##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139391_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4634450 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.647612985359643 30.0 18.0 33.0 18.0 34.0 2 31.659027716341743 33.0 32.0 33.0 27.0 34.0 3 32.4432234677254 33.0 33.0 33.0 31.0 34.0 4 32.81520633516383 33.0 33.0 34.0 31.0 34.0 5 33.13929765128548 33.0 33.0 34.0 33.0 34.0 6 36.420161184175036 38.0 37.0 38.0 34.0 38.0 7 37.099893622759986 38.0 38.0 38.0 36.0 38.0 8 36.62312140599208 38.0 37.0 38.0 34.0 38.0 9 37.211646473691594 38.0 38.0 38.0 36.0 38.0 10-11 37.36087755828631 38.0 38.0 38.0 36.5 38.0 12-13 37.429397447377795 38.0 38.0 38.0 37.0 38.0 14-15 37.387100087389015 38.0 38.0 38.0 36.5 38.0 16-17 37.457914207726915 38.0 38.0 38.0 37.0 38.0 18-19 37.47863360269288 38.0 38.0 38.0 37.0 38.0 20-21 37.50637634740688 38.0 38.0 38.0 37.0 38.0 22-23 37.51718316110501 38.0 38.0 38.0 37.0 38.0 24-25 37.537401911068386 38.0 38.0 38.0 37.0 38.0 26-27 37.51133044911978 38.0 38.0 38.0 37.0 38.0 28-29 37.498451136153164 38.0 38.0 38.0 37.0 38.0 30-31 37.50651665269419 38.0 38.0 38.0 37.0 38.0 32-33 37.49332583797913 38.0 38.0 38.0 37.0 38.0 34-35 37.477559604165606 38.0 38.0 38.0 37.0 38.0 36-37 37.457833237569 38.0 38.0 38.0 37.0 38.0 38-39 37.45790795923831 38.0 38.0 38.0 37.0 38.0 40-41 37.44700189410767 38.0 38.0 38.0 37.0 38.0 42-43 37.41744575497647 38.0 38.0 38.0 37.0 38.0 44-45 37.393225347051406 38.0 38.0 38.0 37.0 38.0 46-47 37.37446805805809 38.0 38.0 38.0 37.0 38.0 48-49 37.32780699947952 38.0 38.0 38.0 37.0 38.0 50-51 37.255033155822176 38.0 38.0 38.0 37.0 38.0 52-53 37.2430113047491 38.0 38.0 38.0 37.0 38.0 54-55 37.18000220714305 38.0 38.0 38.0 36.5 38.0 56-57 37.15092795386906 38.0 38.0 38.0 36.0 38.0 58-59 37.15943903319949 38.0 38.0 38.0 36.0 38.0 60-61 37.16858556748333 38.0 38.0 38.0 36.0 38.0 62-63 37.17312534323053 38.0 38.0 38.0 36.0 38.0 64-65 37.17512220215665 38.0 38.0 38.0 36.0 38.0 66-67 37.168672335966434 38.0 38.0 38.0 36.0 38.0 68-69 37.15723730519949 38.0 38.0 38.0 36.0 38.0 70-71 37.14545805355894 38.0 38.0 38.0 36.0 38.0 72-73 37.147118439593996 38.0 38.0 38.0 36.0 38.0 74-75 37.13266926486966 38.0 38.0 38.0 36.0 38.0 76-77 37.12452774356191 38.0 38.0 38.0 36.0 38.0 78-79 37.09642270151788 38.0 38.0 38.0 36.0 38.0 80-81 37.0879850695906 38.0 38.0 38.0 36.0 38.0 82-83 37.03097307247299 38.0 38.0 38.0 36.0 38.0 84-85 37.00859904654628 38.0 38.0 38.0 36.0 38.0 86-87 37.00061907216513 38.0 38.0 38.0 36.0 38.0 88-89 36.980846263236 38.0 38.0 38.0 36.0 38.0 90-91 36.97448278150973 38.0 38.0 38.0 35.0 38.0 92-93 36.97011265440685 38.0 38.0 38.0 35.0 38.0 94-95 36.9700936392822 38.0 38.0 38.0 35.0 38.0 96-97 36.97535974113576 38.0 38.0 38.0 35.0 38.0 98-99 36.95584569599856 38.0 38.0 38.0 35.0 38.0 100 35.399863075712 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 10.0 21 59.0 22 173.0 23 680.0 24 1470.0 25 3096.0 26 5426.0 27 9022.0 28 14095.0 29 20746.0 30 28065.0 31 36968.0 32 48851.0 33 68161.0 34 105925.0 35 206909.0 36 710094.0 37 3374697.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.14005976976772 18.05180765786663 13.258941190432521 22.54919138193313 2 15.057632114731229 20.462114288858654 42.42416330124176 22.056090295168353 3 18.89678386863598 26.28767167625069 29.93431798811078 24.881226467002556 4 13.162079642676044 18.169340482689424 38.338465190044126 30.330114684590402 5 14.293497610288167 37.728425163719535 34.8470260764492 13.131051149543097 6 31.079221914142995 37.28543840153632 18.560498009472536 13.074841674848148 7 27.885034901660394 32.72649397447378 22.47082178036229 16.917649343503545 8 25.296550831274477 36.66191241679164 20.70582269740746 17.335714054526427 9 26.67037080991272 17.520331430914133 20.996989934080634 34.81230782509252 10-11 25.263796135463757 26.78426782034546 28.254949346740176 19.696986697450612 12-13 26.026173548101717 24.35280346103637 28.513858170872485 21.10716481998943 14-15 23.11523481750801 25.659139703740465 26.176946563238356 25.048678915513168 16-17 22.575677804270196 28.76977850661891 26.852927531853833 21.801616157257065 18-19 22.603987528185655 27.938622706038473 28.531368339285134 20.92602142649074 20-21 23.527179739030313 27.099653289050078 28.273578847611176 21.099588124308433 22-23 23.313873133595656 26.901739118238243 28.163088054256953 21.621299693909148 24-25 22.983893069906898 27.121352914798013 28.170716022293075 21.724037993002014 26-27 22.814489822082308 27.275144574043452 28.225899397962472 21.68446620591177 28-29 22.814194331720667 27.31452616013898 28.231413370974025 21.639866137166326 30-31 23.113958388352103 27.076358358689262 28.134448341956347 21.675234911002285 32-33 22.83815823426627 27.31315039599912 28.10857330316011 21.740118066574496 34-35 23.02354817459816 27.280356581580584 28.088899248873346 21.607195994947915 36-37 23.007924945735898 27.22855851101771 28.074041894913066 21.68947464833333 38-39 22.824912027632855 27.390158424508428 28.16483003851964 21.62009950933908 40-41 23.045859427754863 27.241550937637044 28.052430849898393 21.660158784709704 42-43 23.00098140182682 27.350861593533487 27.811290799667738 21.83686620497195 44-45 23.02073352333159 27.399711679914468 27.760703114449374 21.81885168230456 46-47 23.119538756216137 27.435130343172826 27.577748005587345 21.867582895023688 48-49 23.012915354283482 27.513838207560543 27.53160768169316 21.941638756462815 50-51 22.91210207724866 27.736327310217895 27.447065818802507 21.90450479373094 52-53 23.170665928178614 27.57611922036583 27.34886368730946 21.904351164146092 54-55 23.184094450732314 27.441782407094113 27.383008438666117 21.991114703507456 56-57 23.116188029555467 27.57776076639575 27.42007428057174 21.885976923477045 58-59 23.16409971799989 27.595584809951863 27.3583361610027 21.881979311045548 60-61 23.21757354188073 27.544191485013027 27.431614955877713 21.806620017228536 62-63 23.19621444476252 27.706502474496702 27.329487379634188 21.767795701106586 64-65 23.274134459708712 27.630701497863402 27.274456028373763 21.820708014054123 66-67 23.563164771861636 27.679843539011777 27.030734897182285 21.726256791944305 68-69 23.216775454604793 27.680432190104714 27.258948617540646 21.843843737749847 70-71 23.310349069239813 27.567613878536985 27.21821813613083 21.903818916092376 72-73 23.375954267502035 27.548229260143202 27.132658216781763 21.943158255572996 74-75 23.04356050439946 27.483042685671112 27.370024030818907 22.10337277911053 76-77 23.014215746576898 27.451046060436727 27.372075482319975 22.162662710666396 78-79 22.96493138485897 27.463119188896663 27.295335213135285 22.276614213109085 80-81 22.963380598053647 27.45707306129173 27.351137954096473 22.22840838655815 82-83 22.87198546522266 27.378396094209123 27.45840786927311 22.291210571295107 84-85 22.977793821478016 27.39234992759948 27.41110583469087 22.218750416231632 86-87 22.790369429095332 27.422824790804672 27.527008834636664 22.259796945463332 88-89 22.781896120073764 27.388801982429474 27.499270022748647 22.330031874748116 90-91 22.86216776848567 27.368036082648565 27.506872715030127 22.26292343383564 92-93 22.88592471056445 27.39341235180488 27.46050377469091 22.26015916293976 94-95 22.76619558283879 27.45011314455707 27.525360952533855 22.258330320070286 96-97 22.88017444457094 27.570444839494062 27.560680497295465 21.988700218639533 98-99 23.96693706137412 29.533838640447012 27.67507429896017 18.824149999218694 100 30.639284782448716 40.388249487648935 28.972465729902346 0.0 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 676.0 1 633.0 2 668.0 3 822.0 4 1103.5 5 1601.0 6 1979.5 7 2332.5 8 2812.0 9 3242.0 10 3467.0 11 3582.5 12 4058.0 13 5227.0 14 7472.0 15 10107.0 16 12407.5 17 14135.0 18 14698.5 19 14115.0 20 13141.5 21 12479.5 22 13024.0 23 15323.5 24 19235.0 25 24997.5 26 32890.0 27 41921.0 28 50943.0 29 60972.0 30 71292.5 31 81757.0 32 93145.5 33 104669.5 34 115452.5 35 126282.5 36 138596.5 37 149741.0 38 158112.0 39 165371.5 40 173800.0 41 181064.0 42 186012.5 43 191239.0 44 196097.0 45 199894.5 46 202027.0 47 203693.0 48 203855.5 49 201214.0 50 196922.0 51 191603.5 52 184141.5 53 175459.0 54 166666.5 55 155928.0 56 143131.0 57 129945.0 58 116457.0 59 100497.0 60 83798.5 61 68244.5 62 54420.0 63 42376.0 64 32320.0 65 24450.5 66 18219.5 67 13997.5 68 10603.0 69 7651.0 70 5612.0 71 4036.5 72 2824.0 73 1907.5 74 1308.5 75 889.5 76 575.0 77 371.0 78 241.5 79 152.0 80 97.5 81 67.0 82 44.0 83 28.5 84 17.0 85 12.5 86 9.5 87 5.5 88 3.5 89 3.0 90 3.0 91 2.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006796923043726871 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 5.394429345436706E-5 22-23 0.0 24-25 2.3738016887225215E-4 26-27 0.0021690492215541333 28-29 0.0062723350726738005 30-31 0.006507240710508535 32-33 0.0017773286771656939 34-35 4.783738593909192E-4 36-37 0.0 38-39 5.499789523054952E-4 40-41 5.541292269254494E-5 42-43 6.699746291774175E-5 44-45 1.464237684071572E-4 46-47 5.686052999017678E-5 48-49 7.576074984776106E-4 50-51 3.011201205221701E-4 52-53 0.0 54-55 0.007366798919928427 56-57 0.06119400469660426 58-59 0.07403966342124545 60-61 0.04573972405632824 62-63 0.008993150947845209 64-65 8.604658709733885E-5 66-67 0.0 68-69 4.134262815838887E-4 70-71 0.0027081264801366517 72-73 0.012434654167091592 74-75 0.01047625682827454 76-77 0.016846824321498383 78-79 0.006450788187579968 80-81 0.007371400986650047 82-83 0.04206684863358054 84-85 0.025993278162724988 86-87 0.009390510559587938 88-89 0.002386940879915225 90-91 0.0 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 20.0 20-21 119.0 22-23 326.0 24-25 431.0 26-27 1386.0 28-29 3764.0 30-31 11506.0 32-33 13861.0 34-35 18685.0 36-37 30242.0 38-39 34304.0 40-41 33159.0 42-43 37199.0 44-45 42073.0 46-47 41574.0 48-49 39258.0 50-51 35685.0 52-53 33211.0 54-55 35953.0 56-57 36261.0 58-59 37564.0 60-61 36137.0 62-63 35062.0 64-65 37053.0 66-67 38641.0 68-69 39936.0 70-71 39249.0 72-73 37109.0 74-75 37606.0 76-77 39096.0 78-79 39942.0 80-81 40364.0 82-83 38535.0 84-85 37592.0 86-87 38692.0 88-89 39857.0 90-91 40137.0 92-93 40413.0 94-95 46273.0 96-97 142854.0 98-99 1061206.0 100-101 2242115.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.11223762268364 #Duplication Level Percentage of deduplicated Percentage of total 1 91.41132165659852 80.54456095209774 2 6.274098595898971 11.056497326999915 3 1.3732194937335673 3.629923270198602 4 0.47770885781666156 1.6836798557760986 5 0.1954793368234889 0.8612060888257931 6 0.0946635892468402 0.5004612401960221 7 0.05080572359314864 0.3133624192882328 8 0.03134175444307748 0.22092736920001943 9 0.024180555249823918 0.19175425470188237 >10 0.06541453387528225 0.8557513316997967 >50 0.0011950299226975735 0.07275230487912604 >100 5.708727979247405E-4 0.06912358613686913 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.1577533472148797E-5 2 0.0 2.1577533472148797E-5 0.0 0.0 2.1577533472148797E-5 3 0.0 2.1577533472148797E-5 0.0 0.0 2.1577533472148797E-5 4 0.0 6.47326004164464E-5 0.0 2.1577533472148797E-5 2.1577533472148797E-5 5 0.0 6.47326004164464E-5 0.0 2.1577533472148797E-5 2.1577533472148797E-5 6 0.0 6.47326004164464E-5 0.0 2.1577533472148797E-5 2.1577533472148797E-5 7 0.0 6.47326004164464E-5 0.0 2.1577533472148797E-5 4.3155066944297595E-5 8 0.0 6.47326004164464E-5 0.0 2.1577533472148797E-5 4.3155066944297595E-5 9 0.0 8.631013388859519E-5 0.0 2.1577533472148797E-5 4.3155066944297595E-5 10-11 0.0 8.631013388859519E-5 0.0 2.1577533472148797E-5 4.3155066944297595E-5 12-13 0.0 8.631013388859519E-5 0.0 2.1577533472148797E-5 4.3155066944297595E-5 14-15 0.0 1.834090345132648E-4 0.0 2.1577533472148797E-5 4.3155066944297595E-5 16-17 0.0 1.941978012493392E-4 0.0 2.1577533472148797E-5 6.47326004164464E-5 18-19 0.0 2.1577533472148797E-4 0.0 3.23663002082232E-5 6.47326004164464E-5 20-21 0.0 2.3735286819363677E-4 0.0 5.394383368037199E-5 6.47326004164464E-5 22-23 0.0 2.6971916840185997E-4 0.0 6.47326004164464E-5 9.70989006246696E-5 24-25 0.0 3.0208546861008314E-4 0.0 1.4025396756896718E-4 1.294652008328928E-4 26-27 0.0 3.4524053555438076E-4 0.0 1.941978012493392E-4 1.294652008328928E-4 28-29 0.0 3.4524053555438076E-4 0.0 5.718046370119432E-4 1.294652008328928E-4 30-31 0.0 4.962832698594224E-4 0.0 0.0019635555459655406 1.294652008328928E-4 32-33 0.0 4.962832698594224E-4 0.0 0.005070720365954968 1.510427343050416E-4 34-35 0.0 5.502271035397944E-4 0.0 0.009138085425455016 1.7262026777719038E-4 36-37 0.0 5.933821704840921E-4 0.0 0.015460302732794615 1.7262026777719038E-4 38-39 0.0 6.041709372201664E-4 0.0 0.03157872023648977 1.941978012493392E-4 40-41 0.0 6.689035376366127E-4 0.0 0.04955280561878972 2.15775334721488E-4 42-43 0.0 6.796923043726872E-4 0.0 0.060287628521183745 2.2656410145756238E-4 44-45 0.0 7.228473713169847E-4 0.0 0.0718963415291998 2.3735286819363677E-4 46-47 0.0 7.55213671525208E-4 0.0 0.083817928772562 2.3735286819363677E-4 48-49 0.0 7.55213671525208E-4 0.0 0.09622501051904757 2.589304016657856E-4 50-51 0.0 9.062564058302495E-4 0.0 0.10742375039109278 2.589304016657856E-4 52-53 0.0 9.386227060384728E-4 0.0 0.13263709825329867 3.0208546861008314E-4 54-55 0.0 9.602002395106215E-4 0.0 0.1630937867492367 3.4524053555438076E-4 56-57 0.0 9.70989006246696E-4 0.0 0.20197650206604884 3.4524053555438076E-4 58-59 0.0 9.70989006246696E-4 0.0 0.23462331020940996 3.4524053555438076E-4 60-61 0.0 9.70989006246696E-4 0.0 0.2450128925762496 3.4524053555438076E-4 62-63 0.0 9.925665397188448E-4 0.0 0.2571934102212776 3.668180690265296E-4 64-65 0.0 0.0010572991401352912 0.0 0.2637421916300748 3.668180690265296E-4 66-67 0.0 0.0010788766736074399 0.0 0.27016150783803905 3.668180690265296E-4 68-69 0.0 0.0011004542070795888 0.0 0.27631110487760147 3.668180690265296E-4 70-71 0.0 0.0011112429738156632 0.0 0.2816515444119583 3.668180690265296E-4 72-73 0.0 0.001132820507287812 0.0 0.2864957006764557 4.0997313597082715E-4 74-75 0.0 0.0012191306411764072 0.0 0.28975390823075015 4.0997313597082715E-4 76-77 0.0 0.0012299194079124815 0.0 0.2929905382515725 4.207619027069016E-4 78-79 0.0 0.0012299194079124815 0.0 0.2953317006333006 4.31550669442976E-4 80-81 0.0 0.001240708174648556 0.0 0.2960437592378815 4.423394361790504E-4 82-83 0.0 0.0012514969413846304 0.0 0.2966047751081574 4.962832698594224E-4 84-85 0.0 0.0012514969413846304 0.0 0.2967234515422542 4.962832698594224E-4 86-87 0.0 0.0012514969413846304 0.0 0.2967450290757263 5.394383368037199E-4 88 0.0 0.0012514969413846304 0.0 0.2967558178424624 5.394383368037199E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5765 0.0 48.199196 1 GTATCAA 10245 0.0 37.913395 1 TCAACGC 12135 0.0 30.889482 4 ATCAACG 12445 0.0 30.256176 3 CAACGCA 12590 0.0 29.84043 5 TATCAAC 12775 0.0 29.774925 2 AACGCAG 13100 0.0 28.64637 6 ACGCAGA 14970 0.0 25.096258 7 CGCAGAG 15145 0.0 24.778307 8 GTGGTAT 3060 0.0 21.317417 1 GTACATG 16055 0.0 20.789843 1 GCAGAGT 18225 0.0 20.707006 9 TACATGG 16085 0.0 20.593063 2 TGGTATC 2950 0.0 19.671333 2 ACATGGG 16475 0.0 19.25589 3 GAGTACT 8410 0.0 18.60911 12-13 CAGAGTA 17690 0.0 18.388256 10-11 AGAGTAC 16300 0.0 17.890543 10-11 GTACTTT 9265 0.0 16.80047 14-15 CATGGGG 12330 0.0 16.694767 4 >>END_MODULE