##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139386_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6122747 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.723648225216557 30.0 18.0 33.0 18.0 34.0 2 31.607033248311584 33.0 32.0 33.0 27.0 34.0 3 32.38844623173226 33.0 33.0 33.0 31.0 34.0 4 32.819334524193145 33.0 33.0 34.0 31.0 34.0 5 33.10029975107578 33.0 33.0 34.0 32.0 34.0 6 36.275779809291485 38.0 36.0 38.0 33.0 38.0 7 37.015853831621655 38.0 38.0 38.0 35.0 38.0 8 36.557472487430886 38.0 37.0 38.0 34.0 38.0 9 37.14632223085488 38.0 38.0 38.0 36.0 38.0 10-11 37.31752030583658 38.0 38.0 38.0 36.5 38.0 12-13 37.38571191982945 38.0 38.0 38.0 37.0 38.0 14-15 37.36424606471572 38.0 38.0 38.0 36.5 38.0 16-17 37.43021906670323 38.0 38.0 38.0 37.0 38.0 18-19 37.44814410917191 38.0 38.0 38.0 37.0 38.0 20-21 37.478484666820336 38.0 38.0 38.0 37.0 38.0 22-23 37.493503542555935 38.0 38.0 38.0 37.0 38.0 24-25 37.51262106840245 38.0 38.0 38.0 37.0 38.0 26-27 37.47765772263526 38.0 38.0 38.0 37.0 38.0 28-29 37.451326026932236 38.0 38.0 38.0 37.0 38.0 30-31 37.46755864203442 38.0 38.0 38.0 37.0 38.0 32-33 37.44740344758591 38.0 38.0 38.0 37.0 38.0 34-35 37.420259104631725 38.0 38.0 38.0 37.0 38.0 36-37 37.38864963266187 38.0 38.0 38.0 37.0 38.0 38-39 37.3661217403035 38.0 38.0 38.0 37.0 38.0 40-41 37.40063793149514 38.0 38.0 38.0 37.0 38.0 42-43 37.37929648887696 38.0 38.0 38.0 37.0 38.0 44-45 37.35321157079471 38.0 38.0 38.0 37.0 38.0 46-47 37.3344970714773 38.0 38.0 38.0 37.0 38.0 48-49 37.288969992733925 38.0 38.0 38.0 37.0 38.0 50-51 37.21692462701371 38.0 38.0 38.0 37.0 38.0 52-53 37.207217335457344 38.0 38.0 38.0 37.0 38.0 54-55 37.14892146678371 38.0 38.0 38.0 36.5 38.0 56-57 37.12275104103941 38.0 38.0 38.0 36.0 38.0 58-59 37.122903146015744 38.0 38.0 38.0 36.0 38.0 60-61 37.12432533641672 38.0 38.0 38.0 36.0 38.0 62-63 37.13223016384508 38.0 38.0 38.0 36.0 38.0 64-65 37.13629346157809 38.0 38.0 38.0 36.0 38.0 66-67 37.131830997836786 38.0 38.0 38.0 36.0 38.0 68-69 37.12192192937369 38.0 38.0 38.0 36.0 38.0 70-71 37.11443134657003 38.0 38.0 38.0 36.0 38.0 72-73 37.117343543440086 38.0 38.0 38.0 36.0 38.0 74-75 37.10840140433084 38.0 38.0 38.0 36.0 38.0 76-77 37.105223291649146 38.0 38.0 38.0 36.0 38.0 78-79 37.08356089516755 38.0 38.0 38.0 36.0 38.0 80-81 37.0782113329623 38.0 38.0 38.0 36.0 38.0 82-83 37.02785100959997 38.0 38.0 38.0 36.0 38.0 84-85 37.00925502719318 38.0 38.0 38.0 36.0 38.0 86-87 37.0044519861428 38.0 38.0 38.0 36.0 38.0 88-89 36.98047344137665 38.0 38.0 38.0 36.0 38.0 90-91 36.981957174193965 38.0 38.0 38.0 36.0 38.0 92-93 36.981339703865885 38.0 38.0 38.0 36.0 38.0 94-95 36.98254460740178 38.0 38.0 38.0 35.5 38.0 96-97 36.99795346463931 38.0 38.0 38.0 35.5 38.0 98-99 36.98143202621107 38.0 38.0 38.0 35.0 38.0 100 35.422002972042094 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 2.0 20 22.0 21 73.0 22 286.0 23 859.0 24 2025.0 25 4355.0 26 7891.0 27 13587.0 28 21240.0 29 31374.0 30 42245.0 31 55059.0 32 71357.0 33 97964.0 34 149629.0 35 289227.0 36 934237.0 37 4401314.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.14130667166224 18.241191412939322 13.109164889550392 23.50833702584804 2 14.721798911205955 19.769403025299027 43.02696504784912 22.481833015645904 3 18.47139854055704 25.873582560246245 30.32085108203883 25.334167817157887 4 12.61342335392921 18.203103933577527 38.194473820329335 30.988998892163927 5 13.885205447816151 37.36371925869222 35.34799004433794 13.40308524915369 6 30.63417449716606 37.403782975190715 18.319946912717445 13.642095614925784 7 27.14053022279052 32.60190238139841 22.179930021606314 18.07763737420475 8 24.868331159200274 36.533781323971084 20.73570898813882 17.862178528689817 9 25.68819191777808 17.316459425810017 20.72197332341186 36.27337533300004 10-11 24.628398005013107 26.569454854169216 28.453225325168592 20.34892181564909 12-13 25.526638614987686 23.791461577621938 28.406702089764615 22.275197717625765 14-15 22.660523127935875 25.299134522461898 25.999596259652733 26.040746089949497 16-17 22.510892578118938 28.61595457071801 26.59587273490151 22.27728011626154 18-19 22.37360942727178 27.435838848151 28.294767038389796 21.895784686187426 20-21 23.172875669946 26.683886752484 28.24105234704652 21.902185230523486 22-23 22.880989682693162 26.8194445170361 27.991550222391798 22.308015577878944 24-25 22.808690347171236 26.998805167101015 28.20130688421391 21.991197601513836 26-27 22.735132484317205 27.221716447083296 28.144502416639533 21.898648651959967 28-29 22.247782148702232 27.018620726450422 28.35909112115152 22.374506003695828 30-31 22.922751456015334 26.681470784015804 28.476020928022717 21.919756831946145 32-33 22.473213756886565 27.24420470062921 28.143661803604985 22.13891973887924 34-35 22.47816495726601 27.336229481341523 28.48525382762459 21.700351733767878 36-37 22.837285479066573 26.964463853087278 28.146609831595075 22.05164083625107 38-39 22.415894928849863 26.890437707274984 28.473101809089123 22.220565554786035 40-41 22.727224632887033 26.786805836216594 28.471955099566248 22.01401443133013 42-43 22.94842939031828 26.668796356152686 28.36326547099016 22.01950878253887 44-45 22.623326489350955 27.211028096894996 28.081190766859915 22.084454646894137 46-47 22.959520474265794 26.765451059188557 27.599982069925083 22.675046396620573 48-49 22.817384690379548 26.647173128305685 27.95917622011221 22.57626596120256 50-51 22.412671384165588 27.18199871089691 27.989946619593592 22.41538328534391 52-53 22.71627707987953 27.17835340071591 28.027213901211347 22.07815561819321 54-55 22.763278336755384 27.08917218256852 27.706814247380308 22.440735233295786 56-57 22.974463753659492 27.423382123011862 27.358047868995282 22.24410625433336 58-59 22.573997765305847 27.78166820968672 27.93502974756358 21.70930427744385 60-61 22.95987707231785 28.14162532726713 27.08996356867247 21.808534031742553 62-63 22.550908898788315 28.471651472099946 27.119582977075098 21.85785665203665 64-65 22.52899238818807 28.404690512072744 27.12334189441078 21.942975205328406 66-67 22.799526666257094 28.341180718254805 26.89128249349618 21.96801012199192 68-69 22.753924839262798 28.041540479348825 27.25251360658222 21.952021074806154 70-71 22.87748211668317 27.436932953165694 27.33726699053301 22.34831793961813 72-73 23.03162727516835 27.25840628247292 27.420972496710526 22.288993945648205 74-75 22.65050609566386 27.369686729638403 27.538860201221187 22.440946973476546 76-77 22.749277111170226 27.28745830406084 27.434078280308817 22.52918630446012 78-79 22.867296246142217 27.347066511305663 27.317434417711155 22.468202824840965 80-81 22.812983634398336 27.228261323281355 27.38033098531918 22.57842405700113 82-83 22.89884354731167 27.24021732069602 27.482867265319662 22.37807186667265 84-85 23.113273607729536 27.17163669543367 27.290302875410237 22.42478682142655 86-87 22.711126752782253 27.272729132862583 27.462315053721635 22.55382906063353 88-89 22.86735458818995 27.198697657405575 27.437240033912158 22.496707720492314 90-91 22.866397523810537 27.243858736235723 27.405298503277926 22.484445236675814 92-93 22.99520701444439 27.23870102334437 27.37823215189379 22.38785981031745 94-95 22.75048674067095 27.46334415192646 27.374301735580296 22.41186737182229 96-97 22.78026386827783 27.452608892317183 27.546044089015503 22.221083150389486 98-99 23.98126192139682 29.38095118178853 27.591990578253263 19.045796318561393 100 22.91879011426853 30.285520189124547 21.461384511785848 25.334305184821083 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 482.0 1 498.0 2 748.0 3 1099.0 4 1583.5 5 2437.0 6 3042.5 7 3538.0 8 4242.5 9 4751.5 10 5069.5 11 5370.5 12 6126.5 13 7831.5 14 11024.0 15 14826.5 16 18118.0 17 20734.5 18 21376.5 19 19924.0 20 18062.5 21 16713.0 22 17194.0 23 20026.0 24 24801.0 25 32384.5 26 43279.5 27 55973.5 28 66043.0 29 76150.0 30 85508.0 31 94259.0 32 107424.0 33 122095.0 34 137771.5 35 152989.0 36 171176.5 37 187949.0 38 194866.5 39 201460.0 40 214912.5 41 226550.0 42 235376.5 43 251759.5 44 273283.0 45 285133.0 46 281429.5 47 273656.5 48 267475.0 49 263076.0 50 260966.0 51 257324.0 52 247094.0 53 233093.0 54 219085.0 55 202983.0 56 186429.5 57 170006.5 58 154539.5 59 137356.0 60 114261.5 61 90315.5 62 70203.0 63 53186.5 64 39631.0 65 28873.5 66 20912.0 67 15925.0 68 11875.5 69 8500.5 70 6133.0 71 4301.5 72 2943.0 73 1972.5 74 1269.0 75 837.0 76 546.0 77 322.5 78 187.0 79 119.0 80 84.5 81 56.0 82 37.0 83 24.0 84 14.0 85 9.5 86 7.5 87 5.0 88 3.0 89 2.5 90 3.0 91 3.0 92 2.5 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.006157366946568264 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 4.083167590755545E-5 22-23 0.0 24-25 3.348461026894594E-4 26-27 0.0030302027908086027 28-29 0.006682990702064514 30-31 0.007179386036568424 32-33 0.0022363865498306245 34-35 7.143835461210944E-4 36-37 2.471901483849502E-5 38-39 5.881134810519776E-4 40-41 9.164433599679546E-5 42-43 9.218217242038456E-5 44-45 1.3501734846348991E-4 46-47 1.7011453386278648E-5 48-49 7.372820559950291E-4 50-51 3.7137362293796953E-4 52-53 0.0 54-55 0.00812574805260056 56-57 0.0626110262640726 58-59 0.07402258920753674 60-61 0.04577175557918406 62-63 0.009298143196113141 64-65 1.0046416269787558E-4 66-67 9.224619957188539E-6 68-69 6.531713990800734E-4 70-71 0.002891523913422482 72-73 0.013074809446138246 74-75 0.01170573520178244 76-77 0.017582337041510594 78-79 0.006298022420959819 80-81 0.00707574264490465 82-83 0.042913187204363414 84-85 0.02617874776026832 86-87 0.009442085287093099 88-89 0.0021801673789924444 90-91 2.088482966698408E-5 92-93 0.0 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 30.0 20-21 121.0 22-23 313.0 24-25 388.0 26-27 1249.0 28-29 3386.0 30-31 10616.0 32-33 13516.0 34-35 18126.0 36-37 29708.0 38-39 35467.0 40-41 34167.0 42-43 39067.0 44-45 46225.0 46-47 47039.0 48-49 43883.0 50-51 39824.0 52-53 38936.0 54-55 42646.0 56-57 45122.0 58-59 45699.0 60-61 52474.0 62-63 48063.0 64-65 52477.0 66-67 60298.0 68-69 61613.0 70-71 76023.0 72-73 48039.0 74-75 46141.0 76-77 48663.0 78-79 49602.0 80-81 49800.0 82-83 47175.0 84-85 47121.0 86-87 48331.0 88-89 50308.0 90-91 51148.0 92-93 49932.0 94-95 59332.0 96-97 188159.0 98-99 416238.0 100-101 4036282.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.42215430742385 #Duplication Level Percentage of deduplicated Percentage of total 1 89.4753963722144 74.64230322880783 2 7.116779452191476 11.873941472652415 3 1.7909192766509332 4.482070327467421 4 0.7105176076960522 2.3709163802944686 5 0.3458930655208141 1.4427572342872612 6 0.1737162507101463 0.8695070323469372 7 0.10549824439260508 0.616062357601755 8 0.06673345484271358 0.44536388538850835 9 0.043110368711671176 0.3236723847823473 >10 0.1648027511371656 2.194188615361281 >50 0.004472465963609008 0.257847825329242 >100 0.0019166817635665133 0.26580249784660703 >500 1.7429157527413242E-4 0.10535523620621157 >1k 6.971662959106275E-5 0.1102115216276669 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.633253831980972E-5 0.0 2 0.0 0.0 0.0 1.633253831980972E-5 0.0 3 0.0 0.0 0.0 1.633253831980972E-5 0.0 4 0.0 0.0 0.0 1.633253831980972E-5 0.0 5 0.0 0.0 0.0 1.633253831980972E-5 0.0 6 0.0 0.0 0.0 1.633253831980972E-5 0.0 7 0.0 0.0 0.0 3.266507663961944E-5 0.0 8 0.0 0.0 0.0 3.266507663961944E-5 0.0 9 0.0 0.0 0.0 8.16626915990486E-5 0.0 10-11 0.0 1.633253831980972E-5 0.0 8.16626915990486E-5 0.0 12-13 0.0 1.633253831980972E-5 0.0 8.16626915990486E-5 0.0 14-15 1.633253831980972E-5 1.633253831980972E-5 0.0 8.16626915990486E-5 0.0 16-17 6.533015327923888E-5 1.633253831980972E-5 0.0 8.16626915990486E-5 0.0 18-19 8.16626915990486E-5 1.633253831980972E-5 0.0 8.982896075895345E-5 0.0 20-21 8.16626915990486E-5 1.633253831980972E-5 0.0 9.799522991885831E-5 0.0 22-23 8.16626915990486E-5 1.633253831980972E-5 0.0 1.1432776823866804E-4 0.0 24-25 8.982896075895345E-5 1.633253831980972E-5 0.0 1.1432776823866804E-4 0.0 26-27 1.1432776823866804E-4 1.633253831980972E-5 0.0 1.3882657571838262E-4 0.0 28-29 1.1432776823866804E-4 1.633253831980972E-5 0.0 3.021519589164798E-4 0.0 30-31 1.3066030655847777E-4 1.633253831980972E-5 0.0 0.001396432026343731 0.0 32-33 1.633253831980972E-4 1.633253831980972E-5 0.0 0.003617657237837853 0.0 34-35 1.796579215179069E-4 1.633253831980972E-5 0.0 0.005928711410090928 0.0 36-37 1.796579215179069E-4 1.633253831980972E-5 0.0 0.009709694031126878 0.0 38-39 1.796579215179069E-4 1.633253831980972E-5 0.0 0.0152872558673419 0.0 40-41 1.796579215179069E-4 1.633253831980972E-5 0.0 0.021289463699871967 0.0 42-43 1.796579215179069E-4 1.633253831980972E-5 0.0 0.02700585211180537 0.0 44-45 1.8782419067781177E-4 1.633253831980972E-5 0.0 0.03341637340233068 0.0 46-47 1.9599045983771662E-4 1.633253831980972E-5 0.0 0.040692519223805915 0.0 48-49 1.9599045983771662E-4 1.633253831980972E-5 0.0 0.04792783369948162 0.0 50-51 1.9599045983771662E-4 1.633253831980972E-5 0.0 0.05442001768160598 0.0 52-53 1.9599045983771662E-4 1.633253831980972E-5 0.0 0.060667213588933205 0.0 54-55 2.0415672899762148E-4 1.633253831980972E-5 0.0 0.0670532360719788 0.0 56-57 2.6132061311695553E-4 1.633253831980972E-5 0.0 0.07383940574385975 0.0 58-59 3.103182280763847E-4 1.633253831980972E-5 0.0 0.08064190795406048 0.0 60-61 3.266507663961944E-4 1.633253831980972E-5 0.0 0.08701976416794618 0.0 62-63 3.266507663961944E-4 1.633253831980972E-5 0.0 0.0925891597350013 0.0 64-65 3.266507663961944E-4 1.633253831980972E-5 0.0 0.09840354337685356 0.0 66-67 3.3481703555609925E-4 1.633253831980972E-5 0.0 0.10393210759810914 0.0 68-69 3.429833047160041E-4 1.633253831980972E-5 0.0 0.10907685716884921 0.0 70-71 3.429833047160041E-4 1.633253831980972E-5 0.0 0.11340497982359879 0.0 72-73 3.429833047160041E-4 1.633253831980972E-5 0.0 0.11730845648203331 0.0 74-75 3.593158430358138E-4 1.633253831980972E-5 0.0 0.12066479310675421 0.0 76-77 3.593158430358138E-4 1.633253831980972E-5 0.0 0.12415179003803357 0.0 78-79 3.593158430358138E-4 1.633253831980972E-5 0.0 0.12632401763456827 0.0 80-81 3.593158430358138E-4 1.633253831980972E-5 0.0 0.12707531439727954 0.0 82-83 3.593158430358138E-4 1.633253831980972E-5 0.0 0.127548958008554 0.0 84-85 3.593158430358138E-4 1.633253831980972E-5 0.0 0.12763878696931297 0.0 86-87 3.593158430358138E-4 1.633253831980972E-5 0.0 0.1277122833917521 0.0 88 3.593158430358138E-4 1.633253831980972E-5 0.0 0.12773678219923182 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTATAC 7010 0.0 48.453754 1 GGTATCA 6975 0.0 46.24365 1 TATACAC 9350 0.0 40.351265 3 GTATCAA 12875 0.0 39.472458 1 TTATACA 10410 0.0 34.76519 2 ATCAACG 14875 0.0 33.15679 3 TCAACGC 15225 0.0 32.394566 4 CAACGCA 15265 0.0 32.309677 5 TATCAAC 15690 0.0 31.654415 2 AACGCAG 15945 0.0 31.065918 6 TACACAT 12570 0.0 29.912573 5 ACACATC 12385 0.0 28.977844 6 ACATCTC 12420 0.0 28.655096 8 ACGCAGA 17885 0.0 27.672255 7 ATACACA 14590 0.0 26.88526 4 CGCAGAG 18855 0.0 26.225964 8 CACATCT 13855 0.0 25.718084 7 CATCTCC 15345 0.0 22.858465 9 GCAGAGT 22245 0.0 22.286978 9 GTGGTAT 3995 0.0 22.272629 1 >>END_MODULE