##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139383_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7852839 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.19460910888406 33.0 31.0 34.0 31.0 34.0 2 32.41485913565782 34.0 31.0 34.0 31.0 34.0 3 32.466323962582194 34.0 31.0 34.0 31.0 34.0 4 36.09473847611036 37.0 35.0 37.0 35.0 37.0 5 35.96031498926694 37.0 35.0 37.0 35.0 37.0 6 35.981667394428946 37.0 35.0 37.0 35.0 37.0 7 35.93899913139694 37.0 35.0 37.0 35.0 37.0 8 35.93545901042922 37.0 35.0 37.0 35.0 37.0 9 37.715956738703035 39.0 37.0 39.0 35.0 39.0 10-11 37.60223869354765 39.0 37.0 39.0 35.0 39.0 12-13 37.57431719916835 39.0 37.0 39.0 35.0 39.0 14-15 38.85866258050115 40.0 38.0 41.0 35.0 41.0 16-17 38.84612679567224 40.0 38.0 41.0 35.0 41.0 18-19 38.83426223305992 40.0 38.0 41.0 35.0 41.0 20-21 38.82633580768325 40.0 38.0 41.0 34.5 41.0 22-23 38.753005746962344 40.0 38.0 41.0 34.0 41.0 24-25 38.69923653483133 40.0 38.0 41.0 34.0 41.0 26-27 38.53939420306565 40.0 38.0 41.0 34.0 41.0 28-29 38.41122050289936 40.0 38.0 41.0 34.0 41.0 30-31 38.283372432311964 40.0 38.0 41.0 34.0 41.0 32-33 38.19887892546878 40.0 38.0 41.0 34.0 41.0 34-35 38.261334641768855 40.0 38.0 41.0 34.0 41.0 36-37 38.22907032268714 40.0 38.0 41.0 34.0 41.0 38-39 38.172471229757846 40.0 38.0 41.0 33.0 41.0 40-41 38.11436167204863 40.0 38.0 41.0 33.0 41.0 42-43 38.091451207911774 40.0 38.0 41.0 33.0 41.0 44-45 38.13089491866634 40.0 38.0 41.0 33.0 41.0 46-47 38.130098590538324 40.0 38.0 41.0 33.0 41.0 48-49 38.06703048269375 40.0 38.0 41.0 33.0 41.0 50-51 38.00901313604278 40.0 37.0 41.0 33.0 41.0 52-53 37.809773822428 40.0 37.0 41.0 33.0 41.0 54-55 37.717064096347244 40.0 37.0 41.0 32.0 41.0 56-57 37.67950350952039 40.0 37.0 41.0 32.0 41.0 58-59 37.551917709308526 39.5 36.0 41.0 32.0 41.0 60-61 37.39776195080227 39.0 36.0 41.0 32.0 41.0 62-63 37.18461038106304 39.0 36.0 41.0 31.0 41.0 64-65 36.922458697877204 39.0 35.0 40.0 31.0 41.0 66-67 36.67102659937707 38.0 35.0 40.0 31.0 41.0 68-69 36.405423174373524 38.0 35.0 40.0 31.0 41.0 70-71 36.11732721045604 37.0 35.0 40.0 30.0 41.0 72-73 35.80482601007518 37.0 34.0 39.0 30.0 41.0 74-75 35.44603088638756 36.0 34.0 39.0 30.0 40.5 76-77 34.05653702085397 35.0 32.5 37.5 28.5 39.0 78-79 34.76519159418767 35.0 34.0 37.5 29.5 39.0 80-81 34.67608052359866 35.0 34.0 37.0 30.0 39.0 82-83 34.347510918658955 35.0 34.0 37.0 29.5 39.0 84-85 34.11537717411349 35.0 34.0 36.0 29.0 38.0 86-87 33.83496308929824 35.0 33.5 36.0 29.0 37.0 88-89 33.683662212450656 35.0 33.0 36.0 29.0 37.0 90-91 33.470218315019565 35.0 33.0 35.0 29.0 36.5 92-93 33.33993317976771 35.0 33.0 35.0 29.0 36.0 94-95 33.30955857833459 35.0 33.0 35.0 29.0 36.0 96-97 33.326267455722835 35.0 33.0 35.0 29.0 36.0 98-99 33.41099646317854 35.0 33.0 35.0 30.0 35.0 100 32.145215395540916 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 1.0 19 2.0 20 18.0 21 163.0 22 937.0 23 3313.0 24 9226.0 25 20088.0 26 37936.0 27 61731.0 28 90155.0 29 122117.0 30 157995.0 31 197456.0 32 245328.0 33 311776.0 34 411999.0 35 558468.0 36 851022.0 37 1530088.0 38 2228693.0 39 984998.0 40 29328.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.104438662246864 21.37309831514437 15.07174666384985 23.450716358758918 2 13.73285508591224 22.107558807712728 42.59116989409817 21.56841621227686 3 17.292650466920307 27.20754876039099 31.55689299118446 23.942907781504243 4 11.537572589989429 19.351447291864766 41.27572206688562 27.835258051260187 5 12.105469117601928 38.83269477446309 36.873390629809165 12.188445478125809 6 27.766467643103343 40.14135524744618 19.951485061644586 12.140692047805896 7 24.962093327012052 33.64314485500085 24.463725793945347 16.931036024041752 8 23.181718102204822 37.64875352722754 22.315751029659463 16.853777340908174 9 24.91707776003048 17.39821738354753 22.227948389111248 35.45675646731074 10-11 22.776215073300243 27.808433357668484 30.403978739408764 19.011372829622513 12-13 23.85805311938778 25.318639539152656 30.229035639212775 20.594271702246793 14-15 20.92699213621978 26.91463558593268 28.092992865382826 24.065379412464715 16-17 20.35881849969778 29.943524840264445 28.78646440107659 20.91119225896118 18-19 20.271330052861806 29.249928799594592 30.45383167058977 20.02490947695383 20-21 21.267325731553175 28.519040945787253 30.28399991060275 19.929633412056823 22-23 20.7374885077275 28.46690585325311 30.055678098048244 20.73992754097114 24-25 20.609610300107704 28.49241052405632 30.25891670270694 20.639062473129034 26-27 20.671234819782168 28.730464735046567 29.986320264602327 20.61198018056894 28-29 20.505817177375768 28.9728369812828 30.02165445768144 20.49969138365999 30-31 20.926542615533844 28.64582615799171 30.03472992907063 20.392901297403814 32-33 20.738381287346797 28.76671817170976 29.84806225153755 20.646838289405892 34-35 20.772359276229952 28.893361849899296 29.884135296172865 20.450143577697887 36-37 20.79003899383059 28.80245615044941 29.867987105428078 20.539517750291928 38-39 20.621087333829703 28.94506636141515 29.90727586610972 20.52657043864543 40-41 21.01350649313795 28.831115208124626 29.687409807675053 20.46796849106237 42-43 20.866813818262727 28.82985599943222 29.56892948832766 20.734400693977392 44-45 20.96865252403599 29.105156168519176 29.329433058119335 20.596758249325504 46-47 20.8887637577204 28.971360276587006 29.080738792219822 21.05913717347277 48-49 20.954905381960376 28.999390902187734 29.23061650974126 20.815087206110636 50-51 20.940192967521597 29.11950555822747 29.0550755575574 20.88522591669353 52-53 20.994370589613442 29.15230141785926 28.922800249983695 20.9305277425436 54-55 21.103607482457264 28.99392562513429 28.98661705455278 20.915849837855664 56-57 21.107206788212977 29.115397613016984 28.848232180439055 20.929163418330983 58-59 21.05240969655633 29.192393817845584 28.989653825817214 20.765542659780873 60-61 21.08875509487503 29.181730431611836 28.912582905330947 20.81693156818219 62-63 21.020404199124247 29.132144403712296 28.906564541078712 20.94088685608475 64-65 20.957276142700568 29.113098354769534 28.93548083823451 20.994144664295384 66-67 21.108977281756886 29.195730390832793 28.720793682876145 20.97449864453418 68-69 21.12332161274454 29.175302532313403 28.78711187672663 20.914263978215434 70-71 21.023911485385664 28.85176476415847 28.94942882733136 21.17489492312451 72-73 21.025363395656882 28.908769707797816 28.984726598969957 21.08114029757534 74-75 20.976593848689134 29.005878657832717 28.82713349094206 21.19039400253609 76-77 20.967523508548453 29.005562075740915 28.830994948076068 21.195919467634564 78-79 21.073045134683362 29.032405182956317 28.78180450956635 21.112745172793968 80-81 20.979713570649096 28.931819158126 28.805459001356233 21.283008269868674 82-83 21.110825153992522 28.897737776480486 28.947687597198 21.043749472328987 84-85 21.321545574349297 28.865766209724512 28.783379015787645 21.029309200138545 86-87 20.964162967285816 28.93701363258039 28.870183472955723 21.22863992717807 88-89 21.147661913648307 28.89703019880388 28.853528124121315 21.1017797634265 90-91 21.15267099278063 28.826115258276065 28.953215202644166 21.06799854629914 92-93 21.140417693195275 28.805624205145268 28.96278754536667 21.091170556292788 94-95 20.940027082431886 28.978900646027373 28.95607687279145 21.12499539874929 96-97 20.8990226201029 29.152164359119325 29.10210682953679 20.846706191240987 98-99 21.07358642067366 29.818007638623833 28.254128741059414 20.854277199643093 100 19.420453553306295 29.806380160084917 29.172238060831717 21.600928225777068 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 818.0 1 787.0 2 1383.0 3 2201.5 4 3203.0 5 5292.5 6 7015.5 7 8025.5 8 8559.0 9 8395.5 10 7886.5 11 7461.5 12 8273.5 13 11272.0 14 18048.0 15 27653.5 16 36034.5 17 41443.5 18 43549.5 19 42584.5 20 39920.0 21 37137.5 22 36080.0 23 38837.0 24 45838.0 25 57328.0 26 74292.5 27 93487.5 28 112661.5 29 134399.5 30 155859.0 31 176710.0 32 199985.5 33 223544.0 34 248099.0 35 270063.5 36 291826.5 37 309874.0 38 319542.0 39 327027.0 40 337424.0 41 346693.5 42 348099.5 43 346068.5 44 341453.5 45 336726.0 46 331594.0 47 323462.0 48 310915.5 49 294132.0 50 275200.5 51 251335.5 52 224118.5 53 199069.5 54 175795.0 55 151375.0 56 128590.0 57 109448.5 58 92451.5 59 77167.5 60 61867.5 61 46364.0 62 32971.5 63 23342.5 64 16661.5 65 11877.5 66 8479.5 67 6206.0 68 4716.0 69 3499.0 70 2557.0 71 1773.0 72 1195.0 73 833.5 74 579.0 75 403.5 76 276.5 77 180.0 78 125.5 79 90.5 80 66.5 81 54.0 82 37.0 83 24.0 84 20.0 85 15.5 86 10.5 87 8.0 88 5.0 89 2.0 90 0.5 91 0.0 92 0.0 93 0.0 94 0.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0012033864440618228 18-19 5.730411638389633E-5 20-21 0.0 22-23 0.006883586015915411 24-25 0.008152186027790038 26-27 0.021081005147931767 28-29 0.015978055189617514 30-31 0.001887876465527886 32-33 0.0064302665687120605 34-35 0.03281667483619165 36-37 0.005422548919755826 38-39 0.002763951414362147 40-41 0.007480868484977738 42-43 0.00753055881991287 44-45 0.008558212014441055 46-47 0.0052157081423224744 48-49 0.0010064912766808997 50-51 0.0025110549192821395 52-53 9.421740666588152E-4 54-55 0.005396192087117191 56-57 0.0010639928815530334 58-59 0.0014455764989333999 60-61 9.122645453655306E-4 62-63 0.001480570902706796 64-65 4.3695834660423624E-4 66-67 0.005480214057985197 68-69 0.003959844002878454 70-71 0.0016696811368190987 72-73 0.001540968144055866 74-75 7.617524651508827E-4 76-77 6.607772232222695E-4 78-79 9.09262217477194E-4 80-81 9.818770760653675E-4 82-83 0.006737709071112477 84-85 6.762643276153715E-4 86-87 6.68226902235954E-5 88-89 4.5799351090767854E-4 90-91 3.118540675087994E-4 92-93 0.0025464025928860147 94-95 0.00317858815119657 96-97 5.627148063288373E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 170.0 20-21 441.0 22-23 1091.0 24-25 2157.0 26-27 2835.0 28-29 4655.0 30-31 8591.0 32-33 11742.0 34-35 15742.0 36-37 20524.0 38-39 25037.0 40-41 28605.0 42-43 38224.0 44-45 42161.0 46-47 41006.0 48-49 35238.0 50-51 31387.0 52-53 30010.0 54-55 32609.0 56-57 35131.0 58-59 36845.0 60-61 37144.0 62-63 38167.0 64-65 41547.0 66-67 44971.0 68-69 47639.0 70-71 48723.0 72-73 48830.0 74-75 51859.0 76-77 51928.0 78-79 57190.0 80-81 60963.0 82-83 61875.0 84-85 65802.0 86-87 72550.0 88-89 83008.0 90-91 91789.0 92-93 104099.0 94-95 128649.0 96-97 309854.0 98-99 143639.0 100-101 5818412.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.34023169755423 #Duplication Level Percentage of deduplicated Percentage of total 1 88.78122060439362 74.87828716166233 2 7.9216763043684955 13.362320298869278 3 1.931201236046918 4.886338791084004 4 0.6824574209080219 2.302344680123914 5 0.30157975071571413 1.2717653025326987 6 0.1385137552413482 0.7009369326212174 7 0.083252355288777 0.49150660540957886 8 0.045111837129124775 0.30437942366181703 9 0.029769659795013434 0.22597020042019175 >10 0.08166611427125434 1.004824789192039 >50 0.0018622015138391173 0.1119328366631141 >100 0.001385581314284761 0.21563190110146033 >500 2.0989441734014694E-4 0.11243042148171575 >1k 9.328459627839008E-5 0.1313306551764839 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.2734248085310294E-5 0.0 3 0.0 0.0 0.0 2.546849617062059E-5 0.0 4 0.0 0.0 0.0 2.546849617062059E-5 0.0 5 0.0 0.0 0.0 3.820274425593088E-5 0.0 6 0.0 0.0 0.0 3.820274425593088E-5 0.0 7 0.0 0.0 0.0 5.093699234124118E-5 0.0 8 0.0 0.0 0.0 6.367124042655146E-5 0.0 9 0.0 0.0 0.0 8.913973659717205E-5 0.0 10-11 0.0 0.0 0.0 1.2734248085310293E-4 0.0 12-13 0.0 0.0 0.0 1.2734248085310293E-4 0.0 14-15 0.0 0.0 0.0 1.2734248085310293E-4 0.0 16-17 0.0 0.0 0.0 1.3370960489575808E-4 0.0 18-19 0.0 0.0 0.0 1.655452251090338E-4 0.0 20-21 0.0 0.0 0.0 1.910137212796544E-4 0.0 22-23 0.0 0.0 0.0 2.992548300047919E-4 0.0 24-25 0.0 0.0 0.0 4.4569868298586026E-4 0.0 26-27 1.2734248085310294E-5 0.0 0.0 0.0011015124593793404 0.0 28-29 1.2734248085310294E-5 0.0 0.0 0.0036228935802707783 0.0 30-31 1.2734248085310294E-5 1.2734248085310294E-5 0.0 0.00389667991410495 0.0 32-33 1.2734248085310294E-5 1.2734248085310294E-5 0.0 0.0045270251943278095 0.0 34-35 1.2734248085310294E-5 1.2734248085310294E-5 0.0 0.005494828048811392 0.0 36-37 1.2734248085310294E-5 1.2734248085310294E-5 0.0 0.006959266578622075 0.0 38-39 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.011218872563158368 0.0 40-41 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.015414807307268111 0.0 42-43 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.018732078933491443 0.0 44-45 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.023551991833781385 0.0 46-47 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.028352803361943367 0.0 48-49 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.03320455188244659 0.0 50-51 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.037884388053798124 0.0 52-53 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.048956816763975425 0.0 54-55 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.0626716019518546 0.0 56-57 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.07741786123464392 0.0 58-59 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.09115174779465107 0.0 60-61 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.09785632941156695 0.0 62-63 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.10564968923977686 0.0 64-65 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.10987745960409986 0.0 66-67 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.11320109835436586 0.0 68-69 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.11646743298824794 0.0 70-71 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.11946634841233852 0.0 72-73 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.12187312130046217 0.0 74-75 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.12398700648262367 0.0 76-77 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.12611999303691313 0.0 78-79 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.12760990006289447 0.0 80-81 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.12810653573822156 0.0 82-83 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.12856496866929273 0.0 84-85 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.1287241467703591 0.0 86-87 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.1288514892512122 0.0 88 2.546849617062059E-5 1.2734248085310294E-5 0.0 0.12885785637525485 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9615 0.0 46.65589 1 GTATCAA 16590 0.0 35.956257 1 ATCAACG 18420 0.0 31.332472 3 TCAACGC 18660 0.0 30.953075 4 CAACGCA 18990 0.0 30.36882 5 AACGCAG 19795 0.0 29.222776 6 TATCAAC 20300 0.0 28.821098 2 CGCAGAG 22330 0.0 25.96442 8 ACGCAGA 22345 0.0 25.907589 7 GCAGAGT 27200 0.0 21.153793 9 GAGTACT 17645 0.0 19.460897 12-13 TACATGG 18755 0.0 19.365046 2 GTGGTAT 4710 0.0 19.254309 1 GTACATG 20320 0.0 18.6102 1 AGAGTAC 24880 0.0 18.57043 10-11 ACATGGG 18970 0.0 18.565397 3 CAGAGTA 27495 0.0 18.237272 10-11 GTACTTT 19485 0.0 17.589897 14-15 GTGTAGC 6105 0.0 17.522747 1 TGGTATC 4820 0.0 16.988205 2 >>END_MODULE