##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139378_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6217080 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.378667799031057 31.0 18.0 33.0 18.0 33.0 2 30.099726881429866 32.0 29.0 33.0 25.0 33.0 3 31.777275023001152 33.0 31.0 33.0 29.0 33.0 4 31.605105933975434 33.0 31.0 33.0 29.0 34.0 5 32.675346786594346 33.0 33.0 34.0 32.0 34.0 6 36.410454747244685 38.0 37.0 38.0 34.0 38.0 7 37.01994634136926 38.0 38.0 38.0 36.0 38.0 8 37.18408770676909 38.0 38.0 38.0 36.0 38.0 9 37.2197341838934 38.0 38.0 38.0 36.0 38.0 10-11 37.275159158318694 38.0 38.0 38.0 36.5 38.0 12-13 37.293254711214914 38.0 38.0 38.0 37.0 38.0 14-15 37.31518397704389 38.0 38.0 38.0 37.0 38.0 16-17 37.32563735708725 38.0 38.0 38.0 37.0 38.0 18-19 37.327233202725395 38.0 38.0 38.0 37.0 38.0 20-21 37.29180785938007 38.0 38.0 38.0 37.0 38.0 22-23 37.30200947227482 38.0 38.0 38.0 37.0 38.0 24-25 37.323694934146715 38.0 38.0 38.0 37.0 38.0 26-27 37.300938012823366 38.0 38.0 38.0 37.0 38.0 28-29 37.278026706668705 38.0 38.0 38.0 37.0 38.0 30-31 37.276377713993696 38.0 38.0 38.0 37.0 38.0 32-33 37.215486533380506 38.0 38.0 38.0 36.5 38.0 34-35 37.22675575672609 38.0 38.0 38.0 37.0 38.0 36-37 37.22449320206559 38.0 38.0 38.0 37.0 38.0 38-39 37.217120523230534 38.0 38.0 38.0 37.0 38.0 40-41 37.2080957164964 38.0 38.0 38.0 37.0 38.0 42-43 37.183257173919415 38.0 38.0 38.0 36.0 38.0 44-45 37.16094478338316 38.0 38.0 38.0 36.0 38.0 46-47 37.13730291541388 38.0 38.0 38.0 36.0 38.0 48-49 37.09662043929526 38.0 38.0 38.0 36.0 38.0 50-51 37.06798133685544 38.0 38.0 38.0 36.0 38.0 52-53 37.03472654351069 38.0 38.0 38.0 36.0 38.0 54-55 37.010658639866335 38.0 38.0 38.0 36.0 38.0 56-57 36.98233009461964 38.0 38.0 38.0 36.0 38.0 58-59 36.99155996812565 38.0 38.0 38.0 36.0 38.0 60-61 37.010645318694046 38.0 38.0 38.0 36.0 38.0 62-63 37.0205901546727 38.0 38.0 38.0 36.0 38.0 64-65 37.016397802356735 38.0 38.0 38.0 36.0 38.0 66-67 37.022269897260614 38.0 38.0 38.0 36.0 38.0 68-69 37.02096955078267 38.0 38.0 38.0 36.0 38.0 70-71 37.01067637199856 38.0 38.0 38.0 36.0 38.0 72-73 36.99124132023604 38.0 38.0 38.0 36.0 38.0 74-75 36.979229080887634 38.0 38.0 38.0 36.0 38.0 76-77 36.97505765366128 38.0 38.0 38.0 36.0 38.0 78-79 36.94569315683573 38.0 38.0 38.0 36.0 38.0 80-81 36.91833406426276 38.0 38.0 38.0 35.5 38.0 82-83 36.90099539653352 38.0 38.0 38.0 35.0 38.0 84-85 36.86786290663746 38.0 38.0 38.0 35.0 38.0 86-87 36.85634990366805 38.0 38.0 38.0 35.0 38.0 88-89 36.859961683479696 38.0 38.0 38.0 35.0 38.0 90-91 36.841380315703304 38.0 38.0 38.0 35.0 38.0 92-93 36.84740021561379 38.0 38.0 38.0 35.0 38.0 94-95 36.776741315036986 38.0 38.0 38.0 35.0 38.0 96-97 36.71366730073234 38.0 38.0 38.0 34.0 38.0 98-99 36.80453711906469 38.0 38.0 38.0 35.0 38.0 100 35.181222526521516 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 11.0 19 44.0 20 97.0 21 222.0 22 515.0 23 1419.0 24 3276.0 25 6466.0 26 11293.0 27 18703.0 28 27790.0 29 40187.0 30 55169.0 31 73100.0 32 96253.0 33 130077.0 34 190225.0 35 334510.0 36 945025.0 37 4282698.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.6508650363193 21.640657672090434 14.277779922407305 24.430697369182962 2 13.770777698531193 22.084816794013463 41.20568799600829 22.938717511447056 3 17.89708351830763 26.548990844576554 30.717716355588152 24.836209281527662 4 12.564998359358412 18.40730696725794 39.466115925804395 29.561578747579247 5 13.180153123374872 38.15365644509079 35.600404515687046 13.06578591584729 6 29.45279502376281 38.60325134022201 19.021155795811755 12.922797840203426 7 26.069943779064094 33.03824834781736 23.48372925613459 17.408078616983957 8 24.23251751626165 36.751915690324076 21.418205974508933 17.59736081890534 9 25.612104074581637 16.915497307417628 21.287115494733865 36.18528312326687 10-11 23.8333429841662 26.879274514723956 29.357946174088156 19.929436327021687 12-13 24.812604952807426 24.430697369182962 29.299317364421885 21.45738031358773 14-15 21.9611618315994 25.803640937546245 26.883914956860778 25.35128227399358 16-17 21.585639882388516 28.943828935770487 27.533142568537 21.937388613303995 18-19 21.617037258648754 28.173933743815425 29.177145862687947 21.03188313484787 20-21 22.435494540183086 27.381616170146028 28.997086623197234 21.18580266647365 22-23 22.14967350261231 27.27596116888405 28.838754099062086 21.735611229441552 24-25 21.923944989422125 27.361591026867394 28.95350424317425 21.760959740536233 26-27 21.88444112254658 27.51349483022942 28.830300041433453 21.771764005790548 28-29 21.81408516070643 27.563046765635306 28.88485115519289 21.73801691846537 30-31 22.07512905382007 27.392581317999888 28.823826435698578 21.70846319248146 32-33 21.92461947143135 27.538583755658752 28.754850301063183 21.781946471846712 34-35 22.00473470219661 27.534913778112802 28.785404111766148 21.67494740792444 36-37 21.982638380209814 27.46781777725653 28.758109725339676 21.79143411719398 38-39 21.813690084970002 27.56608535814443 28.7931727432794 21.827051813606165 40-41 22.16202908710324 27.38582285987509 28.772040407372607 21.68010764564906 42-43 21.894978761716597 27.467955004060745 28.62559611326909 22.01147012095357 44-45 21.98679013184784 27.524038431687657 28.54023117062301 21.9489402658415 46-47 21.97214287894275 27.487822495199794 28.510045784783 22.029988841074452 48-49 21.90295751004375 27.74499475430565 28.407786471517205 21.94426126413339 50-51 21.917448711406994 27.7949952800417 28.16094106625824 22.126614942293067 52-53 22.006584582776753 27.6326427073348 28.091867282818317 22.26890542707013 54-55 22.141701013063273 27.3502498238313 28.40074258751973 22.107306575585696 56-57 21.969029237893007 27.167933413853913 28.48629316575734 22.376744182495738 58-59 21.857321443877996 27.01393279634456 28.507085213515417 22.621660546262028 60-61 21.99579253717107 27.187857635620205 28.801028369574883 22.015321457633846 62-63 21.645189920578495 27.411970648551982 28.769034528094174 22.173804902775345 64-65 21.505487441374274 27.61337909407394 28.48395139009273 22.39718207445905 66-67 21.580755517012964 28.132884626989412 28.031308317667303 22.25505153833032 68-69 21.67299989910112 28.134406078499325 27.8933016306136 22.299292391785954 70-71 21.680562190259526 27.689645626793634 27.869240174397596 22.760552008549244 72-73 21.861194534518763 27.251870835980334 27.85573496784225 23.03119966165865 74-75 21.87792189756046 27.326810591868 28.016627374592673 22.77864013597887 76-77 22.22283178184843 27.2434952506468 27.465223317842884 23.068449649661883 78-79 22.38392904962657 27.31007888354157 27.043098664725456 23.262893402106403 80-81 22.19254670817566 27.635928453363995 27.21309828710215 22.958426551358198 82-83 22.223319364359238 27.441112463876056 27.233521243859343 23.102046927905363 84-85 22.281159367316736 27.74025866493209 27.217740732341916 22.760841235409256 86-87 22.680590607043698 27.634024785305428 27.269163576043887 22.41622103160699 88-89 22.433399026117502 27.827624407782153 27.47440846892239 22.264568097177957 90-91 22.43708854749324 27.497346546306705 27.37513004550279 22.690434860697266 92-93 22.4538643908527 27.122446155690312 27.565099012476917 22.85859044098007 94-95 21.927774428120443 27.5016323297881 27.958626312173816 22.61196692991764 96-97 21.989456033930068 27.481126399368744 28.170883266755435 22.358534299945752 98-99 23.157461252802772 29.324209250753245 28.48639181935318 19.031937677090802 100 22.188866580332935 30.37126153559791 22.220328075752743 25.219543808316413 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 863.0 1 860.5 2 1187.0 3 1676.5 4 2094.5 5 2724.5 6 3398.5 7 4660.5 8 6171.0 9 7050.0 10 7225.5 11 7286.0 12 8039.5 13 9496.0 14 12236.5 15 15601.0 16 18024.0 17 19001.5 18 18525.0 19 17164.5 20 15906.0 21 15514.5 22 16497.5 23 19394.0 24 24681.5 25 32292.5 26 42343.0 27 54537.0 28 67731.0 29 82160.5 30 96223.0 31 110296.0 32 126204.5 33 141846.5 34 156766.5 35 171422.0 36 187084.5 37 202239.0 38 213715.5 39 222735.5 40 233754.5 41 243678.0 42 250132.0 43 255996.5 44 259250.0 45 262217.0 46 263582.5 47 262521.0 48 260287.5 49 254645.0 50 247811.0 51 238620.5 52 226252.0 53 212130.0 54 196816.0 55 180617.5 56 164287.0 57 146767.0 58 128757.0 59 111336.0 60 92097.0 61 73316.0 62 57246.0 63 43708.5 64 32386.5 65 23539.0 66 17380.0 67 13255.0 68 9881.5 69 7093.0 70 5146.5 71 3744.0 72 2693.5 73 1845.0 74 1211.5 75 788.0 76 482.5 77 264.5 78 164.0 79 103.5 80 70.0 81 48.5 82 32.5 83 26.0 84 21.5 85 16.0 86 11.5 87 9.5 88 4.5 89 1.0 90 0.5 91 1.0 92 0.5 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0031847748460692156 3 0.0 4 0.0 5 0.004230281739980827 6 2.0910137878232224E-4 7 1.608472144479402E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 6.581428393730004E-5 44-45 1.6557243980510468E-5 46-47 0.0 48-49 0.0 50-51 1.6909834311524974E-5 52-53 0.0010844838322947425 54-55 0.002348295650252815 56-57 0.0027058117613409562 58-59 0.0017567388544891508 60-61 0.004214451781723475 62-63 0.001666145638305547 64-65 0.0016946000445610644 66-67 2.0898639768491834E-4 68-69 2.4566622838641684E-4 70-71 2.121921920169584E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 1.1841079236039072E-4 80-81 3.213612790325813E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 2.866015769009829E-5 92-93 2.7943961372580404E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 43.0 20-21 156.0 22-23 281.0 24-25 423.0 26-27 1315.0 28-29 3572.0 30-31 11113.0 32-33 13953.0 34-35 19008.0 36-37 29540.0 38-39 18194.0 40-41 33274.0 42-43 36322.0 44-45 42762.0 46-47 43344.0 48-49 40667.0 50-51 20750.0 52-53 3660.0 54-55 3207.0 56-57 3093.0 58-59 21499.0 60-61 39690.0 62-63 38379.0 64-65 40227.0 66-67 43005.0 68-69 43503.0 70-71 42773.0 72-73 40213.0 74-75 40434.0 76-77 42416.0 78-79 43809.0 80-81 43166.0 82-83 41044.0 84-85 40346.0 86-87 42584.0 88-89 44152.0 90-91 44985.0 92-93 45731.0 94-95 58054.0 96-97 210361.0 98-99 480647.0 100-101 4405385.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.97103500488129 #Duplication Level Percentage of deduplicated Percentage of total 1 89.9159041490446 77.30163343093062 2 7.225045065311399 12.422892044434619 3 1.6502885702193442 4.256310493154482 4 0.5874599445292464 2.0201815782035784 5 0.25476705540809785 1.0951293719290054 6 0.13499789015494873 0.6963545004057728 7 0.07404789828260622 0.44561821187042794 8 0.04203543202210507 0.28910636782541616 9 0.029343117181462014 0.22703923389238234 >10 0.0846550305773034 1.078334284642936 >50 9.129538685824617E-4 0.05218961195668797 >100 4.872719349171369E-4 0.08343557760653905 >500 5.562146537467096E-5 0.03177529314757763 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.608472144479402E-5 0.0 0.0 0.0 3 0.0 1.608472144479402E-5 0.0 0.0 0.0 4 0.0 6.433888577917607E-5 0.0 1.608472144479402E-5 0.0 5 0.0 8.042360722397009E-5 0.0 1.608472144479402E-5 0.0 6 1.4476249300314617E-4 8.042360722397009E-5 0.0 4.8254164334382056E-5 0.0 7 1.4476249300314617E-4 8.042360722397009E-5 0.0 6.433888577917607E-5 0.0 8 1.4476249300314617E-4 8.042360722397009E-5 0.0 6.433888577917607E-5 0.0 9 1.4476249300314617E-4 1.9301665733752822E-4 0.0 8.042360722397009E-5 0.0 10-11 1.6084721444794019E-4 2.0105901805992523E-4 0.0 9.650832866876411E-5 0.0 12-13 1.769319358927342E-4 2.0910137878232224E-4 0.0 9.650832866876411E-5 0.0 14-15 1.769319358927342E-4 2.6539790383910133E-4 0.0 9.650832866876411E-5 0.0 16-17 2.8952498600629234E-4 2.734402645614983E-4 0.0 1.2867777155835215E-4 0.0 18-19 2.8952498600629234E-4 3.0560970745108635E-4 0.0 1.5280485372554318E-4 8.04236072239701E-6 20-21 2.8952498600629234E-4 3.377791503406744E-4 0.0 1.8497429661513121E-4 1.608472144479402E-5 22-23 2.8952498600629234E-4 3.779909539526594E-4 0.0 2.2518610022711626E-4 1.608472144479402E-5 24-25 2.8952498600629234E-4 4.0211803611985047E-4 0.0 2.573555431167043E-4 2.4127082167191028E-5 26-27 2.8952498600629234E-4 4.182027575646445E-4 0.0 3.2169442889588037E-4 3.216944288958804E-5 28-29 2.8952498600629234E-4 4.182027575646445E-4 0.0 5.629652505677906E-4 3.216944288958804E-5 30-31 2.8952498600629234E-4 4.8254164334382056E-4 0.0 0.001592387423034608 3.216944288958804E-5 32-33 2.9756734672868937E-4 4.986263647886145E-4 0.0 0.0037155706537474182 4.8254164334382056E-5 34-35 3.0560970745108635E-4 5.227534469558056E-4 0.0 0.0064338885779176075 4.8254164334382056E-5 36-37 3.0560970745108635E-4 5.549228898453937E-4 0.0 0.013326191717011843 6.433888577917607E-5 38-39 3.0560970745108635E-4 6.031770541797758E-4 0.0 0.15367342868356204 6.433888577917607E-5 40-41 3.0560970745108635E-4 6.192617756245697E-4 0.0 0.29893454805149683 6.433888577917607E-5 42-43 3.0560970745108635E-4 6.353464970693637E-4 0.0 0.31503535421773565 6.433888577917607E-5 44-45 3.0560970745108635E-4 7.39897186460525E-4 0.0 0.3352699337952865 6.433888577917607E-5 46-47 3.0560970745108635E-4 8.20320793684495E-4 0.0 0.35663044387397297 8.042360722397009E-5 48-49 3.2169442889588037E-4 8.36405515129289E-4 0.0 0.3781678858885522 1.0455068939116112E-4 50-51 3.377791503406744E-4 9.489985652428472E-4 0.0 0.3991182355703964 1.1259305011355813E-4 52-53 3.377791503406744E-4 9.489985652428472E-4 0.0 0.8059732221557387 1.1259305011355813E-4 54-55 3.377791503406744E-4 9.811680081324352E-4 0.0 1.357285092036776 1.1259305011355813E-4 56-57 3.377791503406744E-4 0.0010213798117444202 0.0 1.9598428844409272 1.3672013228074916E-4 58-59 3.377791503406744E-4 0.0010696339760788024 0.0 2.5734267533954847 1.769319358927342E-4 60-61 3.538638717854684E-4 0.0011178881404131842 0.0 2.7343463490899262 1.9301665733752822E-4 62-63 4.0211803611985047E-4 0.0011420152225803753 0.0 2.7394773752308157 2.0910137878232224E-4 64-65 4.1016039684224745E-4 0.0012867777155835215 0.0 2.7442143256963076 2.0910137878232224E-4 66-67 4.262451182870415E-4 0.0013350318799179035 0.0 2.7488145560295187 2.0910137878232224E-4 68-69 4.342874790094385E-4 0.0013591589620850946 0.0 2.7535917182986225 2.1714373950471925E-4 70-71 4.423298397318355E-4 0.0013993707656970796 0.0 2.7573394583952595 2.2518610022711626E-4 72-73 4.6645692189902654E-4 0.0014234978478642707 0.0 2.7599290985478713 2.4127082167191028E-4 74-75 4.6645692189902654E-4 0.001471752012198653 0.0 2.762269425518089 2.4127082167191028E-4 76-77 5.066687255110116E-4 0.001568260340867417 0.0 2.7644649899953033 2.4127082167191028E-4 78-79 5.147110862334086E-4 0.00164064158736899 0.0 2.765920657286057 2.4127082167191028E-4 80-81 5.147110862334086E-4 0.00164064158736899 0.0 2.7664514530937354 2.573555431167043E-4 82-83 5.147110862334086E-4 0.0016486839480913868 0.0 2.7667972746047984 2.8952498600629234E-4 84-85 5.147110862334086E-4 0.001704980473148166 0.0 2.7669983336228583 3.0560970745108635E-4 86-87 5.147110862334086E-4 0.001785404080372136 0.0 2.767054630147915 3.2169442889588037E-4 88 5.147110862334086E-4 0.0018658276875961062 0.0 2.76707071486936 3.2169442889588037E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7120 0.0 48.82311 1 ATCTCGT 5070 0.0 38.960426 94 GTATCAA 12355 0.0 38.2252 1 TATGCCG 2795 0.0 33.742615 86-87 CCGTCTT 3060 0.0 31.628765 90-91 GCCGTCT 3130 0.0 31.524336 90-91 TATCTCG 6100 0.0 31.465393 94 TCAACGC 14960 0.0 31.450638 4 ATCAACG 15030 0.0 31.304161 3 ATGCCGT 3140 0.0 30.819359 88-89 TGCCGTC 3075 0.0 30.77916 88-89 CAACGCA 15445 0.0 30.49145 5 TCTCGTA 3130 0.0 29.460672 82-83 AACGCAG 16130 0.0 29.412819 6 TATCAAC 16115 0.0 29.388094 2 TCGTATG 3295 0.0 29.01667 84-85 CTCGTAT 3210 0.0 28.887835 82-83 CGTATGC 3280 0.0 28.352938 84-85 ACGCAGA 18775 0.0 25.081966 7 CGCAGAG 19175 0.0 24.535856 8 >>END_MODULE