##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139382_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 18655884 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.429394822566437 31.0 31.0 34.0 28.0 34.0 2 31.797100421507768 33.0 31.0 34.0 30.0 34.0 3 31.912428164754886 33.0 31.0 34.0 30.0 34.0 4 35.47747091480629 37.0 35.0 37.0 33.0 37.0 5 35.55006854673839 37.0 35.0 37.0 33.0 37.0 6 35.5163050970943 37.0 35.0 37.0 33.0 37.0 7 35.52804943469846 37.0 35.0 37.0 33.0 37.0 8 35.63570351316507 37.0 35.0 37.0 33.0 37.0 9 37.44364973538644 39.0 37.0 39.0 34.0 39.0 10-11 37.50246201144904 39.0 37.0 39.0 34.5 39.0 12-13 37.46588175612584 39.0 37.0 39.0 34.5 39.0 14-15 38.75911811522842 40.0 38.0 41.0 34.0 41.0 16-17 38.773455924147044 40.0 38.0 41.0 34.5 41.0 18-19 38.826485386594385 40.0 38.0 41.0 35.0 41.0 20-21 38.84908295812477 40.0 38.0 41.0 34.5 41.0 22-23 38.80169592088434 40.0 38.0 41.0 34.0 41.0 24-25 38.7647590113674 40.0 38.0 41.0 34.0 41.0 26-27 38.676676103990175 40.0 38.0 41.0 34.0 41.0 28-29 38.60940175550661 40.0 38.0 41.0 34.0 41.0 30-31 38.525328095376814 40.0 38.0 41.0 34.0 41.0 32-33 38.4398935199321 40.0 38.0 41.0 34.0 41.0 34-35 38.37271832719925 40.0 38.0 41.0 34.0 41.0 36-37 38.318439057651744 40.0 38.0 41.0 34.0 41.0 38-39 38.27442907171152 40.0 38.0 41.0 34.0 41.0 40-41 38.220131484355804 40.0 38.0 41.0 33.0 41.0 42-43 38.15945487221714 40.0 38.0 41.0 33.0 41.0 44-45 38.078292337839386 40.0 37.5 41.0 33.0 41.0 46-47 37.992529722660244 40.0 37.0 41.0 33.0 41.0 48-49 37.91501474818321 40.0 37.0 41.0 33.0 41.0 50-51 37.82165670323231 40.0 37.0 41.0 33.0 41.0 52-53 37.70544499934154 40.0 37.0 41.0 32.5 41.0 54-55 37.567729909143736 39.5 36.0 41.0 32.0 41.0 56-57 37.38254413683728 39.0 36.0 41.0 32.0 41.0 58-59 37.21520035538419 39.0 35.5 41.0 31.5 41.0 60-61 37.002294887079124 39.0 35.0 40.5 31.0 41.0 62-63 36.760697174030284 38.0 35.0 40.0 31.0 41.0 64-65 36.500551140049154 38.0 35.0 40.0 31.0 41.0 66-67 36.21487499401112 37.0 35.0 40.0 31.0 41.0 68-69 35.928659845247005 37.0 34.0 39.5 30.0 41.0 70-71 35.60434753807463 36.0 34.0 39.0 30.0 41.0 72-73 35.269662863124 36.0 34.0 39.0 30.0 40.0 74-75 34.93560945159155 35.0 34.0 38.0 29.5 40.0 76-77 34.622307093817696 35.0 34.0 37.0 29.0 39.0 78-79 34.3102971501157 35.0 33.5 37.0 29.0 39.0 80-81 34.024764353418774 35.0 33.0 36.0 29.0 39.0 82-83 33.77237150984094 35.0 33.0 36.0 29.0 37.5 84-85 33.53767388305856 35.0 33.0 35.5 29.0 37.0 86-87 33.456321325722996 35.0 33.0 35.0 29.0 37.0 88-89 33.48631441710059 35.0 33.0 35.0 29.0 36.0 90-91 33.41127730527791 35.0 33.0 35.0 29.0 36.0 92-93 33.33480994488059 35.0 33.0 35.0 29.0 36.0 94-95 33.29972510619296 35.0 33.0 35.0 29.0 36.0 96-97 33.326654990045824 35.0 33.0 35.0 29.0 35.0 98-99 33.39029905098319 35.0 33.0 35.0 29.5 35.0 100 33.00784981808744 34.0 32.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 2.0 16 6.0 17 126.0 18 1241.0 19 4465.0 20 9466.0 21 16229.0 22 24976.0 23 38667.0 24 58877.0 25 87161.0 26 122976.0 27 165261.0 28 214186.0 29 269400.0 30 337121.0 31 420848.0 32 535348.0 33 702549.0 34 974598.0 35 1401032.0 36 2225730.0 37 3868115.0 38 4767878.0 39 2308915.0 40 100710.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.454616463095505 18.835703523885545 10.905213604458517 27.80446640856043 2 14.532283531759996 21.861531531970975 38.4000444257598 25.20614051050923 3 17.891708472449942 26.703623749183418 29.15531725125972 26.24935052710692 4 12.301421899921761 18.637583724255574 37.8820322853637 31.178962090458967 5 13.359264206075697 38.44087251826304 34.59832946487836 13.601533810782895 6 29.564912647082377 38.893770923227656 18.21571227928062 13.325604150409347 7 26.400919945685768 33.52134908214481 22.461422894782153 17.616308077387274 8 25.143638328797497 36.69775712584834 20.33296840825125 17.82563613710291 9 26.398700806673116 16.60726985652355 20.37778000763727 36.61624932916607 10-11 24.38512696584091 26.883679165243525 28.37371576710061 20.357478101814955 12-13 25.38909172033874 24.497008557729025 28.597977453118812 21.51592226881342 14-15 22.55064943585627 25.459876358579415 26.364095102649653 25.625379102914664 16-17 21.901181418152042 28.512631725197263 27.03631197535319 22.549874881297505 18-19 21.95957854369163 27.66641076884912 28.862869751977442 21.511140935481805 20-21 22.889338885887746 26.775893747092518 28.719590720947146 21.61517664607259 22-23 22.546717744775417 26.704989106477406 28.604611733836748 22.143681414910425 24-25 22.233697196039962 26.840384506745725 28.72958916465712 22.196329132557192 26-27 22.23907632227209 26.95911323156959 28.652483012297104 22.149327433861217 28-29 22.210351980674094 26.928798081600775 28.708768097205773 22.152081840519358 30-31 22.442993232374103 26.825599436903207 28.611448680182683 22.119958650540003 32-33 22.22102043575255 27.012365070098436 28.597972468144896 22.168642026004118 34-35 22.36759596662687 26.9921685391584 28.574263782394986 22.065971711819746 36-37 22.398036404487424 26.888148519579623 28.538255063803007 22.175560012129942 38-39 22.27488290101626 27.039618715864417 28.578627690629848 22.106870692489473 40-41 22.49944975619967 26.89457845498137 28.45139736639355 22.15457442242541 42-43 22.358875423583555 26.99675826538797 28.287126868894276 22.3572394421342 44-45 22.442733151079334 27.177438550001586 28.042108742901107 22.337719556017976 46-47 22.581686750304026 27.181070383591887 27.67183610660002 22.56540675950407 48-49 22.520215028760347 27.309487822928318 27.597891253285667 22.57240589502567 50-51 22.509359335460697 27.48357054158118 27.471405623419326 22.5356644995388 52-53 22.693427621654948 27.336379499330032 27.372999552582257 22.597193326432762 54-55 22.609680497509192 27.21428644037885 27.490797268859556 22.6852357932524 56-57 22.56917654093128 27.34926666382392 27.491995824390692 22.58956097085411 58-59 22.619149888079644 27.364136309372306 27.42958341867726 22.587130383870786 60-61 22.672904083310087 27.33427411715742 27.438164099152253 22.554657700380243 62-63 22.6009033095377 27.4760190962753 27.419111738601604 22.503965855585395 64-65 22.612447795507002 27.373934300437046 27.35651308865589 22.657104815400057 66-67 22.61864767387452 27.480892026702207 27.222620739930075 22.677839559493197 68-69 22.57865952907846 27.4356232615325 27.298956680268294 22.686760529120747 70-71 22.60272072611875 27.204340709395037 27.35207264179654 22.840865922689677 72-73 22.643353883752244 27.283146715892848 27.27500878776655 22.798490612588363 74-75 22.481324525486638 27.41751281690064 27.296936964311097 22.804225693301625 76-77 22.635710468309185 27.3230521704781 27.232119406142257 22.809117955070455 78-79 22.609210446034332 27.35276510341048 27.199139525862048 22.838884924693136 80-81 22.607258863766102 27.44374703937597 27.136049860138982 22.812944236718945 82-83 22.66865421711645 27.37328018280561 27.22104910109651 22.737016498981426 84-85 22.66402164507185 27.37539200177847 27.24258503928348 22.718001313866207 86-87 22.546614142167392 27.4097100074842 27.352859126807218 22.69081672354119 88-89 22.57714017929298 27.366819663888855 27.270666408900844 22.785373747917323 90-91 22.61796484680099 27.390681435302895 27.3141465317028 22.677207186193318 92-93 22.600230128914074 27.40038898752854 27.32060539836565 22.678775485191736 94-95 22.47121232194805 27.43136490103239 27.381526903025122 22.715895873994437 96-97 22.55572583338356 27.550196777891234 27.42966176679964 22.464415621925575 98-99 23.595678724621198 29.510191936301045 27.580952462384428 19.313176876693326 100 22.718825545133434 30.37458801519041 21.31324747125128 25.593338968424874 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 8347.0 1 7365.0 2 4728.0 3 3139.5 4 3608.5 5 6418.0 6 10818.5 7 16683.5 8 23816.0 9 27309.5 10 25559.5 11 22636.5 12 24061.5 13 31973.5 14 52369.0 15 81291.0 16 104923.0 17 118466.0 18 120839.5 19 112696.0 20 97478.5 21 81009.0 22 70554.5 23 71437.5 24 82891.0 25 103300.5 26 131955.5 27 165338.0 28 199643.5 29 237498.5 30 274981.0 31 312626.5 32 355653.5 33 397306.5 34 439958.0 35 480613.5 36 522828.0 37 564130.5 38 597844.0 39 627340.0 40 655827.5 41 681742.0 42 702489.5 43 725711.5 44 749042.5 45 773405.5 46 788851.5 47 795468.5 48 801289.0 49 795068.0 50 783145.0 51 768392.5 52 741643.0 53 704657.5 54 663829.0 55 620380.0 56 575053.5 57 525182.5 58 471636.5 59 415231.5 60 352029.0 61 288175.0 62 230023.5 63 180210.5 64 137335.0 65 101955.0 66 75922.5 67 58394.5 68 45172.0 69 33814.5 70 24937.0 71 18503.5 72 13435.5 73 9337.0 74 6548.5 75 4585.0 76 3145.0 77 2089.0 78 1428.5 79 987.0 80 669.5 81 450.5 82 314.0 83 234.0 84 176.5 85 126.0 86 92.0 87 72.5 88 52.5 89 33.0 90 22.0 91 16.0 92 14.0 93 10.5 94 6.5 95 5.5 96 5.5 97 6.5 98 8.0 99 29.0 100 52.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.1976980560127842E-4 3 0.001988648728733519 4 0.0 5 0.09853727649678783 6 9.755635273032357E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 2.144629583465485E-5 22-23 1.555697803555869E-4 24-25 1.5297158576947742E-4 26-27 5.021830595822476E-4 28-29 1.6395169381048223E-4 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 3.666028110370344E-5 48-49 0.0 50-51 0.0 52-53 2.8923506984477388E-6 54-55 0.0 56-57 0.0 58-59 0.0 60-61 2.3867660030721257E-5 62-63 3.008415440511743E-4 64-65 0.001012991955448735 66-67 0.0 68-69 0.0 70-71 0.0 72-73 7.395200955145274E-4 74-75 1.6513732565944414E-4 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0010648423161987086 84-85 1.4370495434527021E-4 86-87 0.0 88-89 0.0 90-91 0.0 92-93 4.2794267855145326E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2852.0 20-21 9340.0 22-23 10293.0 24-25 11390.0 26-27 14366.0 28-29 21065.0 30-31 38640.0 32-33 46953.0 34-35 62545.0 36-37 94615.0 38-39 120683.0 40-41 126807.0 42-43 145089.0 44-45 176646.0 46-47 171982.0 48-49 152796.0 50-51 133046.0 52-53 119564.0 54-55 126301.0 56-57 134688.0 58-59 140646.0 60-61 141817.0 62-63 134263.0 64-65 137341.0 66-67 146577.0 68-69 153700.0 70-71 156477.0 72-73 145491.0 74-75 142652.0 76-77 150244.0 78-79 160447.0 80-81 166569.0 82-83 159905.0 84-85 156322.0 86-87 161475.0 88-89 179252.0 90-91 197455.0 92-93 211223.0 94-95 253827.0 96-97 653305.0 98-99 1188613.0 100-101 1.1998622E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 80.45183893714183 #Duplication Level Percentage of deduplicated Percentage of total 1 87.49801070321786 70.39375864415594 2 8.193279312116578 13.18328775170838 3 2.210892889508405 5.336111959620068 4 0.8978128407775583 2.8892277624773546 5 0.43111261724147765 1.734190142304051 6 0.23734652658493638 1.145697871746081 7 0.15216938851453404 0.8569614995154256 8 0.08790400357689226 0.565763099015846 9 0.06583581605619046 0.4766951222683137 >10 0.21731533867224073 2.678425974103147 >50 0.005796515268645251 0.31307087218340424 >100 0.0023912317940940515 0.31769071641012103 >500 1.0331142861343587E-4 0.05907991390571548 >1k 2.9505241992337006E-5 0.050038670586065 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.36023916100679E-6 2 0.0 2.680119580503395E-5 0.0 0.0 5.36023916100679E-6 3 5.36023916100679E-6 2.680119580503395E-5 0.0 0.0 5.36023916100679E-6 4 5.36023916100679E-6 1.0184454405912902E-4 0.0 0.0 5.36023916100679E-6 5 5.36023916100679E-6 1.125650223811426E-4 0.0 0.0 5.36023916100679E-6 6 5.896263077107469E-5 1.125650223811426E-4 0.0 0.0 5.36023916100679E-6 7 5.896263077107469E-5 1.2328550070315618E-4 0.0 5.36023916100679E-6 5.36023916100679E-6 8 6.432286993208149E-5 1.554469356691969E-4 0.0 1.072047832201358E-5 5.36023916100679E-6 9 6.432286993208149E-5 3.216143496604074E-4 0.0 1.072047832201358E-5 2.144095664402716E-5 10-11 8.844394615661204E-5 3.242944692409108E-4 0.0 1.072047832201358E-5 2.144095664402716E-5 12-13 9.648430489812222E-5 3.269745888214142E-4 0.0 1.6080717483020372E-5 2.4121076224530555E-5 14-15 9.648430489812222E-5 4.5294020910507373E-4 0.0 2.144095664402716E-5 3.4841554546544136E-5 16-17 1.527668160886935E-4 4.6098056784658393E-4 0.0 2.4121076224530555E-5 3.752167412704753E-5 18-19 1.608071748302037E-4 4.824215244906111E-4 0.0 3.2161434966040744E-5 4.556203286855771E-5 20-21 1.608071748302037E-4 5.226233181981621E-4 0.0 3.2161434966040744E-5 5.092227202956451E-5 22-23 1.7152765315221727E-4 6.217877426767876E-4 0.0 3.752167412704753E-5 6.164275035157809E-5 24-25 1.9832884895725123E-4 6.753901342868556E-4 0.0 6.700298951258487E-5 7.504334825409506E-5 26-27 2.090493272792648E-4 7.021913300918895E-4 0.0 1.4204633776667994E-4 7.504334825409506E-5 28-29 2.090493272792648E-4 7.048714496723929E-4 0.0 6.459088189013182E-4 7.772346783459845E-5 30-31 2.090493272792648E-4 7.825949175069913E-4 0.0 0.0022620209259448655 8.040358741510185E-5 32-33 2.117294468597682E-4 8.013557545705151E-4 0.0 0.005513005977095484 8.040358741510185E-5 34-35 2.2781016434278857E-4 8.897997007271272E-4 0.0 0.009699352761841785 8.576382657610864E-5 36-37 2.3585052308429876E-4 9.728834077227324E-4 0.0 0.016825790726400315 8.576382657610864E-5 38-39 2.3585052308429876E-4 0.0010157653210107868 0.0 0.034262648717155404 9.112406573711543E-5 40-41 2.3585052308429876E-4 0.0011470911804554531 0.0 0.05339602240236914 9.648430489812222E-5 42-43 2.3585052308429876E-4 0.001192653213324011 0.0 0.06677249922866159 9.916442447862562E-5 44-45 2.3853064266480216E-4 0.001337379670671194 0.0 0.08221534825152216 1.0452466363963241E-4 46-47 2.4121076224530556E-4 0.0014338639755693164 0.0 0.09752419129535754 1.098849028006392E-4 48-49 2.4121076224530556E-4 0.0014392242147303232 0.0 0.11261326453359166 1.125650223811426E-4 50-51 2.4121076224530556E-4 0.0016241524657850575 0.0 0.1275710119123811 1.1524514196164598E-4 52-53 2.4121076224530556E-4 0.001634872944107071 0.0 0.15719705375526563 1.2864573986416298E-4 54-55 2.4121076224530556E-4 0.0016509536615900914 0.0 0.190628865402465 1.3936621818617654E-4 56-57 2.4121076224530556E-4 0.0016991958140391524 0.0 0.22306099244613656 1.4204633776667994E-4 58-59 2.4121076224530556E-4 0.0017018759336196558 0.0 0.24531938556221727 1.4472645734718334E-4 60-61 2.5461136014782255E-4 0.001723316890263683 0.0 0.25673133473600074 1.500866965081901E-4 62-63 2.840926755333599E-4 0.0017447578469077102 0.0 0.2694243810692648 1.554469356691969E-4 64-65 2.840926755333599E-4 0.0018010403580982816 0.0 0.27580842591002386 1.554469356691969E-4 66-67 2.974932734358768E-4 0.0018090807168397918 0.0 0.28048791469758283 1.608071748302037E-4 68-69 3.001733930163802E-4 0.0018358819126448257 0.0 0.2852263661159128 1.715276531522173E-4 70-71 3.082137517578904E-4 0.0018573228692888527 0.0 0.28960300139087486 1.8224813147423087E-4 72-73 3.269745888214142E-4 0.0018760837063523765 0.0 0.2928861478769915 2.090493272792648E-4 74-75 3.269745888214142E-4 0.0019350463371234513 0.0 0.2955099849463043 2.090493272792648E-4 76-77 3.376950671434278E-4 0.002082452914051138 0.0 0.2979917756778505 2.090493272792648E-4 78-79 3.4841554546544135E-4 0.002165536621046743 0.0 0.2995006830016739 2.090493272792648E-4 80-81 3.4841554546544135E-4 0.002165536621046743 0.0 0.29999918524364755 2.17089686020775E-4 82-83 3.5109566504594475E-4 0.0021789372189492603 0.0 0.3004816067681381 2.2781016434278857E-4 84-85 3.5377578462644814E-4 0.0022030582951737907 0.0 0.30066921513877337 2.3049028392329197E-4 86-87 3.5645590420695154E-4 0.002224499251817818 0.0 0.30074961872618844 2.3049028392329197E-4 88 3.5913602378745494E-4 0.002390666665809028 0.0 0.30075765908492996 2.3585052308429876E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 26970 0.0 51.448235 1 GTATCAA 49065 0.0 37.825172 1 TCAACGC 59840 0.0 30.288607 4 ATCAACG 60280 0.0 30.096312 3 CAACGCA 61490 0.0 29.489689 5 TATCAAC 62425 0.0 29.34836 2 AACGCAG 63715 0.0 28.45894 6 ACGCAGA 73580 0.0 24.61426 7 CGCAGAG 74505 0.0 24.308668 8 GTACATG 62365 0.0 21.30775 1 TACATGG 61725 0.0 20.846434 2 GCAGAGT 86380 0.0 20.809437 9 GAGTACT 48880 0.0 19.934528 12-13 ACATGGG 63450 0.0 19.756773 3 CAGAGTA 83910 0.0 18.684734 10-11 AGAGTAC 78070 0.0 18.408676 10-11 GTACTTT 53440 0.0 18.122501 14-15 CATGGGG 43695 0.0 17.551867 4 GTGGTAT 12375 0.0 16.980452 1 AGTACTT 53200 0.0 16.977846 12-13 >>END_MODULE