##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139392_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5446407 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.68365878642562 30.0 18.0 33.0 18.0 34.0 2 31.576603437826076 33.0 32.0 33.0 27.0 34.0 3 32.35596182951439 33.0 33.0 33.0 30.0 34.0 4 32.774713861817524 33.0 33.0 34.0 31.0 34.0 5 33.07275824226871 33.0 33.0 34.0 32.0 34.0 6 36.25830405256163 38.0 36.0 38.0 33.0 38.0 7 36.97167343534921 38.0 38.0 38.0 35.0 38.0 8 36.48139608369334 38.0 37.0 38.0 34.0 38.0 9 37.07164760180427 38.0 38.0 38.0 36.0 38.0 10-11 37.25397284852197 38.0 38.0 38.0 36.5 38.0 12-13 37.32961023662021 38.0 38.0 38.0 36.0 38.0 14-15 37.30542273098577 38.0 38.0 38.0 36.5 38.0 16-17 37.38111253896376 38.0 38.0 38.0 37.0 38.0 18-19 37.402151087863984 38.0 38.0 38.0 37.0 38.0 20-21 37.43015172661114 38.0 38.0 38.0 37.0 38.0 22-23 37.44480412450063 38.0 38.0 38.0 37.0 38.0 24-25 37.46818318465597 38.0 38.0 38.0 37.0 38.0 26-27 37.43411080317475 38.0 38.0 38.0 37.0 38.0 28-29 37.41540896887406 38.0 38.0 38.0 37.0 38.0 30-31 37.42392902255508 38.0 38.0 38.0 37.0 38.0 32-33 37.40614389684209 38.0 38.0 38.0 37.0 38.0 34-35 37.38248666030336 38.0 38.0 38.0 37.0 38.0 36-37 37.353950098046695 38.0 38.0 38.0 37.0 38.0 38-39 37.35457463421916 38.0 38.0 38.0 37.0 38.0 40-41 37.34331903562479 38.0 38.0 38.0 37.0 38.0 42-43 37.306308650415446 38.0 38.0 38.0 37.0 38.0 44-45 37.27597523696164 38.0 38.0 38.0 37.0 38.0 46-47 37.24612929163302 38.0 38.0 38.0 37.0 38.0 48-49 37.19022164767997 38.0 38.0 38.0 37.0 38.0 50-51 37.11620893697056 38.0 38.0 38.0 36.5 38.0 52-53 37.10619413606274 38.0 38.0 38.0 36.0 38.0 54-55 37.047386339775244 38.0 38.0 38.0 36.0 38.0 56-57 37.017446507166284 38.0 38.0 38.0 36.0 38.0 58-59 37.02117039660662 38.0 38.0 38.0 36.0 38.0 60-61 37.0361762583713 38.0 38.0 38.0 36.0 38.0 62-63 37.044933117143145 38.0 38.0 38.0 36.0 38.0 64-65 37.05124630774607 38.0 38.0 38.0 36.0 38.0 66-67 37.052176646037985 38.0 38.0 38.0 36.0 38.0 68-69 37.04102396926844 38.0 38.0 38.0 36.0 38.0 70-71 37.033238509138556 38.0 38.0 38.0 36.0 38.0 72-73 37.036844817543844 38.0 38.0 38.0 36.0 38.0 74-75 37.02439076699318 38.0 38.0 38.0 36.0 38.0 76-77 37.013001816911284 38.0 38.0 38.0 36.0 38.0 78-79 36.986065194504974 38.0 38.0 38.0 36.0 38.0 80-81 36.97950723611541 38.0 38.0 38.0 36.0 38.0 82-83 36.92037139634006 38.0 38.0 38.0 35.5 38.0 84-85 36.90157357806458 38.0 38.0 38.0 35.0 38.0 86-87 36.89300793234219 38.0 38.0 38.0 35.0 38.0 88-89 36.869996653402225 38.0 38.0 38.0 35.0 38.0 90-91 36.86642153722749 38.0 38.0 38.0 35.0 38.0 92-93 36.864738962261676 38.0 38.0 38.0 35.0 38.0 94-95 36.86740447303573 38.0 38.0 38.0 35.0 38.0 96-97 36.87857364151364 38.0 38.0 38.0 35.0 38.0 98-99 36.86703396985374 38.0 38.0 38.0 35.0 38.0 100 35.253035307016525 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 16.0 21 77.0 22 313.0 23 850.0 24 2097.0 25 4322.0 26 8259.0 27 13465.0 28 21509.0 29 31964.0 30 43226.0 31 56076.0 32 72639.0 33 98613.0 34 148401.0 35 275763.0 36 848946.0 37 3819869.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.53168722058414 18.273386472953636 13.502644954738049 22.692281351724173 2 14.744008653590676 20.347340822168235 42.602408381981625 22.306242142259464 3 18.4038210879209 26.179883361636396 30.194401556842887 25.22189399359982 4 12.693854866153043 18.242724056428393 38.83964235504251 30.223778722376053 5 13.819808178125506 37.44110566837917 35.231557244987386 13.50752890850794 6 30.080767008414906 37.61169519648458 18.823437176105273 13.484100618995237 7 26.845221078777254 32.78256656177182 22.872087965515615 17.500124393935305 8 24.597298732907767 36.49147043179109 20.96376565320954 17.94746518209161 9 25.80567335492922 17.34213032555224 21.229702444198534 35.622493875320004 10-11 24.46661624810632 26.731779317998082 28.614883169766784 20.18672126412881 12-13 25.384028406250213 24.308319227703695 28.76438540123792 21.543266964808176 14-15 22.45183843219943 25.587244948825894 26.718522872051242 25.24239374692343 16-17 21.896545741072966 28.67248995530448 27.337701717848116 22.093262585774436 18-19 21.847283906619538 27.72941867914021 29.257150631599877 21.16614678264037 20-21 22.76775816595584 26.911444213106893 29.13829481837044 21.182502802566823 22-23 22.48169396501506 26.72078381421228 29.00889473569691 21.78862748507575 24-25 22.211887701857513 26.830001261566427 29.109690354305513 21.848420682270547 26-27 22.057048906763576 27.03938119528113 29.05005390904143 21.853515988913866 28-29 22.04008330147839 27.136056478468497 29.071109877641195 21.75275034241192 30-31 22.35322095490489 26.91769683904518 28.99440149396491 21.734680712085016 32-33 22.103762937100573 27.119071086874946 28.90247237861297 21.87469359741151 34-35 22.253798895933524 27.150158788448802 28.906261911905883 21.68978040371179 36-37 22.265875689954424 27.003868133311848 28.88331460548538 21.84694157124835 38-39 22.043180607618183 27.231985983713685 28.96920992164465 21.755623487023485 40-41 22.341875744318195 27.03933908067303 28.81385659432687 21.80492858068191 42-43 22.25580979027645 27.124062199951975 28.64455296491538 21.97557504485619 44-45 22.288903279112684 27.25615122505119 28.494253678679645 21.960691817156484 46-47 22.332330930148693 27.245141658231052 28.274557395842475 22.14797001577778 48-49 22.271965857272296 27.3589087640378 28.253392292536024 22.115733086153888 50-51 22.269964788119662 27.554728576799892 28.065505164076725 22.109801471003724 52-53 22.450465945134205 27.415873779802304 27.956028674092043 22.177631600971452 54-55 22.469773759047943 27.300132210368172 28.024205582660635 22.205888447923254 56-57 22.42594573074347 27.401503639782 27.985969306433812 22.18658132304072 58-59 22.36589642304182 27.428922261535703 28.054210368935596 22.15097094648688 60-61 22.437416311107796 27.374892241433983 28.10624499896237 22.081446448495846 62-63 22.373655508111902 27.433210744915538 28.037201565759773 22.155932181212783 64-65 22.319222828596192 27.44300504737828 28.0383418623773 22.199430261648228 66-67 22.445617248424043 27.513110950670256 27.85160515470096 22.189666646204746 68-69 22.3749244146675 27.450319048425847 27.989629760487617 22.185126776419033 70-71 22.38935708499696 27.23929410635345 28.00781962798091 22.363529180668674 72-73 22.498666052636715 27.219202613566303 27.946322576681844 22.335808757115142 74-75 22.30028204559897 27.373317413086845 27.951625421248284 22.37477512006591 76-77 22.45036565878406 27.326210245041338 27.833599300194923 22.389824795979678 78-79 22.51592420471456 27.37554681739716 27.73337013530745 22.375158842580834 80-81 22.454710503168513 27.372684430788834 27.746385888099685 22.42621917794296 82-83 22.48180341305639 27.356933755187473 27.814910381279457 22.346352450476683 84-85 22.657524949345202 27.310542949238986 27.72066454776133 22.31126755365448 86-87 22.385869283930035 27.424083108826547 27.80045546048635 22.389592146757067 88-89 22.51607858413366 27.430307995039083 27.711785615059192 22.34182780576807 90-91 22.5656340901355 27.4345278850735 27.67930713484598 22.32053088994502 92-93 22.62927327456461 27.44098978246847 27.666922961868885 22.262813981098034 94-95 22.498860981408406 27.589125917309907 27.611794128720728 22.300218972560955 96-97 22.551949231721355 27.613640667162986 27.80050306156152 22.033907039554137 98-99 23.64777373163719 29.5274973375601 27.987392196588324 18.83733673421439 100 22.595378835943773 30.40098994040697 21.886960262457976 25.11667096119128 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 914.0 1 832.5 2 1058.0 3 1516.5 4 1969.5 5 2861.5 6 3731.0 7 4791.5 8 6265.0 9 7127.0 10 7069.0 11 6908.0 12 7598.5 13 9436.5 14 12753.0 15 16648.5 16 19956.0 17 22335.0 18 22779.0 19 21373.0 20 19221.0 21 17358.0 22 17195.5 23 19516.5 24 24119.0 25 31195.0 26 41317.5 27 52344.5 28 62446.5 29 73959.0 30 85692.5 31 96595.5 32 108715.5 33 121494.0 34 134740.5 35 147486.5 36 161403.0 37 174209.0 38 181959.0 39 188860.5 40 198621.0 41 206799.0 42 211509.0 43 216643.5 44 221299.5 45 225926.5 46 228789.0 47 229381.5 48 229010.5 49 225569.5 50 220475.0 51 215129.5 52 207897.0 53 197838.0 54 187196.0 55 175135.5 56 161515.5 57 146865.0 58 131642.0 59 116122.5 60 98044.5 61 79345.0 62 62582.5 63 48118.0 64 36562.5 65 27497.5 66 20152.0 67 15302.5 68 11791.0 69 8620.0 70 6147.0 71 4434.0 72 3240.5 73 2227.0 74 1480.5 75 985.5 76 633.5 77 395.0 78 242.0 79 150.0 80 90.5 81 59.0 82 43.5 83 29.0 84 21.0 85 16.0 86 9.5 87 5.5 88 2.5 89 1.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006316090589630926 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 8.262412760396823E-5 22-23 0.0 24-25 4.5908319983193886E-4 26-27 0.003140501347063874 28-29 0.007348833799785248 30-31 0.007705754920763599 32-33 0.0025340925290252654 34-35 8.501418859085563E-4 36-37 1.2989325279704243E-4 38-39 6.439894042276691E-4 40-41 8.45481810961916E-5 42-43 1.418525029023022E-4 44-45 2.096584501837704E-4 46-47 7.69131299846318E-5 48-49 0.0010182665379577763 50-51 5.083592840971724E-4 52-53 0.0 54-55 0.008377711242997547 56-57 0.06762741806466947 58-59 0.08089916315305269 60-61 0.04884866357420275 62-63 0.009536433263569843 64-65 4.120475280341687E-5 66-67 0.0 68-69 5.238948987201143E-4 70-71 0.0032138479634247186 72-73 0.012370078188491626 74-75 0.011365703832769098 76-77 0.015943536886023343 78-79 0.0066865095129003665 80-81 0.007942472198861829 82-83 0.044308953151365585 84-85 0.02768257479216416 86-87 0.008795624749821221 88-89 0.0022455378813647964 90-91 1.1569656447150561E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 26.0 20-21 194.0 22-23 464.0 24-25 510.0 26-27 1455.0 28-29 3678.0 30-31 10943.0 32-33 14034.0 34-35 19171.0 36-37 30090.0 38-39 34830.0 40-41 34653.0 42-43 38775.0 44-45 45324.0 46-47 45652.0 48-49 42266.0 50-51 37644.0 52-53 34441.0 54-55 36672.0 56-57 37130.0 58-59 39097.0 60-61 38318.0 62-63 37509.0 64-65 39443.0 66-67 41561.0 68-69 42339.0 70-71 41673.0 72-73 39014.0 74-75 39394.0 76-77 40658.0 78-79 42467.0 80-81 42425.0 82-83 39799.0 84-85 39105.0 86-87 41019.0 88-89 42082.0 90-91 43087.0 92-93 42818.0 94-95 51020.0 96-97 168041.0 98-99 375649.0 100-101 3651937.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.89511063824476 #Duplication Level Percentage of deduplicated Percentage of total 1 91.45366182616405 80.3832972448331 2 6.249956957056766 10.986813164495441 3 1.3503119326034898 3.5605745013697754 4 0.4509255791258492 1.5853661466752444 5 0.1972973900640888 0.8670737964160008 6 0.09927711398626995 0.52355837506013 7 0.0600404520866517 0.369408352524854 8 0.03667123226906273 0.25785776140240324 9 0.022712729871061293 0.17967041144221493 >10 0.07714184211159603 1.031510397353383 >50 0.0013866464225168668 0.08126027440239078 >100 4.957009050537135E-4 0.08086031067528116 >500 9.044800141024602E-5 0.056683050833113535 >1k 3.0149332059645225E-5 0.03606621251667359 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.672145691645887E-5 2 0.0 1.8360728458229434E-5 0.0 0.0 3.672145691645887E-5 3 0.0 1.8360728458229434E-5 0.0 0.0 3.672145691645887E-5 4 0.0 7.344291383291774E-5 0.0 1.8360728458229434E-5 3.672145691645887E-5 5 0.0 7.344291383291774E-5 0.0 1.8360728458229434E-5 3.672145691645887E-5 6 0.0 7.344291383291774E-5 0.0 1.8360728458229434E-5 3.672145691645887E-5 7 0.0 7.344291383291774E-5 0.0 1.8360728458229434E-5 3.672145691645887E-5 8 0.0 7.344291383291774E-5 0.0 1.8360728458229434E-5 5.50821853746883E-5 9 0.0 7.344291383291774E-5 0.0 3.672145691645887E-5 5.50821853746883E-5 10-11 9.180364229114717E-6 7.344291383291774E-5 0.0 4.590182114557358E-5 9.180364229114718E-5 12-13 1.8360728458229434E-5 7.344291383291774E-5 0.0 5.50821853746883E-5 1.2852509920760605E-4 14-15 1.8360728458229434E-5 1.5606619189495019E-4 0.0 6.426254960380302E-5 1.652465561240649E-4 16-17 1.8360728458229434E-5 1.652465561240649E-4 0.0 1.1934473497849133E-4 1.652465561240649E-4 18-19 1.8360728458229434E-5 1.652465561240649E-4 0.0 1.4688582766583547E-4 1.744269203531796E-4 20-21 1.8360728458229434E-5 1.652465561240649E-4 0.0 1.4688582766583547E-4 2.0196801304052378E-4 22-23 1.8360728458229434E-5 2.0196801304052378E-4 0.0 1.744269203531796E-4 2.478698341860974E-4 24-25 1.8360728458229434E-5 2.111483772696385E-4 0.0 2.570501984152121E-4 2.9377165533167094E-4 26-27 1.8360728458229434E-5 2.203287414987532E-4 0.0 3.488538407063592E-4 3.213127480190151E-4 28-29 3.672145691645887E-5 2.203287414987532E-4 0.0 7.344291383291773E-4 3.304931122481298E-4 30-31 5.50821853746883E-5 2.3868946995698264E-4 0.0 0.002047221223092582 3.3967347647724457E-4 32-33 5.50821853746883E-5 2.754109268734415E-4 0.0 0.004287230094996573 3.8557529762281814E-4 34-35 5.50821853746883E-5 3.1213238378990037E-4 0.0 0.008390852905410851 4.314771187683917E-4 36-37 5.50821853746883E-5 3.58034204935474E-4 0.0 0.014716123859270892 4.5901821145573584E-4 38-39 5.50821853746883E-5 3.763949333937034E-4 0.0 0.033379804337061114 4.957396683721948E-4 40-41 5.50821853746883E-5 4.7737893991396527E-4 0.0 0.05313594815811598 5.324611252886536E-4 42-43 5.50821853746883E-5 4.8655930414308E-4 0.0 0.06273860914176997 5.50821853746883E-4 44-45 5.50821853746883E-5 5.600022179759977E-4 0.0 0.07473734518922291 5.600022179759977E-4 46-47 5.50821853746883E-5 6.242647675798007E-4 0.0 0.08654329358786444 5.783629464342272E-4 48-49 5.50821853746883E-5 6.242647675798007E-4 0.0 0.09819317579461101 5.875433106633419E-4 50-51 5.50821853746883E-5 6.977076814127186E-4 0.0 0.11045814240470828 5.875433106633419E-4 52-53 5.50821853746883E-5 6.977076814127186E-4 0.0 0.14598615197138223 6.059040391215713E-4 54-55 5.50821853746883E-5 6.977076814127186E-4 0.0 0.19006108063536198 6.334451318089154E-4 56-57 5.50821853746883E-5 6.977076814127186E-4 0.0 0.25260690212832054 6.426254960380302E-4 58-59 5.50821853746883E-5 7.068880456418333E-4 0.0 0.29257820798188605 6.518058602671449E-4 60-61 5.50821853746883E-5 7.344291383291774E-4 0.0 0.30692711727199234 6.79346952954489E-4 62-63 6.426254960380302E-5 7.711505952456363E-4 0.0 0.3196143806366289 6.79346952954489E-4 64-65 7.344291383291774E-5 8.262327806203246E-4 0.0 0.3262976857954244 7.252487741000626E-4 66-67 7.344291383291774E-5 8.262327806203246E-4 0.0 0.3320170527101629 7.344291383291774E-4 68-69 7.344291383291774E-5 8.262327806203246E-4 0.0 0.3378190429029634 7.436095025582922E-4 70-71 7.344291383291774E-5 8.44593509078554E-4 0.0 0.34263873412324863 7.711505952456363E-4 72-73 7.344291383291774E-5 8.44593509078554E-4 0.0 0.34627415835797803 8.44593509078554E-4 74-75 7.344291383291774E-5 8.721346017658981E-4 0.0 0.3491935141828365 8.44593509078554E-4 76-77 7.344291383291774E-5 8.813149659950128E-4 0.0 0.35240664166302665 8.629542375367834E-4 78-79 7.344291383291774E-5 8.813149659950128E-4 0.0 0.35448140397880656 8.996756944532423E-4 80-81 9.180364229114718E-5 8.813149659950128E-4 0.0 0.35508730801792815 9.272167871405865E-4 82-83 9.180364229114718E-5 9.363971513697011E-4 0.0 0.35546370295132185 0.0010006597009735042 84-85 9.180364229114718E-5 9.363971513697011E-4 0.0 0.35560140841475857 0.0010465615221190777 86-87 9.180364229114718E-5 9.547578798279305E-4 0.0 0.35569321205704973 0.0010465615221190777 88 9.180364229114718E-5 9.914793367443895E-4 0.0 0.3557023924212788 0.0010649222505773072 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7990 0.0 51.060093 1 GTATCAA 14395 0.0 37.42097 1 ATCAACG 16780 0.0 31.410345 3 TCAACGC 16790 0.0 31.391636 4 CAACGCA 17135 0.0 30.884628 5 TATCAAC 17390 0.0 30.532557 2 AACGCAG 17810 0.0 29.8344 6 ACGCAGA 19950 0.0 26.655598 7 CGCAGAG 20215 0.0 26.306166 8 GTGGTAT 3775 0.0 22.363548 1 GCAGAGT 23980 0.0 22.211683 9 GTACATG 17595 0.0 21.311312 1 TACATGG 17350 0.0 20.97006 2 GAGTACT 13825 0.0 20.952751 12-13 TGGTATC 3825 0.0 20.278627 2 ACATGGG 17545 0.0 20.17373 3 CAGAGTA 23120 0.0 20.081707 10-11 ACCGAAC 705 0.0 19.450035 8 AGAGTAC 21625 0.0 18.527424 10-11 GTACTTT 15525 0.0 18.520658 14-15 >>END_MODULE