##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139388_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8402465 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.365003008045854 30.0 18.0 33.0 18.0 34.0 2 31.51066811941496 32.0 32.0 33.0 27.0 34.0 3 32.35200301340142 33.0 33.0 33.0 30.0 34.0 4 32.743687001374 33.0 33.0 34.0 31.0 34.0 5 33.08799727222904 33.0 33.0 34.0 32.0 34.0 6 36.36628632193053 38.0 37.0 38.0 34.0 38.0 7 37.03872446954554 38.0 38.0 38.0 35.0 38.0 8 36.53685579172303 38.0 37.0 38.0 34.0 38.0 9 37.14559406079049 38.0 38.0 38.0 36.0 38.0 10-11 37.29919017812035 38.0 38.0 38.0 36.5 38.0 12-13 37.378486848799724 38.0 38.0 38.0 37.0 38.0 14-15 37.3310059607508 38.0 38.0 38.0 36.5 38.0 16-17 37.40398942453197 38.0 38.0 38.0 37.0 38.0 18-19 37.423303637682515 38.0 38.0 38.0 37.0 38.0 20-21 37.45502658899975 38.0 38.0 38.0 37.0 38.0 22-23 37.46604653198189 38.0 38.0 38.0 37.0 38.0 24-25 37.484969215073306 38.0 38.0 38.0 37.0 38.0 26-27 37.45455496297666 38.0 38.0 38.0 37.0 38.0 28-29 37.43871510573993 38.0 38.0 38.0 37.0 38.0 30-31 37.448393639998216 38.0 38.0 38.0 37.0 38.0 32-33 37.4271981312631 38.0 38.0 38.0 37.0 38.0 34-35 37.40596906589208 38.0 38.0 38.0 37.0 38.0 36-37 37.38038664153374 38.0 38.0 38.0 37.0 38.0 38-39 37.36238560499962 38.0 38.0 38.0 37.0 38.0 40-41 37.3714340166711 38.0 38.0 38.0 37.0 38.0 42-43 37.33893031337517 38.0 38.0 38.0 37.0 38.0 44-45 37.30794177883817 38.0 38.0 38.0 37.0 38.0 46-47 37.28110632121155 38.0 38.0 38.0 37.0 38.0 48-49 37.22531741391499 38.0 38.0 38.0 37.0 38.0 50-51 37.144596871222305 38.0 38.0 38.0 36.5 38.0 52-53 37.128605494238556 38.0 38.0 38.0 36.0 38.0 54-55 37.06227934914753 38.0 38.0 38.0 36.0 38.0 56-57 37.029018745248166 38.0 38.0 38.0 36.0 38.0 58-59 37.026145579349404 38.0 38.0 38.0 36.0 38.0 60-61 37.03054662744158 38.0 38.0 38.0 36.0 38.0 62-63 37.03401482517121 38.0 38.0 38.0 36.0 38.0 64-65 37.0376422844204 38.0 38.0 38.0 36.0 38.0 66-67 37.02974126636977 38.0 38.0 38.0 36.0 38.0 68-69 37.01626219379048 38.0 38.0 38.0 36.0 38.0 70-71 37.004724197848844 38.0 38.0 38.0 36.0 38.0 72-73 37.00689211988107 38.0 38.0 38.0 36.0 38.0 74-75 36.99145429525181 38.0 38.0 38.0 36.0 38.0 76-77 36.98306400249322 38.0 38.0 38.0 36.0 38.0 78-79 36.95443339601182 38.0 38.0 38.0 36.0 38.0 80-81 36.94612310641724 38.0 38.0 38.0 35.5 38.0 82-83 36.887529123096286 38.0 38.0 38.0 35.0 38.0 84-85 36.86763014792792 38.0 38.0 38.0 35.0 38.0 86-87 36.85669758511601 38.0 38.0 38.0 35.0 38.0 88-89 36.831347631681766 38.0 38.0 38.0 35.0 38.0 90-91 36.825891681437994 38.0 38.0 38.0 35.0 38.0 92-93 36.823483743432895 38.0 38.0 38.0 35.0 38.0 94-95 36.823020590832186 38.0 38.0 38.0 35.0 38.0 96-97 36.8367930259588 38.0 38.0 38.0 35.0 38.0 98-99 36.81950698855185 38.0 38.0 38.0 35.0 38.0 100 35.10806782910311 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 3.0 20 15.0 21 112.0 22 440.0 23 1244.0 24 2936.0 25 6339.0 26 11578.0 27 19618.0 28 31199.0 29 46207.0 30 62850.0 31 81379.0 32 106585.0 33 147229.0 34 226604.0 35 430778.0 36 1371255.0 37 5856092.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.52755649681373 18.108555049024304 13.514260398585416 22.84962805557655 2 14.692419149472519 20.20440167360431 43.09881020987181 22.00436896705136 3 18.465807355341557 26.19564615859751 30.269831531580316 25.06871495448062 4 12.631995491799133 18.525670740669554 38.50990155864975 30.33243220888156 5 13.891649652810218 37.44122706848526 35.3666453832298 13.300477895474721 6 30.186736868288055 37.64279886914137 18.762339384930492 13.408124877640073 7 27.07914879740648 32.67159101525564 22.598844505749206 17.650415681588676 8 24.517198226948878 36.92128440880146 20.98701988047555 17.574497483774106 9 25.756929662902493 17.484833319746052 21.01561863096127 35.742618386390184 10-11 24.50287504916712 26.87166206583425 28.613769887765077 20.01169299723355 12-13 25.428109489298677 24.21143081226759 28.744451776948786 21.616007921484943 14-15 22.50701431068145 25.612472054331676 26.393272688431313 25.487240946555563 16-17 22.12006238645445 28.869653131551274 27.043992447454407 21.966292034539865 18-19 22.11290972351566 27.818711532865652 28.8419410256395 21.226437717979188 20-21 22.84748436692565 26.961331661108318 28.722398587637926 21.468785384328104 22-23 22.581989289863742 27.024902245072504 28.585321300517226 21.80778716454653 24-25 22.41536996809082 27.151507137223053 28.71589497167047 21.71722792301566 26-27 22.314078854479323 27.29355574386106 28.713653935054918 21.678711466604703 28-29 22.068626676969348 27.23327490145351 28.895064703155455 21.803033718421688 30-31 22.475763947905264 26.98998843267481 28.609288816581767 21.924958802838155 32-33 22.427512396171245 27.16131558807341 28.747750899341778 21.66342111641357 34-35 22.48686317869338 27.406746744704208 28.61797618004005 21.48841389656236 36-37 22.30587899006962 27.2591545921062 28.57580287807759 21.85916353974659 38-39 22.13396347219149 27.276316754656083 28.811688560631193 21.77803121252123 40-41 22.437152555236022 27.124427746520624 28.72863540954124 21.70978428870211 42-43 22.50348197180267 27.176249943100046 28.565287085863787 21.754980999233492 44-45 22.33830262490234 27.411214185421134 28.461452064599253 21.789031125077273 46-47 22.60444216533749 27.208278205158592 28.05587970915407 22.131399920349846 48-49 22.49654159387554 27.32653553951417 28.085636210649234 22.091286655961056 50-51 22.317109222001346 27.51279083131625 28.171698402622138 21.99840154406027 52-53 22.55557301712027 27.451414783595652 28.195302839091678 21.797709360192393 54-55 22.480267798953797 27.445216400255575 27.96573974408418 22.108776056706454 56-57 22.676710201808397 27.689352328187873 27.701753903981235 21.932183566022495 58-59 22.39804992524796 27.884348483596327 28.05211062274859 21.665490968407127 60-61 22.642231640565807 28.030492309741273 27.688693565749578 21.638582483943345 62-63 22.400584601163985 28.298667237524946 27.651707735096654 21.64904042621442 64-65 22.40929853124558 28.19963984055336 27.67825613962055 21.712805488580514 66-67 22.62160465625617 28.174350770078515 27.527132077035294 21.676912496630017 68-69 22.475514522502003 28.068412712687667 27.724474370213937 21.731598394596393 70-71 22.618899654021103 27.681900150633638 27.761080426481822 21.93811976886344 72-73 22.679293764434053 27.547409331973384 27.807302228980557 21.96599467461201 74-75 22.467757386974924 27.544535001805272 27.891984422344024 22.09572318887578 76-77 22.48764039501449 27.57019378948527 27.813087450357283 22.129078365142963 78-79 22.511939834502552 27.60973936997943 27.722409537109943 22.15591125840808 80-81 22.478310887047474 27.5616957196939 27.761082378943996 22.198911014314632 82-83 22.54110262953505 27.503306219077622 27.874455032063977 22.08113611932335 84-85 22.642158451430426 27.464195221119002 27.787277923455406 22.10636840399517 86-87 22.397142410295203 27.526841961340793 27.856740046184242 22.219275582179762 88-89 22.51845275091305 27.533374298126073 27.776961804249943 22.17121114671093 90-91 22.562164432046554 27.557598752515872 27.799000752150615 22.081236063286962 92-93 22.594057303634465 27.575198747373953 27.71088915523049 22.119854793761096 94-95 22.43312683920358 27.70705341972989 27.715709637087116 22.144110103979415 96-97 22.54514290383031 27.706890484639434 27.83299392921141 21.914972682318844 98-99 23.60734552870482 29.717419328436083 27.99183905929215 18.68339608356694 100 22.58197815094904 30.561766488606217 21.914661990407 24.941593370037737 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1048.0 1 999.0 2 1291.0 3 1827.5 4 2462.0 5 3645.5 6 4641.0 7 5725.0 8 7173.5 9 8143.0 10 8491.0 11 8694.5 12 9552.0 13 11983.0 14 16860.5 15 22585.0 16 27583.0 17 31200.0 18 31959.0 19 30015.5 20 27198.0 21 25077.0 22 25508.0 23 29145.5 24 35902.5 25 46804.5 26 62107.5 27 78943.5 28 94347.0 29 111095.0 30 127958.5 31 144766.0 32 164348.0 33 185095.5 34 206099.5 35 225576.0 36 248097.5 37 268638.0 38 281572.0 39 293628.5 40 309560.0 41 324530.0 42 334120.5 43 342799.0 44 356224.0 45 377049.0 46 382272.5 47 376583.0 48 373011.5 49 361239.5 50 348554.5 51 336834.5 52 321616.5 53 302989.5 54 283671.5 55 262585.0 56 239410.0 57 214649.0 58 190268.0 59 166097.0 60 139522.0 61 112745.5 62 88658.5 63 68866.0 64 52260.0 65 38669.0 66 28376.5 67 21353.0 68 16281.5 69 11899.5 70 8611.5 71 6334.5 72 4517.0 73 3019.5 74 2060.5 75 1421.0 76 911.5 77 530.0 78 330.0 79 214.0 80 137.0 81 89.5 82 60.0 83 43.5 84 32.5 85 22.5 86 13.5 87 11.0 88 6.5 89 2.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.005700708066025863 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 7.735899255741034E-5 22-23 0.0 24-25 2.737547728549528E-4 26-27 0.002547356578914399 28-29 0.006411972635343972 30-31 0.006626146667492155 32-33 0.0017491040915723448 34-35 6.163339998915731E-4 36-37 7.806660017794381E-5 38-39 5.433589909461299E-4 40-41 7.895344176272669E-5 42-43 1.0387095268360382E-4 44-45 1.2924018586954274E-4 46-47 5.584691442384941E-5 48-49 7.82049450050314E-4 50-51 4.350121481870774E-4 52-53 0.0 54-55 0.007674199533024958 56-57 0.061692485517540786 58-59 0.07360870834747053 60-61 0.04585886580280792 62-63 0.008899047147904939 64-65 6.662705466176842E-5 66-67 0.0 68-69 5.574003770881527E-4 70-71 0.003038428420332063 72-73 0.012153513616941275 74-75 0.010649462896653908 76-77 0.015874085788600792 78-79 0.006613340029131584 80-81 0.00722876044306741 82-83 0.04110834397268236 84-85 0.025964795389901242 86-87 0.008759826454304082 88-89 0.0023214012308384858 90-91 7.5936452124420975E-6 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 45.0 20-21 198.0 22-23 435.0 24-25 619.0 26-27 1823.0 28-29 4878.0 30-31 14706.0 32-33 18294.0 34-35 25676.0 36-37 41392.0 38-39 49737.0 40-41 48400.0 42-43 55889.0 44-45 65641.0 46-47 67070.0 48-49 62265.0 50-51 57339.0 52-53 55018.0 54-55 59730.0 56-57 62434.0 58-59 62302.0 60-61 64441.0 62-63 63348.0 64-65 69416.0 66-67 76373.0 68-69 77367.0 70-71 89592.0 72-73 65153.0 74-75 64428.0 76-77 67736.0 78-79 69393.0 80-81 69750.0 82-83 65346.0 84-85 65616.0 86-87 67716.0 88-89 70370.0 90-91 71445.0 92-93 71587.0 94-95 82353.0 96-97 259714.0 98-99 575679.0 100-101 5541751.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.91530240426856 #Duplication Level Percentage of deduplicated Percentage of total 1 89.85003631184492 76.29643004454822 2 7.053790876787816 11.97949570797816 3 1.688560247562574 4.301538121488076 4 0.6256600790648449 2.125124592642795 5 0.2931805934819246 1.2447759377290277 6 0.16434629715323132 0.8373309313073051 7 0.09288789834701772 0.5521322784483776 8 0.05831026928362694 0.39611473195948116 9 0.0422341834664381 0.3227695614764955 >10 0.12777519622756833 1.6530250097858432 >50 0.0026164546757409847 0.14593734647560277 >100 4.8617678049708E-4 0.0750170259945629 >500 9.233258972075036E-5 0.04572934021896656 >1k 2.308273412160742E-5 0.02457936994710043 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 3.57038083467173E-5 0.0 1.1901269448905767E-5 0.0 3 0.0 3.57038083467173E-5 0.0 2.3802538897811534E-5 0.0 4 0.0 7.14076166934346E-5 0.0 2.3802538897811534E-5 0.0 5 0.0 7.14076166934346E-5 0.0 2.3802538897811534E-5 0.0 6 0.0 7.14076166934346E-5 0.0 2.3802538897811534E-5 0.0 7 0.0 7.14076166934346E-5 0.0 2.3802538897811534E-5 0.0 8 0.0 9.521015559124614E-5 0.0 2.3802538897811534E-5 2.3802538897811534E-5 9 0.0 1.9042031118249227E-4 0.0 7.14076166934346E-5 2.3802538897811534E-5 10-11 0.0 1.9042031118249227E-4 0.0 1.1306205976460479E-4 2.3802538897811534E-5 12-13 0.0 1.9637094590694516E-4 0.0 1.1901269448905767E-4 2.3802538897811534E-5 14-15 0.0 2.7372919732483264E-4 0.0 1.1901269448905767E-4 2.3802538897811534E-5 16-17 0.0 2.856304667737384E-4 0.0 1.428152333868692E-4 2.3802538897811534E-5 18-19 0.0 3.0943300567154994E-4 0.0 1.785190417335865E-4 2.3802538897811534E-5 20-21 0.0 3.332355445693615E-4 0.0 2.0232158063139804E-4 2.3802538897811534E-5 22-23 0.0 3.8084062236498455E-4 0.0 2.142228500803038E-4 2.3802538897811534E-5 24-25 0.0 4.10593795987249E-4 0.0 2.2612411952920957E-4 2.3802538897811534E-5 26-27 0.0 4.343963348850605E-4 0.0 2.856304667737384E-4 2.3802538897811534E-5 28-29 0.0 4.403469696095134E-4 0.0 4.6414950850732497E-4 2.3802538897811534E-5 30-31 0.0 4.8795204740513645E-4 0.0 0.0012734358310329172 2.3802538897811534E-5 32-33 0.0 4.8795204740513645E-4 0.0 0.0028920084760841016 2.3802538897811534E-5 34-35 0.0 5.177052210274008E-4 0.0 0.0047069520670422315 2.3802538897811534E-5 36-37 0.0 5.593596640985711E-4 0.0 0.007723923872339843 2.3802538897811534E-5 38-39 0.0 5.593596640985711E-4 0.0 0.013031890046551815 2.3802538897811534E-5 40-41 0.0 6.188660113430999E-4 0.0 0.01797686750257216 2.3802538897811534E-5 42-43 0.0 6.367179155164586E-4 0.0 0.023278883042059682 2.3802538897811534E-5 44-45 0.0 6.843229933120817E-4 0.0 0.02860470112044501 2.9753173622264418E-5 46-47 0.0 7.14076166934346E-4 0.0 0.0345672371143468 3.57038083467173E-5 48-49 0.0 7.259774363832518E-4 0.0 0.04079160103612452 4.760507779562307E-5 50-51 0.0 8.152369572500451E-4 0.0 0.04660537116191499 4.760507779562307E-5 52-53 0.0 8.21187591974498E-4 0.0 0.05227632605431859 5.355571252007595E-5 54-55 0.0 8.271382266989509E-4 0.0 0.057935379677273274 5.9506347244528835E-5 56-57 0.0 8.449901308723095E-4 0.0 0.06410023725180647 5.9506347244528835E-5 58-59 0.0 8.509407655967623E-4 0.0 0.07030674926941083 5.9506347244528835E-5 60-61 0.0 8.68792669770121E-4 0.0 0.07612647002992574 6.545698196898172E-5 62-63 0.0 8.925952086679326E-4 0.0 0.08191643761681841 8.330888614234037E-5 64-65 0.0 9.878053642591786E-4 0.0 0.08834907375395196 8.330888614234037E-5 66-67 0.0 9.997066337080844E-4 0.0 0.0940021767421822 8.330888614234037E-5 68-69 0.0 0.0010592129809526133 0.0 0.09948866195812776 8.330888614234037E-5 70-71 0.0 0.0011127686934726893 0.0 0.10432652798910796 8.330888614234037E-5 72-73 0.0 0.0011187193281971422 0.0 0.10839676214063373 9.521015559124614E-5 74-75 0.0 0.0011425218670949536 0.0 0.11141373394593135 9.521015559124614E-5 76-77 0.0 0.0011722750407172182 0.0 0.1146508792360337 9.521015559124614E-5 78-79 0.0 0.0011782256754416709 0.0 0.11688236725770354 9.521015559124614E-5 80-81 0.0 0.0011782256754416709 0.0 0.11764404850243351 9.521015559124614E-5 82-83 0.0 0.0011782256754416709 0.0 0.11816175372346091 9.521015559124614E-5 84-85 0.0 0.0011782256754416709 0.0 0.11847713736385691 9.521015559124614E-5 86-87 0.0 0.0011901269448905767 0.0 0.11864970577086605 9.521015559124614E-5 88 0.0 0.0012377320226861998 0.0 0.1186675576750394 9.521015559124614E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10895 0.0 48.800533 1 GTATCAA 19395 0.0 37.389862 1 CTTATAC 7290 0.0 35.585686 1 TCAACGC 22530 0.0 31.443684 4 ATCAACG 22690 0.0 31.316282 3 CAACGCA 23120 0.0 30.6783 5 TATCAAC 23745 0.0 30.1796 2 AACGCAG 24175 0.0 29.445734 6 TATACAC 10570 0.0 29.319746 3 ACGCAGA 27475 0.0 25.893452 7 CGCAGAG 28020 0.0 25.405088 8 TTATACA 11550 0.0 25.017967 2 GTGGTAT 5370 0.0 24.951706 1 TGGTATC 5155 0.0 24.331516 2 ACACATC 12340 0.0 22.755444 6 ACATCTC 12445 0.0 22.219498 8 TACACAT 14010 0.0 21.845627 5 GCAGAGT 33480 0.0 21.210825 9 GTACATG 25735 0.0 20.576702 1 TACATGG 25150 0.0 20.408516 2 >>END_MODULE