##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139380_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 18646662 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.45879680770746 31.0 31.0 34.0 28.0 34.0 2 31.82456645591581 33.0 31.0 34.0 30.0 34.0 3 31.933387916829297 33.0 31.0 34.0 30.0 34.0 4 35.489542417833285 37.0 35.0 37.0 33.0 37.0 5 35.56093305064467 37.0 35.0 37.0 33.0 37.0 6 35.52896668583364 37.0 35.0 37.0 33.0 37.0 7 35.541155837972504 37.0 35.0 37.0 33.0 37.0 8 35.650122633209094 37.0 35.0 37.0 33.0 37.0 9 37.46053728007726 39.0 37.0 39.0 34.0 39.0 10-11 37.52133998567679 39.0 37.0 39.0 35.0 39.0 12-13 37.48396501207562 39.0 37.0 39.0 34.5 39.0 14-15 38.77662401452871 40.0 38.0 41.0 34.5 41.0 16-17 38.791467609591464 40.0 38.0 41.0 35.0 41.0 18-19 38.84870348376562 40.0 38.5 41.0 35.0 41.0 20-21 38.87331579179322 40.0 38.0 41.0 35.0 41.0 22-23 38.82399790964658 40.0 38.0 41.0 34.5 41.0 24-25 38.78625937438869 40.0 38.0 41.0 34.0 41.0 26-27 38.697546329204634 40.0 38.0 41.0 34.0 41.0 28-29 38.63315866713934 40.0 38.0 41.0 34.0 41.0 30-31 38.54593518925381 40.0 38.0 41.0 34.0 41.0 32-33 38.458233154899546 40.0 38.0 41.0 34.0 41.0 34-35 38.39462257413737 40.0 38.0 41.0 34.0 41.0 36-37 38.34231470068892 40.0 38.0 41.0 34.0 41.0 38-39 38.303464182221944 40.0 38.0 41.0 34.0 41.0 40-41 38.25120238091768 40.0 38.0 41.0 33.5 41.0 42-43 38.19398089484212 40.0 38.0 41.0 33.0 41.0 44-45 38.116891968067414 40.0 38.0 41.0 33.0 41.0 46-47 38.03499854342664 40.0 37.0 41.0 33.0 41.0 48-49 37.962304497687285 40.0 37.0 41.0 33.0 41.0 50-51 37.8728862562981 40.0 37.0 41.0 33.0 41.0 52-53 37.762739037485645 40.0 37.0 41.0 33.0 41.0 54-55 37.63484814175925 39.5 36.5 41.0 32.5 41.0 56-57 37.455227767480224 39.0 36.0 41.0 32.0 41.0 58-59 37.290624108067306 39.0 36.0 41.0 32.0 41.0 60-61 37.08177366127609 39.0 35.0 41.0 31.0 41.0 62-63 36.84826584097969 38.5 35.0 40.0 31.0 41.0 64-65 36.58922664762088 38.0 35.0 40.0 31.0 41.0 66-67 36.305768237317366 37.5 35.0 40.0 31.0 41.0 68-69 36.02261451119375 37.0 34.5 39.5 31.0 41.0 70-71 35.6971520603694 36.5 34.0 39.0 30.0 41.0 72-73 35.361884733165915 36.0 34.0 39.0 30.0 40.5 74-75 35.02356586927285 35.5 34.0 38.5 30.0 40.0 76-77 34.70718683633679 35.0 34.0 37.0 29.5 39.0 78-79 34.39227164611758 35.0 34.0 37.0 29.0 39.0 80-81 34.10337075200572 35.0 33.0 36.5 29.0 39.0 82-83 33.845139427562984 35.0 33.0 36.0 29.0 37.5 84-85 33.60531304244177 35.0 33.0 36.0 29.0 37.0 86-87 33.51938781224696 35.0 33.0 35.0 29.0 37.0 88-89 33.54321124148089 35.0 33.0 35.0 29.0 36.0 90-91 33.46165945226677 35.0 33.0 35.0 29.0 36.0 92-93 33.38039123186251 35.0 33.0 35.0 29.0 36.0 94-95 33.34079985849537 35.0 33.0 35.0 29.0 36.0 96-97 33.364264778479395 35.0 33.0 35.0 29.0 35.0 98-99 33.42466171036121 35.0 33.0 35.0 30.0 35.0 100 33.04088057538411 34.0 33.0 35.0 29.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 15 1.0 16 2.0 17 119.0 18 1250.0 19 4577.0 20 9737.0 21 16111.0 22 24842.0 23 37684.0 24 56477.0 25 82693.0 26 117219.0 27 158134.0 28 205491.0 29 261030.0 30 326412.0 31 412423.0 32 525969.0 33 692660.0 34 963008.0 35 1387189.0 36 2196091.0 37 3845792.0 38 4807820.0 39 2403731.0 40 110200.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.64154088275961 18.91613630364512 10.93307745911842 27.509245354476853 2 14.551330434291089 21.922350744783852 38.61732460009638 24.908994220828678 3 17.923788663272852 26.900061197189938 29.07308969547332 26.103060444063885 4 12.13197836695919 18.81719634323827 38.07576927173346 30.97505601806908 5 13.185327997748752 38.643760293370896 34.56451072523684 13.606400983643502 6 29.215451346069145 39.058864678956276 18.410494549668062 13.315189425306514 7 26.319321924749854 33.647169665004924 22.487333121606433 17.546175288638793 8 25.134691667602493 36.674617687605426 20.375888188459683 17.814802456332398 9 26.485979099100952 16.514880786705955 20.444104151188025 36.55503596300507 10-11 24.32809690013151 26.9976015010086 28.372820829808575 20.30148076905132 12-13 25.410400531741285 24.678239998129424 28.56246066990435 21.34889880022494 14-15 22.540777003412195 25.529976893451494 26.538296773974878 25.390949329161433 16-17 21.69953796556188 28.577693959379967 27.241873103078717 22.480894971979435 18-19 21.74018599146593 27.716051805947895 29.14814458480558 21.395617617780598 20-21 22.80779715492742 26.76727011066651 29.003669393266975 21.4212633411391 22-23 22.451508897868102 26.716667039237684 28.854933967847273 21.976890095046937 24-25 22.08727886475022 26.852571488102257 29.021440187994664 22.03870945915286 26-27 22.022563920575912 27.035961547328093 28.904525304759467 22.03694922733653 28-29 22.031895199106874 27.003909198345966 28.998358143148533 21.965837459398625 30-31 22.30325061796184 26.90367658682017 28.849539386500357 21.94353340871763 32-33 22.051469343155567 27.041585053284695 28.882859600116873 22.024086003442864 34-35 22.21072222556168 27.0416473302261 28.877157400741776 21.870473043470447 36-37 22.213961601999895 26.94263188087883 28.83269910137023 22.010707415751046 38-39 22.07931207806935 27.088322621540804 28.89399798074837 21.93836731964148 40-41 22.330751627808024 26.929082860986643 28.73049639376475 22.009669117440588 42-43 22.193015923245845 27.058702423313445 28.493154880011023 22.25512677342968 44-45 22.287389060619418 27.275045681950605 28.245235301307154 22.19232995612282 46-47 22.459053909377808 27.266161071021898 27.851754665496102 22.42303035410419 48-49 22.436172167654057 27.370022756673517 27.741380999955744 22.45242407571668 50-51 22.410695886880184 27.525829552145826 27.583887751877747 22.479586809096244 52-53 22.533791286708954 27.464043681700634 27.511776157892776 22.49038887369764 54-55 22.470336263252975 27.354845549771362 27.584318412732795 22.59049977424287 56-57 22.507376492863056 27.469238662737894 27.54578081862496 22.477604025774088 58-59 22.49061730813475 27.48915139988055 27.54260885303697 22.47762243894773 60-61 22.585632839073796 27.49235410476848 27.525598630703136 22.39641442545459 62-63 22.524636144496462 27.588081116393724 27.45641134202842 22.430871397081393 64-65 22.512354785605673 27.470951769200898 27.456155966719294 22.560537478474142 66-67 22.54469353848341 27.533238497821284 27.357862109099667 22.564205854595638 68-69 22.480607821087666 27.524215236527848 27.416628981015272 22.578547961369207 70-71 22.5259309146638 27.28294275310089 27.50419297502088 22.68693335721443 72-73 22.561741144216196 27.357698901064285 27.476406466491582 22.604153488227936 74-75 22.40054146308302 27.525312492077305 27.42771605983107 22.646429985008613 76-77 22.52247827828506 27.414982710659213 27.390333336600936 22.672205674454787 78-79 22.528128653489663 27.452212865839158 27.377003776957697 22.64265470371348 80-81 22.527858662326377 27.526679568922525 27.338648937664757 22.60681283108634 82-83 22.545136118460817 27.46176118973857 27.4427125947453 22.550390097055313 84-85 22.574973961114996 27.497859295088595 27.363428023093277 22.56373872070313 86-87 22.450779442570497 27.55977931731211 27.485586499445752 22.503854740671635 88-89 22.524237171337145 27.487954365103263 27.391074359606115 22.596734103953477 90-91 22.53026139269961 27.493811808288736 27.426767602704544 22.549159196307105 92-93 22.53845549766527 27.529901361978652 27.417161558559798 22.514481581796275 94-95 22.393488849963784 27.549143086949464 27.488601011773518 22.568767051313245 96-97 22.451966268939607 27.692231016531366 27.532337124488343 22.323465590040684 98-99 23.450004773718543 29.666381842789697 27.728515987639184 19.155097395852575 100 22.55428894601352 30.546492216355208 21.390181738288014 25.509037099343256 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 8337.0 1 7389.0 2 4894.0 3 3403.5 4 3942.0 5 7310.0 6 12351.5 7 19021.5 8 27093.5 9 30787.5 10 28488.5 11 24913.5 12 26675.0 13 35834.0 14 59427.0 15 92636.5 16 119165.0 17 133566.5 18 134328.0 19 122884.0 20 104551.0 21 85633.0 22 73365.5 23 73454.5 24 84649.5 25 105275.0 26 134060.0 27 167514.0 28 201508.0 29 238928.0 30 278160.5 31 317709.0 32 362472.0 33 408985.5 34 454459.0 35 495570.0 36 538032.0 37 579957.0 38 612752.0 39 638693.0 40 664618.0 41 688348.5 42 707913.0 43 731140.0 44 755092.0 45 778276.0 46 790887.5 47 798787.5 48 805791.5 49 798692.0 50 788144.5 51 773377.5 52 742303.5 53 703463.5 54 663193.5 55 615049.5 56 565817.0 57 514996.0 58 458309.0 59 400327.0 60 338812.5 61 277297.5 62 221488.0 63 172210.0 64 129093.0 65 95284.5 66 69876.5 67 51634.0 68 38803.5 69 27940.5 70 19735.0 71 14016.5 72 9883.0 73 6749.5 74 4502.5 75 3000.0 76 2106.0 77 1436.0 78 995.0 79 709.0 80 488.5 81 338.5 82 247.5 83 174.5 84 130.5 85 101.0 86 70.5 87 52.0 88 35.0 89 25.0 90 21.5 91 15.5 92 11.0 93 8.5 94 5.5 95 3.5 96 4.0 97 5.5 98 8.5 99 28.5 100 50.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 2.3596716667036705E-4 3 0.002043261147759315 4 0.0 5 0.10068826259627595 6 9.81408897742663E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 1.341073904624916E-5 22-23 1.7711628126655852E-4 24-25 1.557311701951591E-4 26-27 5.293034052828618E-4 28-29 1.7748028019295872E-4 30-31 2.692937456446786E-6 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 2.546833581234568E-5 48-49 0.0 50-51 0.0 52-53 2.9080342880506837E-6 54-55 0.0 56-57 0.0 58-59 0.0 60-61 1.2025509834266528E-5 62-63 2.729591225516704E-4 64-65 8.501856386458426E-4 66-67 0.0 68-69 0.0 70-71 0.0 72-73 6.033465665229919E-4 74-75 9.935915906510338E-5 76-77 0.0 78-79 0.0 80-81 0.0 82-83 0.0011022211225247035 84-85 7.427136582948658E-5 86-87 0.0 88-89 0.0 90-91 0.0 92-93 3.5099221244005746E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 3123.0 20-21 9265.0 22-23 9958.0 24-25 11623.0 26-27 14277.0 28-29 21773.0 30-31 39692.0 32-33 47846.0 34-35 64595.0 36-37 98229.0 38-39 131070.0 40-41 134405.0 42-43 153886.0 44-45 189979.0 46-47 184581.0 48-49 163741.0 50-51 142464.0 52-53 130075.0 54-55 137220.0 56-57 143034.0 58-59 146470.0 60-61 148670.0 62-63 137329.0 64-65 139143.0 66-67 148064.0 68-69 154842.0 70-71 158572.0 72-73 147266.0 74-75 143666.0 76-77 151717.0 78-79 161793.0 80-81 167773.0 82-83 161164.0 84-85 156398.0 86-87 161794.0 88-89 178968.0 90-91 197994.0 92-93 209883.0 94-95 250361.0 96-97 638930.0 98-99 1171072.0 100-101 1.1883957E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 79.95529634504754 #Duplication Level Percentage of deduplicated Percentage of total 1 87.29559709839383 69.79745335619951 2 8.176760118475945 13.075505568302207 3 2.299891237893538 5.516654564614682 4 0.968117497737786 3.0962448571380228 5 0.46157000478425625 1.845248325825511 6 0.24894650108048955 1.1942754760771943 7 0.14700622999094026 0.8227748678445692 8 0.10051047941257567 0.642907613377223 9 0.067365319282332 0.484759265993784 >10 0.22492228749879362 2.756822623253521 >50 0.006678553455741767 0.3611066824497302 >100 0.0025317727116313314 0.3339089760610957 >500 8.820277721581137E-5 0.05090466619473352 >1k 1.469650501653954E-5 0.02143315666833028 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.3628901515992516E-6 2 0.0 5.3628901515992516E-5 0.0 0.0 5.3628901515992516E-6 3 0.0 5.3628901515992516E-5 0.0 5.3628901515992516E-6 5.3628901515992516E-6 4 0.0 8.044335227398878E-5 0.0 2.1451560606397006E-5 1.0725780303198503E-5 5 1.6088670454797755E-5 8.044335227398878E-5 0.0 2.1451560606397006E-5 1.0725780303198503E-5 6 1.662495946995768E-4 8.044335227398878E-5 0.0 3.754023106119476E-5 2.1451560606397006E-5 7 1.662495946995768E-4 8.044335227398878E-5 0.0 4.290312121279401E-5 2.6814450757996258E-5 8 1.8233826515437455E-4 9.116913257718727E-5 0.0 4.290312121279401E-5 3.754023106119476E-5 9 1.8233826515437455E-4 2.1451560606397006E-4 0.0 5.8991791667591764E-5 4.826601136439326E-5 10-11 2.091527159123708E-4 2.1451560606397006E-4 0.0 7.508046212238953E-5 4.826601136439326E-5 12-13 2.4133005682196632E-4 2.198784962155693E-4 0.0 8.580624242558802E-5 5.362890151599251E-5 14-15 2.708259526557622E-4 2.7887028788316107E-4 0.0 8.580624242558802E-5 8.580624242558802E-5 16-17 3.9149098106674535E-4 2.8423317803476033E-4 0.0 1.0725780303198503E-4 1.0457635795618541E-4 18-19 4.0221676136994387E-4 3.056847386411573E-4 0.0 1.4211658901738014E-4 1.367536988657809E-4 20-21 4.1562398674894194E-4 3.2981774432335397E-4 0.0 1.6356814962377716E-4 1.6088670454797755E-4 22-23 4.478013276585375E-4 3.6735797538454875E-4 0.0 1.7965682007857492E-4 1.7965682007857492E-4 24-25 4.907044488713315E-4 3.9149098106674535E-4 0.0 2.091527159123708E-4 1.9574549053337267E-4 26-27 5.148374545535281E-4 4.0221676136994387E-4 0.0 2.949589583379588E-4 1.984269356091723E-4 28-29 5.282446799325263E-4 4.1294254167314234E-4 0.0 5.282446799325263E-4 2.0647127083657117E-4 30-31 5.416519053115243E-4 4.880230037955319E-4 0.0 0.0012575977405500244 2.091527159123708E-4 32-33 5.523776856147229E-4 4.907044488713315E-4 0.0 0.0026680378504206274 2.1451560606397006E-4 34-35 6.006436969791161E-4 5.550591306905225E-4 0.0 0.004518234952722369 2.198784962155693E-4 36-37 6.381839280403109E-4 6.274581477371125E-4 0.0 0.007036111878898218 2.198784962155693E-4 38-39 6.381839280403109E-4 6.462282632677098E-4 0.0 0.011109226949037848 2.3864861174616669E-4 40-41 6.381839280403109E-4 7.23990170465899E-4 0.0 0.015820525947217792 2.4669294697356555E-4 42-43 6.435468181919102E-4 7.454417310722959E-4 0.0 0.019751524428340043 2.520558371251648E-4 44-45 6.542725984951087E-4 8.553809791800805E-4 0.0 0.024092784006059638 2.547372822009644E-4 46-47 6.596354886467079E-4 9.38505776529869E-4 0.0 0.02880140155916378 2.6278161742836334E-4 48-49 6.596354886467079E-4 9.411872216056686E-4 0.0 0.03322310448915736 2.7887028788316107E-4 50-51 6.864499394047042E-4 0.0010752594753956498 0.0 0.037883456030897114 2.8691462311056E-4 52-53 6.971757197079027E-4 0.0010833038106230488 0.0 0.04263229526013825 3.1641051894435585E-4 54-55 6.971757197079027E-4 0.0010940295909262474 0.0 0.04677512790224867 3.432249697023521E-4 56-57 6.971757197079027E-4 0.001110118261381045 0.0 0.050617638695869535 3.566321950813502E-4 58-59 6.971757197079027E-4 0.001110118261381045 0.0 0.054433335038732406 3.807652007635469E-4 60-61 7.347159507690974E-4 0.001123525486760043 0.0 0.05791116930204451 3.9149098106674535E-4 62-63 7.990706325882884E-4 0.001153021382593839 0.0 0.06119593951989906 4.183054318247416E-4 64-65 7.990706325882884E-4 0.0011851987235034346 0.0 0.06408117442145946 4.183054318247416E-4 66-67 8.124778579672867E-4 0.0011851987235034346 0.0 0.06687255874536686 4.2098687690054126E-4 68-69 8.31247973497884E-4 0.00121737606441303 0.0 0.06957277393669709 4.317126572037398E-4 70-71 8.580624242558801E-4 0.0012388276250194271 0.0 0.071661619650745 4.5852710796173604E-4 72-73 9.009655454686742E-4 0.0012441905151710263 0.0 0.07357080854471433 4.719343333407341E-4 74-75 9.009655454686742E-4 0.0012790493011564214 0.0 0.07504024044625253 4.7729722349233337E-4 76-77 9.143727708476724E-4 0.0013836256591126068 0.0 0.07640509598983454 4.987487840987304E-4 78-79 9.277799962266705E-4 0.0014426174507801985 0.0 0.07741600078341099 5.0143022917453E-4 80-81 9.277799962266705E-4 0.0014426174507801985 0.0 0.07769487107129416 5.309261250083259E-4 82-83 9.358243314540693E-4 0.0014452988958559981 0.0 0.07801664448039011 5.631034659179213E-4 84-85 9.465501117572679E-4 0.001447980340931798 0.0 0.07818557552016547 5.684663560695205E-4 86-87 9.492315568330675E-4 0.0014587061212349964 0.0 0.07824724875690887 5.818735814485188E-4 88 9.706831174394645E-4 0.0015981412651765768 0.0 0.07824993020198467 5.952808068275169E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 28915 0.0 52.84797 1 GTATCAA 53355 0.0 37.739666 1 TCAACGC 66265 0.0 29.842772 4 ATCAACG 66355 0.0 29.77748 3 CAACGCA 67515 0.0 29.296528 5 TATCAAC 68270 0.0 29.190584 2 AACGCAG 69475 0.0 28.538633 6 ACGCAGA 80330 0.0 24.602852 7 CGCAGAG 81520 0.0 24.2489 8 GTACATG 71420 0.0 21.639158 1 TACATGG 70935 0.0 21.410852 2 GCAGAGT 94170 0.0 20.820734 9 ACATGGG 72455 0.0 20.423645 3 GAGTACT 52265 0.0 19.627634 12-13 CAGAGTA 91410 0.0 18.68546 10-11 AGAGTAC 86110 0.0 18.370966 10-11 GTACTTT 57415 0.0 17.871655 14-15 CATGGGG 46115 0.0 17.380869 4 AGTACTT 57025 0.0 17.247143 12-13 GTGGTAT 12560 0.0 17.134815 1 >>END_MODULE