##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139379_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5395051 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.971473856317576 32.0 25.0 33.0 18.0 33.0 2 30.036761468983332 32.0 29.0 33.0 25.0 33.0 3 31.255233175738283 33.0 31.0 33.0 28.0 33.0 4 31.795833255329747 33.0 31.0 33.0 29.0 33.0 5 32.62683726252078 33.0 33.0 33.0 32.0 34.0 6 36.54343582664927 38.0 37.0 38.0 34.0 38.0 7 36.772691676130584 38.0 37.0 38.0 34.0 38.0 8 36.94823422429186 38.0 38.0 38.0 35.0 38.0 9 37.16680379851831 38.0 38.0 38.0 36.0 38.0 10-11 37.2648565324035 38.0 38.0 38.0 36.5 38.0 12-13 37.31835046601043 38.0 38.0 38.0 37.0 38.0 14-15 37.32237711932658 38.0 38.0 38.0 37.0 38.0 16-17 37.32195043197923 38.0 38.0 38.0 37.0 38.0 18-19 37.32767660583746 38.0 38.0 38.0 37.0 38.0 20-21 37.2943691330812 38.0 38.0 38.0 37.0 38.0 22-23 37.309613565306094 38.0 38.0 38.0 37.0 38.0 24-25 37.3331329710645 38.0 38.0 38.0 37.0 38.0 26-27 37.31061893982434 38.0 38.0 38.0 37.0 38.0 28-29 37.29079568124811 38.0 38.0 38.0 37.0 38.0 30-31 37.290390204480516 38.0 38.0 38.0 37.0 38.0 32-33 37.2289192215537 38.0 38.0 38.0 37.0 38.0 34-35 37.243090144264826 38.0 38.0 38.0 37.0 38.0 36-37 37.243615262387706 38.0 38.0 38.0 37.0 38.0 38-39 37.23536019208281 38.0 38.0 38.0 37.0 38.0 40-41 37.224989563066735 38.0 38.0 38.0 37.0 38.0 42-43 37.196692541987105 38.0 38.0 38.0 36.0 38.0 44-45 37.172427449945154 38.0 38.0 38.0 36.0 38.0 46-47 37.14732750214803 38.0 38.0 38.0 36.0 38.0 48-49 37.10949930528001 38.0 38.0 38.0 36.0 38.0 50-51 37.08009626645541 38.0 38.0 38.0 36.0 38.0 52-53 37.046306329214204 38.0 38.0 38.0 36.0 38.0 54-55 37.02074075035811 38.0 38.0 38.0 36.0 38.0 56-57 36.990472950137544 38.0 38.0 38.0 36.0 38.0 58-59 36.99385079549946 38.0 38.0 38.0 36.0 38.0 60-61 37.01698401613739 38.0 38.0 38.0 36.0 38.0 62-63 37.02221342754427 38.0 38.0 38.0 36.0 38.0 64-65 37.01904369446683 38.0 38.0 38.0 36.0 38.0 66-67 37.02375057334611 38.0 38.0 38.0 36.0 38.0 68-69 37.02312933258885 38.0 38.0 38.0 36.0 38.0 70-71 37.01030730753948 38.0 38.0 38.0 36.0 38.0 72-73 36.98849665161977 38.0 38.0 38.0 36.0 38.0 74-75 36.97641997798912 38.0 38.0 38.0 36.0 38.0 76-77 36.97082136223706 38.0 38.0 38.0 36.0 38.0 78-79 36.93996351593987 38.0 38.0 38.0 36.0 38.0 80-81 36.91352237427073 38.0 38.0 38.0 35.0 38.0 82-83 36.897776991101225 38.0 38.0 38.0 35.0 38.0 84-85 36.85800795488586 38.0 38.0 38.0 35.0 38.0 86-87 36.84528637252678 38.0 38.0 38.0 35.0 38.0 88-89 36.851881637045544 38.0 38.0 38.0 35.0 38.0 90-91 36.83250011217369 38.0 38.0 38.0 35.0 38.0 92-93 36.8346922162912 38.0 38.0 38.0 35.0 38.0 94-95 36.762573506325054 38.0 38.0 38.0 35.0 38.0 96-97 36.69773483302546 38.0 38.0 38.0 34.0 38.0 98-99 36.78308058470385 38.0 38.0 38.0 35.0 38.0 100 35.11784470362091 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 13.0 19 28.0 20 65.0 21 155.0 22 454.0 23 1256.0 24 2995.0 25 5608.0 26 9724.0 27 15674.0 28 23794.0 29 34315.0 30 47449.0 31 62792.0 32 83762.0 33 113791.0 34 167123.0 35 292670.0 36 804079.0 37 3729302.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.076006695766175 19.500557084631822 14.27156110294416 26.15187511665784 2 13.468993505350053 20.62536075724823 43.228236583352206 22.677409154049506 3 17.227622129985427 26.82020985529145 30.846307106272025 25.1058609084511 4 11.945596065727646 18.817560760778722 39.57890296125097 29.657940212242668 5 13.189803655226259 37.6106529329376 36.07734194212348 13.122201469712664 6 29.084678444042883 38.65208980186034 19.355748148343118 12.907483605753663 7 25.92913394145857 33.00675007520781 23.672899477687977 17.391216505645637 8 23.999013169662344 36.79579674038299 21.652714682400592 17.552475407554073 9 25.40465326463086 17.06821677867364 21.550991825656514 35.97613813103898 10-11 23.634484641572435 26.909069070894788 29.556856830454432 19.89958945707835 12-13 24.70124934870866 24.47746091742228 29.448470459315402 21.372819274553663 14-15 21.877003572348062 25.850478521889787 27.034480304264036 25.238037601498114 16-17 21.42679466792807 29.048817147418998 27.66246324640861 21.86192493824433 18-19 21.49706277104702 28.227240113207458 29.323485542583377 20.952211573162145 20-21 22.315679351961368 27.446822392713827 29.14221109337242 21.095287161952385 22-23 22.003641451000984 27.3185194521975 29.016553355969215 21.661285740832305 24-25 21.802281798066442 27.41048554178129 29.081353507602053 21.70587915255021 26-27 21.749876022524507 27.61462702477232 28.959080481078953 21.676416471624222 28-29 21.703300116393105 27.63674335903797 29.023104504767446 21.636852019801477 30-31 21.927013835811376 27.477417045531087 28.97015307291658 21.625416045740955 32-33 21.81073408108285 27.607285800093965 28.878749278913347 21.703230839909843 34-35 21.908533206728823 27.622747359475653 28.881694397405887 21.58702503638964 36-37 21.83805344080314 27.55450595104466 28.889115917900497 21.718324690251702 38-39 21.686487805293957 27.663233122206215 28.936048450332724 21.7142306221671 40-41 22.05576800039349 27.457143913145828 28.87685391833999 21.610234168120698 42-43 21.771127133318714 27.495538651160327 28.80982177289466 21.923512442626297 44-45 21.897640817488394 27.569045713683206 28.67293285946284 21.860380609365556 46-47 21.898358137469263 27.568802170705336 28.625683622741242 21.907156069084156 48-49 21.81107432201225 27.746801035235602 28.57479673621252 21.867327906539625 50-51 21.85202531770821 27.842717530764844 28.317215991140394 21.98804116038655 52-53 21.94282702632611 27.674355037852155 28.236232192011045 22.14658574381069 54-55 22.026676973901836 27.3989731605004 28.51448691434701 22.059862951250754 56-57 21.90480555719368 27.263400135734038 28.612478539755536 22.219315767316747 58-59 21.78821297099745 27.087163055822554 28.63159926095443 22.493024712225566 60-61 21.911158352508156 27.244257023261447 28.939857305443855 21.904727318786538 62-63 21.540359069222877 27.453204412429944 28.913567739156914 22.092868779190265 64-65 21.41559348888594 27.701724463492145 28.610061171307144 22.272620876314768 66-67 21.47152761805605 28.17649151436586 28.2001811406785 22.15179972689959 68-69 21.562314618822807 28.161247387349942 28.04632050125811 22.23011749256914 70-71 21.555961997116142 27.687256926629626 28.059481626920153 22.697299449334075 72-73 21.69608385869515 27.323197542524376 28.047751731110253 22.932966867670217 74-75 21.79288764939828 27.395349676395007 28.133535065584457 22.67822760862225 76-77 22.134857588396688 27.30415534201706 27.6036788599175 22.957308209668746 78-79 22.26984963214932 27.401877065621242 27.199537977574984 23.128735324654453 80-81 22.149928388116756 27.662585595690654 27.331083529309108 22.85640248688348 82-83 22.114214884114197 27.507573029310784 27.389574479847205 22.988637606727814 84-85 22.213704983218328 27.791567138809715 27.33189393306531 22.662833944906644 86-87 22.510771098844245 27.72745052039155 27.390479168152993 22.371299212611213 88-89 22.351914268580682 27.86755935287384 27.60934481555262 22.17118156299286 90-91 22.363280120220082 27.54772162823334 27.504784310217 22.584213941329576 92-93 22.374075367687325 27.185916354670503 27.66138038467907 22.778627892963105 94-95 21.85088675155964 27.5547991811301 28.090811050229057 22.503503017081204 96-97 21.916072389555154 27.526400784654303 28.267961996497633 22.28956482929291 98-99 23.034420042448655 29.39991375801845 28.63969155576308 18.92597464376982 100 22.033363009627397 30.470882519123897 22.350289042207663 25.145465429041042 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 591.0 1 611.0 2 927.5 3 1363.0 4 1794.0 5 2494.0 6 3124.5 7 3928.0 8 5055.5 9 5834.0 10 5998.5 11 6102.0 12 6768.5 13 8141.5 14 10528.0 15 13283.0 16 15402.5 17 16633.5 18 16554.5 19 15395.0 20 14161.5 21 13444.0 22 14166.5 23 16903.5 24 21558.0 25 28373.5 26 37588.0 27 48732.5 28 60761.0 29 73941.5 30 86128.5 31 98732.0 32 113240.5 33 126867.5 34 139948.5 35 152322.5 36 165717.5 37 178649.5 38 188254.5 39 195919.0 40 205268.5 41 214253.5 42 218805.0 43 222797.0 44 225985.5 45 227444.0 46 226568.0 47 224776.5 48 222551.5 49 216755.0 50 210399.5 51 202352.5 52 190852.5 53 178112.5 54 165386.5 55 152306.0 56 138201.0 57 122880.5 58 107799.5 59 92780.0 60 76390.5 61 60937.0 62 47571.0 63 35841.5 64 26219.0 65 19202.5 66 14374.5 67 10919.5 68 8223.0 69 6046.5 70 4305.0 71 3091.5 72 2191.5 73 1522.0 74 995.0 75 603.5 76 363.5 77 223.5 78 141.0 79 79.5 80 54.5 81 38.5 82 21.0 83 12.0 84 9.0 85 7.0 86 4.0 87 1.5 88 0.5 89 0.0 90 0.5 91 1.0 92 1.5 93 2.0 94 1.5 95 1.0 96 1.0 97 0.5 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002761790389006517 3 0.0 4 0.0 5 0.004726554021454107 6 3.336391073967605E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 5.671202935868336E-5 44-45 1.901515745738822E-5 46-47 0.0 48-49 0.0 50-51 0.0 52-53 9.428684878284912E-4 54-55 0.0023828753544162364 56-57 0.0025398397215167924 58-59 0.001762290393326664 60-61 0.004013117216204341 62-63 0.0017443636113136072 64-65 0.001786020637865364 66-67 1.0995173119000758E-4 68-69 9.066009616014199E-5 70-71 9.138326853582681E-5 72-73 0.0 74-75 0.0 76-77 0.0 78-79 8.380592015495715E-5 80-81 2.746575970502619E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 2.2036083425526795E-5 92-93 2.0015752397136547E-4 94-95 0.0 96-97 0.0 98-99 1.2359124519168261E-5 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 40.0 20-21 120.0 22-23 273.0 24-25 338.0 26-27 906.0 28-29 2419.0 30-31 7911.0 32-33 10048.0 34-35 13796.0 36-37 22058.0 38-39 14020.0 40-41 26354.0 42-43 29356.0 44-45 35426.0 46-47 36181.0 48-49 33797.0 50-51 17336.0 52-53 3116.0 54-55 2743.0 56-57 2746.0 58-59 19048.0 60-61 34971.0 62-63 34104.0 64-65 36126.0 66-67 38490.0 68-69 39176.0 70-71 38607.0 72-73 36830.0 74-75 36911.0 76-77 38971.0 78-79 39722.0 80-81 39435.0 82-83 37692.0 84-85 37980.0 86-87 38808.0 88-89 40810.0 90-91 41492.0 92-93 42158.0 94-95 52515.0 96-97 181277.0 98-99 418698.0 100-101 3812246.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.16630526700577 #Duplication Level Percentage of deduplicated Percentage of total 1 90.54126748572301 78.92147760922155 2 6.972588498499029 12.155495551227594 3 1.4794536365485138 3.868755219353087 4 0.5085940777754435 1.7732906656146235 5 0.20098087009201765 0.875937993763462 6 0.10968752931708123 0.5736633998661809 7 0.06268287055969471 0.38246839611529904 8 0.033090413381606815 0.23074952593860415 9 0.024316051086613753 0.19075862987134937 >10 0.06590537269428484 0.8611662595498655 >50 8.422900908202808E-4 0.04949998571091269 >100 5.303175230762517E-4 0.0775508568117754 >500 6.058670881440103E-5 0.03918590695570644 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.8535505966486693E-5 2 0.0 1.8535505966486693E-5 0.0 0.0 1.8535505966486693E-5 3 0.0 1.8535505966486693E-5 0.0 0.0 1.8535505966486693E-5 4 0.0 1.1121303579892016E-4 0.0 0.0 1.8535505966486693E-5 5 0.0 1.1121303579892016E-4 0.0 0.0 1.8535505966486693E-5 6 9.267752983243347E-5 1.1121303579892016E-4 0.0 0.0 1.8535505966486693E-5 7 9.267752983243347E-5 1.1121303579892016E-4 0.0 0.0 1.8535505966486693E-5 8 1.1121303579892016E-4 1.2974854176540685E-4 0.0 1.8535505966486693E-5 1.8535505966486693E-5 9 1.1121303579892016E-4 2.594970835308137E-4 0.0 1.8535505966486693E-5 1.8535505966486693E-5 10-11 1.1121303579892016E-4 2.594970835308137E-4 0.0 1.8535505966486693E-5 1.8535505966486693E-5 12-13 1.1121303579892016E-4 2.594970835308137E-4 0.0 3.7071011932973386E-5 1.8535505966486693E-5 14-15 1.1121303579892016E-4 2.965680954637871E-4 0.0 3.7071011932973386E-5 4.6338764916216734E-5 16-17 1.2974854176540685E-4 2.965680954637871E-4 0.0 5.5606517899460075E-5 5.560651789946008E-5 18-19 1.2974854176540685E-4 3.058358484470304E-4 0.0 7.414202386594677E-5 8.340977684919012E-5 20-21 1.2974854176540685E-4 3.1510360143027376E-4 0.0 9.267752983243347E-5 9.267752983243347E-5 22-23 1.2974854176540685E-4 4.0778113126270726E-4 0.0 1.0194528281567682E-4 1.1121303579892015E-4 24-25 1.2974854176540685E-4 4.448521431956806E-4 0.0 1.1121303579892016E-4 1.2974854176540685E-4 26-27 1.2974854176540685E-4 4.633876491621673E-4 0.0 1.575518007151369E-4 1.2974854176540685E-4 28-29 1.2974854176540685E-4 4.633876491621673E-4 0.0 2.5022933054757036E-4 1.2974854176540685E-4 30-31 1.2974854176540685E-4 5.189941670616274E-4 0.0 9.453108042908214E-4 1.2974854176540685E-4 32-33 1.2974854176540685E-4 5.189941670616274E-4 0.0 0.002706183871107057 1.2974854176540685E-4 34-35 1.9462281264811027E-4 5.560651789946007E-4 0.0 0.0048470348102362705 1.2974854176540685E-4 36-37 2.40961577564327E-4 6.024039439108175E-4 0.0 0.010926680767243905 1.2974854176540685E-4 38-39 2.40961577564327E-4 6.209394498773042E-4 0.0 0.12886810523199874 1.6681955369838024E-4 40-41 2.40961577564327E-4 6.580104618102776E-4 0.0 0.25047955987811793 1.6681955369838024E-4 42-43 2.40961577564327E-4 7.136169797097376E-4 0.0 0.26502993206181 1.7608730668162357E-4 44-45 2.40961577564327E-4 7.784912505924411E-4 0.0 0.28306497936720154 1.8535505966486694E-4 46-47 2.40961577564327E-4 7.970267565589278E-4 0.0 0.3025272606320125 2.0389056563135363E-4 48-49 2.40961577564327E-4 8.433655214751445E-4 0.0 0.32147054772976197 2.0389056563135363E-4 50-51 2.8730034248054375E-4 0.0010379883341232548 0.0 0.3412108615840703 2.0389056563135363E-4 52-53 2.965680954637871E-4 0.0010565238400897414 0.0 0.7373238918408742 2.0389056563135363E-4 54-55 2.965680954637871E-4 0.0010565238400897414 0.0 1.2793854960777944 2.0389056563135363E-4 56-57 2.965680954637871E-4 0.0010750593460562281 0.0 1.8727533808299497 2.0389056563135363E-4 58-59 2.965680954637871E-4 0.0010843270990394714 0.0 2.4879560916106263 2.0389056563135363E-4 60-61 2.965680954637871E-4 0.0011399336169389317 0.0 2.6508646535500775 2.0389056563135363E-4 62-63 3.336391073967605E-4 0.001204807887821635 0.0 2.655544868806616 2.0389056563135363E-4 64-65 3.336391073967605E-4 0.0014086984534529886 0.0 2.659965586979623 2.0389056563135363E-4 66-67 3.336391073967605E-4 0.0014550372183692055 0.0 2.6645901957182607 2.0389056563135363E-4 68-69 3.336391073967605E-4 0.0015384469952183955 0.0 2.6689645751263518 2.0389056563135363E-4 70-71 3.799778723129772E-4 0.0015847857601346124 0.0 2.672745818343515 2.0389056563135363E-4 72-73 4.2631663722919393E-4 0.0016218567720675857 0.0 2.675600286262354 2.0389056563135363E-4 74-75 4.2631663722919393E-4 0.001658927784000559 0.0 2.678028437543964 2.0389056563135363E-4 76-77 4.2631663722919393E-4 0.0017330698078665057 0.0 2.6799561301644785 2.0389056563135363E-4 78-79 4.4485214319568066E-4 0.001770140819799479 0.0 2.6812258123231825 2.0389056563135363E-4 80-81 4.4485214319568066E-4 0.0017794085727827226 0.0 2.6817355387372612 2.0389056563135363E-4 82-83 4.54119896178924E-4 0.001788676325765966 0.0 2.682171123127474 2.0389056563135363E-4 84-85 4.8192315512865405E-4 0.0017979440787492093 0.0 2.6824769589759208 2.0389056563135363E-4 86-87 5.004586610951407E-4 0.0017979440787492093 0.0 2.6825603687527697 2.0389056563135363E-4 88 5.189941670616274E-4 0.0018535505966486693 0.0 2.682569636505753 2.0389056563135363E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5870 0.0 49.79558 1 ATCTCGT 3925 0.0 40.391098 94 GTATCAA 11210 0.0 39.505104 1 TATCTCG 4945 0.0 36.082844 94 TCAACGC 13050 0.0 33.19169 4 ATCAACG 13165 0.0 32.90175 3 CAACGCA 13340 0.0 32.437134 5 TATGCCG 2145 0.0 31.837143 86-87 AACGCAG 13820 0.0 31.309065 6 TATCAAC 14235 0.0 30.831776 2 ATGCCGT 2365 0.0 30.62223 88-89 TGCCGTC 2275 0.0 30.54627 88-89 GCCGTCT 2395 0.0 30.337112 90-91 TCTCGTA 2355 0.0 28.91264 82-83 CTCGTAT 2390 0.0 28.380909 82-83 CCGTCTT 2500 0.0 28.198627 90-91 TCGTATG 2490 0.0 28.121407 84-85 ACGCAGA 15740 0.0 27.489916 7 CGTATGC 2515 0.0 27.426321 84-85 CGCAGAG 16020 0.0 27.009441 8 >>END_MODULE