##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139389_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5600203 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.36602476731647 30.0 18.0 33.0 18.0 34.0 2 31.52327192424989 32.0 32.0 33.0 27.0 34.0 3 32.3710199433842 33.0 33.0 33.0 31.0 34.0 4 32.76261271243203 33.0 33.0 34.0 31.0 34.0 5 33.099504785808655 33.0 33.0 34.0 33.0 34.0 6 36.362183299426825 38.0 37.0 38.0 34.0 38.0 7 37.06203417983241 38.0 38.0 38.0 35.0 38.0 8 36.572745309411104 38.0 37.0 38.0 34.0 38.0 9 37.17574595063786 38.0 38.0 38.0 36.0 38.0 10-11 37.33118585165573 38.0 38.0 38.0 36.5 38.0 12-13 37.40255478238914 38.0 38.0 38.0 37.0 38.0 14-15 37.36106646491207 38.0 38.0 38.0 36.5 38.0 16-17 37.43491432364148 38.0 38.0 38.0 37.0 38.0 18-19 37.45729601230527 38.0 38.0 38.0 37.0 38.0 20-21 37.4861249291185 38.0 38.0 38.0 37.0 38.0 22-23 37.498550588941725 38.0 38.0 38.0 37.0 38.0 24-25 37.518550739192506 38.0 38.0 38.0 37.0 38.0 26-27 37.48995427733348 38.0 38.0 38.0 37.0 38.0 28-29 37.47607023146676 38.0 38.0 38.0 37.0 38.0 30-31 37.48281511649034 38.0 38.0 38.0 37.0 38.0 32-33 37.46536651530543 38.0 38.0 38.0 37.0 38.0 34-35 37.44700905437409 38.0 38.0 38.0 37.0 38.0 36-37 37.42250585048534 38.0 38.0 38.0 37.0 38.0 38-39 37.421345293957316 38.0 38.0 38.0 37.0 38.0 40-41 37.40918421207613 38.0 38.0 38.0 37.0 38.0 42-43 37.37735819068066 38.0 38.0 38.0 37.0 38.0 44-45 37.34553482205774 38.0 38.0 38.0 37.0 38.0 46-47 37.317332995576436 38.0 38.0 38.0 37.0 38.0 48-49 37.26308832898678 38.0 38.0 38.0 37.0 38.0 50-51 37.186359784051206 38.0 38.0 38.0 37.0 38.0 52-53 37.17546310491939 38.0 38.0 38.0 36.5 38.0 54-55 37.11644955456714 38.0 38.0 38.0 36.5 38.0 56-57 37.0818497168337 38.0 38.0 38.0 36.0 38.0 58-59 37.08615572294498 38.0 38.0 38.0 36.0 38.0 60-61 37.09895231811183 38.0 38.0 38.0 36.0 38.0 62-63 37.10759513890746 38.0 38.0 38.0 36.0 38.0 64-65 37.110588950813494 38.0 38.0 38.0 36.0 38.0 66-67 37.10727257231091 38.0 38.0 38.0 36.0 38.0 68-69 37.09913654772693 38.0 38.0 38.0 36.0 38.0 70-71 37.09039135047148 38.0 38.0 38.0 36.0 38.0 72-73 37.09311610157574 38.0 38.0 38.0 36.0 38.0 74-75 37.082441472166565 38.0 38.0 38.0 36.0 38.0 76-77 37.07446602106117 38.0 38.0 38.0 36.0 38.0 78-79 37.047693101456574 38.0 38.0 38.0 36.0 38.0 80-81 37.039575387287925 38.0 38.0 38.0 36.0 38.0 82-83 36.984764028595336 38.0 38.0 38.0 36.0 38.0 84-85 36.96312818136148 38.0 38.0 38.0 35.5 38.0 86-87 36.955273859045036 38.0 38.0 38.0 35.0 38.0 88-89 36.93341011020006 38.0 38.0 38.0 35.0 38.0 90-91 36.927631395540544 38.0 38.0 38.0 35.0 38.0 92-93 36.92423469424776 38.0 38.0 38.0 35.0 38.0 94-95 36.92787246878415 38.0 38.0 38.0 35.0 38.0 96-97 36.94003284512991 38.0 38.0 38.0 35.0 38.0 98-99 36.92516134690711 38.0 38.0 38.0 35.0 38.0 100 35.31478110556819 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 9.0 21 57.0 22 248.0 23 664.0 24 1696.0 25 3559.0 26 6521.0 27 11739.0 28 19700.0 29 28968.0 30 38392.0 31 48715.0 32 64369.0 33 88360.0 34 136330.0 35 264593.0 36 905099.0 37 3981183.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.23164553142091 17.894226334295382 13.05327681871532 22.820851315568383 2 15.200039286415828 20.04091144484723 42.30613046661548 22.452918802121467 3 18.487561968735776 26.284457902686743 29.966020874600442 25.261959253977047 4 12.868051390279959 18.00034748740358 38.514425280655004 30.617175841661453 5 14.02683081309731 37.4254826119696 35.06437177366607 13.483314801267026 6 30.79145523831904 37.354592324599665 18.517918011186378 13.336034425894919 7 27.54032309185935 32.40950372691847 22.796262921183395 17.253910260038786 8 25.267744758538218 35.89923436703991 20.763425897239795 18.069594977182078 9 26.514895977877945 16.8844057974327 21.038165937913323 35.56253228677603 10-11 25.024664284491116 26.485780961868706 28.356847064293923 20.13270768934626 12-13 25.899070087280762 23.9051066541695 28.371248327962395 21.82457493058734 14-15 23.050289427008273 25.054966757455045 26.35497320364994 25.53977061188675 16-17 22.420937241025012 28.13437298612211 27.016288516684128 22.42840125616875 18-19 22.342324019325726 27.275636258185642 28.860328813080528 21.521710909408107 20-21 23.39413610925625 26.606046921375665 28.523207971635788 21.476608997732292 22-23 23.242974854781018 26.32807802726826 28.321795517171367 22.10715160077936 24-25 22.78553033318636 26.512248335121836 28.51444168296677 22.18777964872504 26-27 22.69928629711719 26.77859761165522 28.464223811165713 22.05789228006187 28-29 22.63282505697895 26.829808277337165 28.51316881582956 22.024197849854325 30-31 22.9819670710037 26.60711603480786 28.290817424254012 22.12009946993443 32-33 22.792973871115635 26.777462113821837 28.26647384164828 22.16309017341424 34-35 22.79479304614973 26.90264589820926 28.258011776609322 22.04454927903169 36-37 22.854872694504984 26.694751745284446 28.232414774634023 22.217960785576548 38-39 22.727686632948917 26.90392447132085 28.356925639230912 22.01146325649932 40-41 22.92145890217433 26.646143811827994 28.41986150565766 22.01253578034001 42-43 22.93793110863006 26.707366738299136 28.052046586007997 22.302655567062803 44-45 22.920687573557743 27.07381475011119 27.835703791001087 22.169793885329984 46-47 23.000691174679172 26.890024158957317 27.572611172439572 22.536673493923942 48-49 22.99089037145283 26.80773059240063 27.690374893494806 22.51100414265173 50-51 22.760411197113932 27.045213768138325 27.67572128600639 22.51865374874136 52-53 23.050980079729392 27.099743354772215 27.34523686968595 22.504039695812438 54-55 23.126513206541414 26.905102220922355 27.359462201628787 22.60892237090744 56-57 23.16488027601513 27.000361024738336 27.44622061907998 22.388538080166555 58-59 23.00872753447828 26.909468438788075 27.687235954501823 22.394568072231827 60-61 23.15293120642526 27.00515153147018 27.423533789438693 22.418383472665866 62-63 23.064087342767166 27.101091907156434 27.37552928448745 22.45929146558895 64-65 22.964284039077203 27.045504333120107 27.446709039992122 22.543502587810565 66-67 23.23452376712955 27.093005360627743 27.15579349098465 22.516677381258067 68-69 23.170703991323293 26.999623108677905 27.452345133125128 22.377327766873673 70-71 23.22890169119556 26.632945488739594 27.443389567555776 22.694763252509066 72-73 23.21265478266533 26.78169203755001 27.395846610961712 22.60980656882295 74-75 22.86311745051179 26.995123209471412 27.48227031198128 22.65948902803552 76-77 22.997388662686117 26.97771141700021 27.344885126283025 22.680014794030644 78-79 23.11336016985296 26.9978227079284 27.235795218520636 22.653021903698004 80-81 22.92633356010332 26.96908448947135 27.263399323998065 22.84118262642726 82-83 23.25087030144761 26.847927115665904 27.400509372219567 22.50069321066692 84-85 23.285096350841226 26.83431839987446 27.166041335628176 22.714543913656136 86-87 22.88799096285887 27.03247250025832 27.36197189844326 22.717564638439555 88-89 23.116854051988387 26.801572837943105 27.33925511065006 22.74231799941845 90-91 23.112871430981073 26.846467300826554 27.302364929629476 22.738296338562893 92-93 23.199490603496695 26.98506350936947 27.197484254061504 22.61796163307233 94-95 22.926456606163498 27.141309489333242 27.207609944606098 22.724623959897166 96-97 22.993008882434395 27.11790556702577 27.397557692400476 22.491527858139364 98-99 24.192846763230673 29.03698495288989 27.450321768420487 19.319846515458945 100 31.312243232338055 40.305989105714914 28.381767661947034 0.0 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 581.0 1 604.5 2 906.0 3 1373.0 4 2000.5 5 3055.0 6 3860.0 7 4540.0 8 5296.0 9 5674.0 10 5779.0 11 6018.0 12 6867.5 13 8620.5 14 12027.5 15 16267.0 16 19897.5 17 22438.5 18 22751.0 19 20926.0 20 18604.0 21 16701.5 22 16602.0 23 19101.0 24 23502.5 25 30108.5 26 40323.0 27 51505.5 28 60022.5 29 69809.5 30 79156.5 31 87646.5 32 100377.0 33 115134.0 34 130008.5 35 145568.5 36 163574.0 37 178074.5 38 184773.5 39 188404.0 40 196005.5 41 203560.0 42 208295.5 43 216234.5 44 225910.0 45 233845.5 46 235691.5 47 240862.5 48 249326.0 49 253510.0 50 254465.0 51 253400.0 52 246932.5 53 234356.0 54 221012.5 55 205903.0 56 190607.5 57 176106.0 58 159630.5 59 137534.5 60 112368.0 61 87838.5 62 66814.0 63 50524.5 64 37432.0 65 27456.5 66 20166.5 67 15141.5 68 11574.5 69 8657.5 70 6315.5 71 4592.0 72 3253.5 73 2326.0 74 1619.5 75 1044.0 76 669.0 77 409.0 78 272.5 79 187.0 80 126.0 81 80.5 82 54.5 83 37.0 84 22.5 85 12.0 86 8.5 87 7.0 88 5.0 89 3.0 90 1.5 91 1.5 92 2.0 93 2.0 94 2.5 95 2.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005410518154431188 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 9.821146213474934E-5 22-23 8.928584980887918E-6 24-25 2.946599316335384E-4 26-27 0.0025450787018705527 28-29 0.006539531737365973 30-31 0.006762796781445462 32-33 0.00212590983558913 34-35 8.190760102537516E-4 36-37 9.045494131826137E-5 38-39 4.1929007809277704E-4 40-41 1.0110676055869391E-4 42-43 1.019524354814866E-4 44-45 1.1229283726100925E-4 46-47 1.891555961777707E-5 48-49 8.123717527828511E-4 50-51 3.2817208726520494E-4 52-53 0.0 54-55 0.007615819166845106 56-57 0.06407159348146702 58-59 0.07625546201040061 60-61 0.04723952320154663 62-63 0.00930400050574545 64-65 5.1544850720957824E-5 66-67 1.0412624182257577E-5 68-69 5.366095556273139E-4 70-71 0.003264811289653632 72-73 0.012927559138210008 74-75 0.011593002255425101 76-77 0.017211390539944027 78-79 0.007176152016409985 80-81 0.00818907657953265 82-83 0.04403055296066612 84-85 0.02774103247329252 86-87 0.009473674201619731 88-89 0.0024631434566418134 90-91 1.1870168841281598E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 20.0 20-21 119.0 22-23 320.0 24-25 474.0 26-27 1631.0 28-29 4660.0 30-31 14904.0 32-33 17776.0 34-35 23840.0 36-37 38953.0 38-39 46948.0 40-41 44263.0 42-43 49423.0 44-45 55765.0 46-47 55932.0 48-49 52891.0 50-51 47416.0 52-53 44958.0 54-55 48377.0 56-57 49740.0 58-59 47949.0 60-61 46785.0 62-63 45242.0 64-65 47518.0 66-67 49869.0 68-69 50204.0 70-71 49670.0 72-73 46631.0 74-75 47644.0 76-77 49570.0 78-79 50797.0 80-81 50802.0 82-83 47437.0 84-85 47667.0 86-87 48789.0 88-89 50205.0 90-91 50954.0 92-93 49861.0 94-95 58119.0 96-97 170265.0 98-99 1278663.0 100-101 2617152.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.22799712363297 #Duplication Level Percentage of deduplicated Percentage of total 1 88.98284612578931 74.05864061409868 2 7.401525858877597 12.320283457863194 3 1.8980938894450141 4.739236583133449 4 0.7725380732250208 2.5718718614507594 5 0.359208395692646 1.494809766174618 6 0.18401554853281146 0.9189147326395546 7 0.12157995514192267 0.7083199309790357 8 0.06963624838034493 0.4636548383919952 9 0.05198810732150295 0.3894179441955453 >10 0.15518443401818074 1.9100824957854856 >50 0.0019457976921649028 0.10582037576451872 >100 0.00129174626274388 0.18280873509890574 >500 7.290981056862645E-5 0.03810790351870019 >1k 7.290981021438261E-5 0.09803076090551133 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.7856495559178836E-5 0.0 5 0.0 0.0 0.0 1.7856495559178836E-5 0.0 6 0.0 0.0 0.0 1.7856495559178836E-5 0.0 7 0.0 0.0 0.0 3.571299111835767E-5 0.0 8 0.0 0.0 0.0 5.356948667753651E-5 0.0 9 0.0 0.0 0.0 1.6070846003260952E-4 0.0 10-11 0.0 0.0 0.0 2.2320619448973545E-4 0.0 12-13 0.0 0.0 0.0 3.124886722856296E-4 0.0 14-15 0.0 3.571299111835767E-5 0.0 3.4820166340398737E-4 0.0 16-17 0.0 3.571299111835767E-5 0.0 3.5712991118357675E-4 0.0 18-19 0.0 3.571299111835767E-5 0.0 3.928429023019344E-4 0.0 20-21 0.0 3.571299111835767E-5 0.0 4.2855589342029207E-4 0.0 22-23 0.0 3.571299111835767E-5 0.0 4.999818756570074E-4 0.0 24-25 0.0 3.571299111835767E-5 0.0 5.624796101141333E-4 0.0 26-27 0.0 3.571299111835767E-5 0.0 6.249773445712592E-4 0.0 28-29 0.0 3.571299111835767E-5 0.0 8.928247779589418E-4 0.0 30-31 0.0 8.928247779589419E-5 0.0 0.001982071007068851 0.0 32-33 0.0 8.928247779589419E-5 0.0 0.0041605634652886695 0.0 34-35 0.0 1.517802122530201E-4 0.0 0.006874750790283852 0.0 36-37 0.0 2.1427794671014604E-4 0.0 0.011115668485588825 0.0 38-39 0.0 2.1427794671014604E-4 0.0 0.018017204019211447 0.0 40-41 0.0 2.499909378285037E-4 0.0 0.025436577924050255 0.0 42-43 0.0 2.499909378285037E-4 0.0 0.032025624785387244 0.0 44-45 0.0 2.499909378285037E-4 0.0 0.039168223009058784 0.0 46-47 0.0 2.499909378285037E-4 0.0 0.0464090319583058 0.0 48-49 0.0 2.499909378285037E-4 0.0 0.053756979880907885 0.0 50-51 0.0 2.857039289468614E-4 0.0 0.0610067170779345 0.0 52-53 0.0 2.857039289468614E-4 0.0 0.06767611816928779 0.0 54-55 0.0 2.946321767264508E-4 0.0 0.07451515596845329 0.0 56-57 0.0 3.2141692006521904E-4 0.0 0.0814166915020759 0.0 58-59 0.0 3.2141692006521904E-4 0.0 0.08845215075239236 0.0 60-61 0.0 3.2141692006521904E-4 0.0 0.0947554936847825 0.0 62-63 0.0 3.392734156243979E-4 0.0 0.10118383208608689 0.0 64-65 0.0 3.749864067427556E-4 0.0 0.10761217048739126 0.0 66-67 0.0 3.749864067427556E-4 0.0 0.11412979136649154 0.0 68-69 0.0 3.83914654522345E-4 0.0 0.11987065468876754 0.0 70-71 0.0 3.928429023019344E-4 0.0 0.12515617737428447 0.0 72-73 0.0 3.928429023019344E-4 0.0 0.12943280806070778 0.0 74-75 0.0 3.928429023019344E-4 0.0 0.1332451698625925 0.0 76-77 0.0 4.1069939786111324E-4 0.0 0.13699503393002005 0.0 78-79 0.0 4.1069939786111324E-4 0.0 0.1395574410427622 0.0 80-81 0.0 4.1069939786111324E-4 0.0 0.14026277261734976 0.0 82-83 0.0 4.1069939786111324E-4 0.0 0.14078953923634555 0.0 84-85 0.0 4.1069939786111324E-4 0.0 0.14103953017417403 0.0 86-87 0.0 4.1069939786111324E-4 0.0 0.1411645256430883 0.0 88 0.0 4.2855589342029207E-4 0.0 0.14117345389086788 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6945 0.0 51.009037 1 GTATCAA 13045 0.0 38.997383 1 ATCAACG 15910 0.0 31.129858 3 CAACGCA 16160 0.0 30.518404 5 TCAACGC 16200 0.0 30.49487 4 TATCAAC 16560 0.0 30.314318 2 AACGCAG 17620 0.0 28.132563 6 ACGCAGA 18625 0.0 26.479324 7 CGCAGAG 20005 0.0 24.631727 8 CTCGATA 715 0.0 21.351336 94 GCAGAGT 23180 0.0 21.27599 9 GTGGTAT 3705 0.0 20.618647 1 TACATGG 18350 0.0 20.609415 2 GAGTACT 12240 0.0 20.52334 12-13 GTACATG 19140 0.0 20.35087 1 ACATGGG 18255 0.0 20.164295 3 CAGAGTA 22445 0.0 18.812376 10-11 AGAGTAC 20895 0.0 18.761597 10-11 CATGGGG 13430 0.0 18.626684 4 TGGTATC 3800 0.0 18.556782 2 >>END_MODULE