0 38.0 37.0 38.0 46-47 37.297878988788455 38.0 38.0 38.0 37.0 38.0 48-49 37.24769740592181 38.0 38.0 38.0 37.0 38.0 50-51 37.1789000182128 38.0 38.0 38.0 37.0 38.0 52-53 37.170580061498875 38.0 38.0 38.0 36.5 38.0 54-55 37.11130821354226 38.0 38.0 38.0 36.5 38.0 56-57 37.08645639540041 38.0 38.0 38.0 36.0 38.0 58-59 37.08843028772346 38.0 38.0 38.0 36.0 38.0 60-61 37.09483207330261 38.0 38.0 38.0 36.0 38.0 62-63 37.102882640680676 38.0 38.0 38.0 36.0 38.0 64-65 37.106958312275694 38.0 38.0 38.0 36.0 38.0 66-67 37.10088666696335 38.0 38.0 38.0 36.0 38.0 68-69 37.08996260809923 38.0 38.0 38.0 36.0 38.0 70-71 37.08494909282291 38.0 38.0 38.0 36.0 38.0 72-73 37.08386109147149 38.0 38.0 38.0 36.0 38.0 74-75 37.07645803375486 38.0 38.0 38.0 36.0 38.0 76-77 37.07103449876344 38.0 38.0 38.0 36.0 38.0 78-79 37.04989205399124 38.0 38.0 38.0 36.0 38.0 80-81 37.04772130437725 38.0 38.0 38.0 36.0 38.0 82-83 36.99586793038602 38.0 38.0 38.0 36.0 38.0 84-85 36.97644348925079 38.0 38.0 38.0 36.0 38.0 86-87 36.971795850458776 38.0 38.0 38.0 36.0 38.0 88-89 36.94769950257846 38.0 38.0 38.0 35.5 38.0 90-91 36.94590040315974 38.0 38.0 38.0 35.0 38.0 92-93 36.94729471846982 38.0 38.0 38.0 35.0 38.0 94-95 36.95037696776521 38.0 38.0 38.0 35.0 38.0 96-97 36.958570265884646 38.0 38.0 38.0 35.0 38.0 98-99 36.94959343658202 38.0 38.0 38.0 35.0 38.0 100 35.33753378884239 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 3.0 19 5.0 20 14.0 21 70.0 22 252.0 23 837.0 24 1915.0 25 4150.0 26 7596.0 27 13286.0 28 22361.0 29 33067.0 30 43777.0 31 55763.0 32 72063.0 33 101116.0 34 160028.0 35 326125.0 36 1165970.0 37 3823061.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.11151566014611 22.634009773540377 14.311272702080217 23.94320186423329 2 14.186416589678084 20.514183706911616 41.8076742541654 23.4917254492449 3 17.713114333822805 26.073903632007017 31.617319096301628 24.59566293786855 4 12.483496840156127 18.508335564050093 39.29670087708754 29.711466718706248 5 13.162109173707643 37.55134006772576 35.84602069567839 13.440530062888206 6 29.22095482451304 38.7527032257279 18.725296705335662 13.301045244423392 7 25.833432079347553 33.0678651774796 23.193526697178186 17.905176045994665 8 23.95186178964818 37.11630314128934 21.279700328854236 17.65213474020824 9 25.186407038101443 17.107656934568176 21.335998418234613 36.36993760909577 10-11 24.008391381985195 27.056299289766077 29.03624118766847 19.899068140580255 12-13 24.98407345400182 24.257059854146277 29.039868067322434 21.71899862452947 14-15 22.140171096118486 25.740873767611163 26.62114232475955 25.497812811510805 16-17 21.71709515577491 28.924168034106046 27.29964319392454 22.059093616194506 18-19 21.603778745593512 27.912457242690035 29.149403262545448 21.334360749171005 20-21 22.665378007241163 27.12359143619961 28.84386945601069 21.367161100548532 22-23 22.1825995997856 27.2926259763447 28.71788280287962 21.806891620990086 24-25 22.028913672744764 27.40815854883668 29.01235843624169 21.550569342176857 26-27 22.087687671410052 27.52445400723751 28.8089385336867 21.57891978766574 28-29 21.736943001731714 27.74649453408825 28.871824764111608 21.644737700068433 30-31 22.54916037779435 27.347770760148745 28.782748323220243 21.32032053883666 32-33 21.709247829673167 27.850492200004144 28.78782182150782 21.652438148814866 34-35 21.962097740559994 27.729108358743794 28.945506973921546 21.363286926774663 36-37 21.90525837315231 27.54938919610172 28.971748875158404 21.573603555587564 38-39 21.786108534155257 27.22065090060073 29.225787092560356 21.767453472683655 40-41 22.069400848666106 27.14435969735622 29.16731963611476 21.618919817862913 42-43 22.272488074153816 27.08708369299611 29.025458526513866 21.614969706336204 44-45 21.99810241572019 27.58951810757496 28.754966368556488 21.657413108148358 46-47 22.34495763210724 27.045914872136535 28.34064119079878 22.268486304957438 48-49 22.26059636753813 27.07386683045848 28.532059247037267 22.13347755496612 50-51 21.884890304662044 27.373771068071584 28.565817157215907 22.175521470050466 52-53 22.091655105271574 27.415285128144685 28.649816311967285 21.843243454616452 54-55 22.163032973740307 27.38022685341459 28.272815969444608 22.18392420340049 56-57 22.40733032955663 27.75792651723154 27.86609531353746 21.968647839674365 58-59 21.98549114313999 28.03863446695008 28.466206694906187 21.509667695003746 60-61 22.232571992825143 28.55006037541843 27.700517056411417 21.51685057534501 62-63 22.050431349707644 28.661995034972183 27.67085508769929 21.616718527620886 64-65 21.87311698539268 28.635404352559608 27.745274809842673 21.74620385220504 66-67 22.095824138259697 28.665177244403615 27.53035532779013 21.708643289546554 68-69 22.130828589755055 28.194800710485463 27.887038180992956 21.787332518766526 70-71 22.152044690861057 27.64475823521679 28.0633776946541 22.13981937926805 72-73 22.3590828193929 27.53832828204462 28.1986791160238 21.903909782538676 74-75 22.10082756168581 27.734873570684705 28.060302177426422 22.10399669020307 76-77 22.16812022004562 27.696322595960325 27.920135412688747 22.21542177130531 78-79 22.25192593140066 27.704859775848593 27.88025007268403 22.162964220066712 80-81 22.16805142928526 27.610209598731668 27.973658438141126 22.248080533841947 82-83 22.35803992415879 27.483091689723853 28.122365811412593 22.036502574704762 84-85 22.65787509469754 27.48043060830862 27.84601040662543 22.01568389036841 86-87 22.103824371431593 27.65533829141068 27.96897934337063 22.271857993787098 88-89 22.403470031614937 27.597275758891193 27.927123545242395 22.072130664251475 90-91 22.40126440812866 27.59610214748242 27.978079098024782 22.024554346364134 92-93 22.489138805455266 27.63970667291209 27.810319724014498 22.060834797618146 94-95 22.2775141057421 27.732520524503883 27.822458024064517 22.167507345689497 96-97 22.304385470071004 27.8277201817479 27.956469215784697 21.911425132396406 98-99 23.33788218939447 29.7908251542 28.112452695523615 18.75883996088191 100 22.52697196806708 30.66692410546585 21.865564408297935 24.94053951816914 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1107.0 1 1150.0 2 1480.5 3 1884.5 4 2460.5 5 3436.0 6 4122.5 7 4878.0 8 5826.0 9 6415.0 10 6570.0 11 6794.5 12 7847.5 13 10186.5 14 14639.5 15 19617.0 16 23283.0 17 25388.0 18 25260.5 19 23414.0 20 21128.0 21 19291.0 22 19505.5 23 22609.5 24 28167.0 25 36795.5 26 49986.0 27 64700.0 28 74695.5 29 85497.5 30 96431.5 31 105533.0 32 119048.5 33 134374.0 34 150206.5 35 164670.0 36 181036.5 37 197435.5 38 203988.5 39 207439.0 40 216494.0 41 223449.5 42 228053.0 43 243345.5 44 262321.5 45 269743.5 46 264483.5 47 256615.0 48 249584.5 49 241909.0 50 233276.0 51 224227.5 52 215140.0 53 203970.5 54 191291.0 55 178051.5 56 164223.0 57 149216.0 58 133129.0 59 115880.5 60 95218.0 61 72480.0 62 53998.0 63 40044.0 64 29042.0 65 20635.0 66 14598.0 67 10625.5 68 7843.0 69 5662.5 70 4167.0 71 2988.5 72 2133.5 73 1457.0 74 936.0 75 602.5 76 399.5 77 250.5 78 154.5 79 98.5 80 63.5 81 41.5 82 27.5 83 16.0 84 7.5 85 4.5 86 4.5 87 4.0 88 3.0 89 1.5 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.008711370516366487 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 5.1445745488293865E-5 22-23 8.574674698278634E-6 24-25 3.8589146502408393E-4 26-27 0.002693000899239313 28-29 0.0061941103790469545 30-31 0.006852467575291273 32-33 0.0024777802048934956 34-35 9.315093115999561E-4 36-37 4.328226372471926E-5 38-39 5.571242569028784E-4 40-41 1.138771580816429E-4 42-43 9.697771593146391E-5 44-45 1.9542539355787297E-4 46-47 3.5838921965227285E-5 48-49 8.224469822205941E-4 50-51 5.922473545677396E-4 52-53 0.0 54-55 0.007536551117004724 56-57 0.062114609518367066 58-59 0.07401066550751406 60-61 0.04442945974687154 62-63 0.009336778757756892 64-65 9.653381811329672E-5 66-67 3.902244483226251E-5 68-69 4.935547670085883E-4 70-71 0.0029887644447785283 72-73 0.012405549463052374 74-75 0.010620563946834622 76-77 0.016428474426272682 78-79 0.0065252399094096565 80-81 0.007614719220657185 82-83 0.04018266939346942 84-85 0.025113799253592528 86-87 0.008932772475338547 88-89 0.0021495852506866063 90-91 1.1088185671225537E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 42.0 20-21 202.0 22-23 456.0 24-25 612.0 26-27 1325.0 28-29 3596.0 30-31 10623.0 32-33 13501.0 34-35 18249.0 36-37 29876.0 38-39 36387.0 40-41 35632.0 42-43 40575.0 44-45 47440.0 46-47 48858.0 48-49 45897.0 50-51 41383.0 52-53 39434.0 54-55 42733.0 56-57 44691.0 58-59 44472.0 60-61 46778.0 62-63 47226.0 64-65 52763.0 66-67 58586.0 68-69 58567.0 70-71 72050.0 72-73 46891.0 74-75 45573.0 76-77 48064.0 78-79 49088.0 80-81 49618.0 82-83 46172.0 84-85 45723.0 86-87 47170.0 88-89 49247.0 90-91 49941.0 92-93 49433.0 94-95 55877.0 96-97 173144.0 98-99 386834.0 100-101 3806730.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.45379188164169 #Duplication Level Percentage of deduplicated Percentage of total 1 88.77731383549738 74.08803472638789 2 7.607853817542411 12.698084983102751 3 2.008929182924502 5.029582738102136 4 0.7503550452733745 2.5047989514233606 5 0.3513832762122998 1.4662133401855342 6 0.16627378261901687 0.8325706590036459 7 0.10353818536492916 0.6048457921273346 8 0.06429887518927212 0.42927879586153356 9 0.04324920823934693 0.3248379381107018 >10 0.12313340724174836 1.5224324333010864 >50 0.002290841606830252 0.1334470779799329 >100 0.0011426515653982269 0.17556850489565407 >500 1.699219484371108E-4 0.10082428418744438 >1k 6.796877498404062E-5 0.08947977533104928 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 1.7148367158201746E-5 0.0 7 0.0 0.0 0.0 1.7148367158201746E-5 0.0 8 0.0 0.0 0.0 1.7148367158201746E-5 0.0 9 0.0 0.0 0.0 8.574183579100874E-5 0.0 10-11 8.574183579100873E-6 0.0 0.0 2.6579969095212705E-4 0.0 12-13 1.7148367158201746E-5 0.0 0.0 3.515415267431358E-4 0.0 14-15 1.7148367158201746E-5 0.0 0.0 4.544317296923463E-4 0.0 16-17 1.7148367158201746E-5 0.0 0.0 5.401735654833549E-4 0.0 18-19 3.429673431640349E-5 0.0 0.0 5.487477490624559E-4 0.0 20-21 3.429673431640349E-5 0.0 0.0 5.830444833788594E-4 0.0 22-23 4.287091789550437E-5 0.0 0.0 5.830444833788594E-4 0.0 24-25 1.286127536865131E-4 0.0 0.0 6.08767034116162E-4 0.0 26-27 1.8863203874021922E-4 0.0 0.0 6.859346863280699E-4 0.0 28-29 2.6579969095212705E-4 0.0 0.0 0.0010717729473876093 0.0 30-31 3.086706088476314E-4 0.0 0.0 0.002152120078354319 0.0 32-33 3.258189760058332E-4 0.0 0.0 0.004501446379027958 0.0 34-35 3.258189760058332E-4 0.0 0.0 0.007571004100346071 0.0 36-37 3.258189760058332E-4 0.0 0.0 0.012166766498744139 0.0 38-39 3.258189760058332E-4 0.0 0.0 0.01907755846349944 0.0 40-41 3.258189760058332E-4 0.0 0.0 0.02609124063120396 0.0 42-43 3.258189760058332E-4 0.0 0.0 0.03355078034502172 0.0 44-45 3.4296734316403496E-4 0.0 0.0 0.04159336454221833 0.0 46-47 3.4296734316403496E-4 0.0 0.0 0.051247895252285916 0.0 48-49 3.6868989390133756E-4 0.0 0.0 0.061039612899619115 0.0 50-51 4.0298662821774105E-4 0.0 0.0 0.06973383504882741 0.0 52-53 4.1156081179684193E-4 0.0 0.0 0.07798219965192245 0.0 54-55 4.287091789550437E-4 0.0 0.0 0.08606765476701457 0.0 56-57 4.458575461132454E-4 0.0 0.0 0.09194954470227776 0.0 58-59 4.458575461132454E-4 0.0 0.0 0.09798576994196478 0.0 60-61 4.458575461132454E-4 0.0 0.0 0.10347324743258934 0.0 62-63 4.544317296923463E-4 0.0 0.0 0.10926082134848243 0.0 64-65 4.630059132714472E-4 0.0 0.0 0.11514271128374563 0.0 66-67 4.7158009685054807E-4 0.0 0.0 0.12063018877437018 0.0 68-69 4.801542804296489E-4 0.0 0.0 0.1256718087188815 0.0 70-71 4.801542804296489E-4 0.0 0.0 0.1305848159097063 0.0 72-73 4.801542804296489E-4 0.0 0.0 0.13470042402767474 0.0 74-75 4.801542804296489E-4 0.0 0.0 0.13794146542057484 0.0 76-77 4.801542804296489E-4 0.0 0.0 0.1413196937507406 0.0 78-79 4.801542804296489E-4 0.0 0.0 0.14374618770362613 0.0 80-81 4.801542804296489E-4 0.0 0.0 0.14448356749142882 0.0 82-83 5.315993819042541E-4 0.0 0.0 0.14498944432259575 0.0 84-85 5.315993819042541E-4 0.0 0.0 0.14521237309565238 0.0 86-87 5.315993819042541E-4 0.0 0.0 0.1452981149314434 0.0 88 5.315993819042541E-4 0.0 0.0 0.1452981149314434 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7615 0.0 50.52685 1 CTTATAC 6405 0.0 43.573914 1 GTATCAA 13870 0.0 36.987453 1 TATACAC 9140 0.0 34.02858 3 ATCAACG 16980 0.0 30.084908 3 TCAACGC 17145 0.0 29.795378 4 CAACGCA 17500 0.0 29.28834 5 TATCAAC 17825 0.0 29.019741 2 TTATACA 10295 0.0 28.764898 2 AACGCAG 18260 0.0 28.139328 6 ACACATC 11260 0.0 25.010954 6 ACATCTC 11345 0.0 24.786009 8 ACGCAGA 20700 0.0 24.760674 7 CGCAGAG 20940 0.0 24.517576 8 TACACAT 12440 0.0 24.145483 5 GTGGTAT 3625 0.0 21.627893 1 CACATCT 12890 0.0 21.583775 7 ATACACA 15135 0.0 21.506914 4 CATCTCC 13070 0.0 21.449514 9 GCAGAGT 24360 0.0 21.057962 9 >>END_MODULE