##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139374_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7832771 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.09296875907645 33.0 31.0 34.0 30.0 34.0 2 32.273262680601796 33.0 31.0 34.0 30.0 34.0 3 32.29181396979434 34.0 31.0 34.0 30.0 34.0 4 36.0209372902642 37.0 35.0 37.0 35.0 37.0 5 35.892744598303715 37.0 35.0 37.0 35.0 37.0 6 35.91408161939115 37.0 35.0 37.0 35.0 37.0 7 35.862430677470336 37.0 35.0 37.0 35.0 37.0 8 35.8522484571552 37.0 35.0 37.0 35.0 37.0 9 37.632079885905 39.0 37.0 39.0 35.0 39.0 10-11 37.51714616704612 39.0 37.0 39.0 35.0 39.0 12-13 37.493449827653585 39.0 37.0 39.0 35.0 39.0 14-15 38.757649878950886 40.0 38.0 41.0 34.5 41.0 16-17 38.71843291473733 40.0 38.0 41.0 34.0 41.0 18-19 38.736821617790184 40.0 38.0 41.0 34.0 41.0 20-21 38.72153490945072 40.0 38.0 41.0 34.0 41.0 22-23 38.64164080651524 40.0 38.0 41.0 34.0 41.0 24-25 38.58183882065035 40.0 38.0 41.0 34.0 41.0 26-27 38.41504128075721 40.0 38.0 41.0 34.0 41.0 28-29 38.3119295647994 40.0 38.0 41.0 34.0 41.0 30-31 38.16583636654074 40.0 38.0 41.0 33.5 41.0 32-33 37.99668502614743 40.0 37.0 41.0 33.0 41.0 34-35 38.08388799802617 40.0 37.5 41.0 33.0 41.0 36-37 38.05843366594445 40.0 37.0 41.0 33.0 41.0 38-39 38.02552098453617 40.0 37.0 41.0 33.0 41.0 40-41 37.95636237027844 40.0 37.0 41.0 33.0 41.0 42-43 37.85560460696795 40.0 37.0 41.0 33.0 41.0 44-45 37.913104810893444 40.0 37.0 41.0 33.0 41.0 46-47 37.91301768368379 40.0 37.0 41.0 33.0 41.0 48-49 37.86271417554744 40.0 37.0 41.0 33.0 41.0 50-51 37.774412221335695 40.0 37.0 41.0 32.5 41.0 52-53 37.597198666537714 40.0 36.5 41.0 32.0 41.0 54-55 37.47944987247658 39.5 36.0 41.0 32.0 41.0 56-57 37.32069102893216 39.0 36.0 41.0 31.0 41.0 58-59 37.19244733206651 39.0 35.5 41.0 31.0 41.0 60-61 36.98114821313937 39.0 35.0 41.0 31.0 41.0 62-63 36.78070444619887 38.5 35.0 40.0 31.0 41.0 64-65 36.4949465440307 38.0 35.0 40.0 31.0 41.0 66-67 36.22275977439524 37.5 35.0 40.0 30.0 41.0 68-69 35.91931606832527 37.0 34.0 40.0 30.0 41.0 70-71 35.627446658967216 36.5 34.0 39.0 30.0 41.0 72-73 35.340483480958426 36.0 34.0 39.0 29.5 40.5 74-75 34.959115833090635 36.0 34.0 39.0 29.0 40.0 76-77 33.6518678134575 34.5 32.0 36.5 28.0 39.0 78-79 34.297850877811086 35.0 33.5 37.0 29.0 39.0 80-81 34.19477346790265 35.0 34.0 37.0 29.0 39.0 82-83 33.90578046127301 35.0 33.0 36.0 29.0 38.5 84-85 33.73483024509045 35.0 33.0 36.0 29.0 37.0 86-87 33.497330208372155 35.0 33.0 35.5 29.0 37.0 88-89 33.39182459578096 35.0 33.0 35.0 29.0 36.5 90-91 33.26782077032341 35.0 33.0 35.0 29.0 36.0 92-93 33.154106858856494 35.0 33.0 35.0 29.0 36.0 94-95 33.09971278646326 35.0 33.0 35.0 29.0 36.0 96-97 33.14744772585567 35.0 33.0 35.0 29.0 35.0 98-99 33.277140309864436 35.0 33.0 35.0 29.0 35.0 100 32.10895355879132 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 4.0 20 36.0 21 233.0 22 1169.0 23 4197.0 24 11136.0 25 24484.0 26 45271.0 27 71509.0 28 103672.0 29 138329.0 30 174933.0 31 215512.0 32 264107.0 33 332028.0 34 435329.0 35 596425.0 36 910371.0 37 1559053.0 38 2007576.0 39 903507.0 40 33890.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.01114407659818 20.520017756168283 14.746747989951448 23.722090177282087 2 14.455650497122921 21.49521542248586 41.42895279333457 22.62018128705665 3 17.80422279675992 26.555672315710492 30.951396383221212 24.688708504308373 4 12.440693082945998 18.578801805899854 39.379154580160716 29.601350530993436 5 13.006597537448753 38.086304323208225 35.91089283728581 12.996205302057215 6 29.28644281825678 38.58422517395185 19.143621076117252 12.985710931674117 7 26.065207319350968 32.96700490796935 23.53578318579721 17.43200458688247 8 24.2034906931404 36.78961123719818 21.414988386613114 17.59190968304831 9 25.46435993085972 17.031201346241325 21.377926151549687 36.126512571349274 10-11 23.875247980567796 26.86763726400274 29.34128930872612 19.915825446703344 12-13 24.83554670499112 24.485913095123042 29.24556967132066 21.43297052856518 14-15 21.940384950637835 25.91643659162489 26.887312733087228 25.255865724650047 16-17 21.512873728279512 29.035596428100874 27.533335903755233 21.918193939864384 18-19 21.553378411805728 28.250547788021596 29.15253003857258 21.0435437616001 20-21 22.390696914911633 27.459622239314825 28.99434324819852 21.155337597575027 22-23 22.08773537919784 27.35905595050066 28.83444293863843 21.71876573166307 24-25 21.877841628931538 27.506265632151965 28.897942226427126 21.717950512489374 26-27 21.81206287228524 27.678409436464595 28.792760896729895 21.716766794520268 28-29 21.777860171353776 27.792738959571565 28.78802281520737 21.641378053867285 30-31 22.075466299997675 27.60886669724802 28.694178233720248 21.62148876903406 32-33 21.829064642810557 27.7539022486841 28.66242777911768 21.754605329387662 34-35 21.93840946561949 27.8007386116331 28.66461066217188 21.59624126057553 36-37 21.962903838431792 27.685600392807526 28.633573046246674 21.71792272251401 38-39 21.75947553913404 27.832289687471278 28.632580910292138 21.775653863102544 40-41 22.12570751418228 27.654599219277582 28.578865018027972 21.640828248512165 42-43 21.916498737614102 27.7178713007523 28.421263056627684 21.944366905005914 44-45 21.991185933303957 27.812979444344414 28.228966785936088 21.96686783641554 46-47 22.003411249816292 27.77497663683374 28.16179062908822 22.05982148426175 48-49 21.8816114684337 28.03193414573203 28.09669982636208 21.989754559472185 50-51 21.930790491743746 28.12578520644515 27.81945430891352 22.12396999289758 52-53 21.965438910220115 27.914324620171683 27.737895419394665 22.38234105021354 54-55 22.114459369785262 27.631773369121333 28.086302817467196 22.167464443626212 56-57 21.93841075608254 27.4933153207855 28.130125910914455 22.438148012217503 58-59 21.82999271509435 27.305646576869336 28.17742112693965 22.686939581096667 60-61 21.99991246536065 27.531128298029767 28.445630564886986 22.0233286717226 62-63 21.586527168551328 27.741414619462805 28.385991957920893 22.286066254064973 64-65 21.42838699646175 28.009034928113774 28.089773091170766 22.47280498425371 66-67 21.52656862861676 28.543219921984043 27.644108402428248 22.28610304697095 68-69 21.598057713592038 28.53996733570262 27.522745543837697 22.339229406867645 70-71 21.580291002057507 28.06625190541182 27.53394443520237 22.8195126573283 72-73 21.781377856073263 27.635650674070884 27.538611892695137 23.044359577160716 74-75 21.84273302169534 27.706657074188296 27.653639822421596 22.796970081694763 76-77 22.120718911552476 27.61512284524689 27.14004818763791 23.12411005556272 78-79 22.300666803492966 27.677258720054894 26.741209534495958 23.280864941956185 80-81 22.14629754404483 28.008038477991043 26.906441796391512 22.939222181572617 82-83 22.099045150460466 27.78665879797224 26.99463674807837 23.11965930348892 84-85 22.19670724816157 28.102945004384072 26.94128827068838 22.759059476765977 86-87 22.550758341427095 28.043634499570707 27.002875887438716 22.402731271563482 88-89 22.29145195176489 28.212082790449315 27.278693203890725 22.217772053895068 90-91 22.294148336428556 27.84032065379609 27.202356818891936 22.66317419088341 92-93 22.267172930990373 27.480025207193954 27.404553687579714 22.84824817423596 94-95 21.599299853837266 27.90970844931227 27.920960679724406 22.57003101712606 96-97 21.627487747092143 27.852655002585614 28.191442686720002 22.328414563602237 98-99 22.788712697104867 29.779665534244025 28.502383168585354 18.929238600065755 100 21.858012350508684 31.08835357751148 22.081434316621987 24.972199755357845 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1973.0 1 1682.5 2 2031.0 3 2805.0 4 3587.0 5 5528.0 6 7331.0 7 8763.0 8 9866.0 9 10117.0 10 9531.5 11 8698.0 12 9133.5 13 11448.5 14 17295.0 15 26265.0 16 34160.5 17 38862.0 18 40394.0 19 39144.5 20 36561.0 21 34078.5 22 32982.0 23 35021.0 24 40497.5 25 49645.5 26 62665.0 27 77380.0 28 93163.0 29 110501.5 30 127837.5 31 145292.0 32 164191.0 33 183319.0 34 202373.0 35 219552.0 36 238326.5 37 256799.5 38 270890.5 39 282678.0 40 294934.5 41 306095.5 42 313881.0 43 320439.0 44 324902.5 45 328406.0 46 328937.5 47 327725.5 48 325472.5 49 318826.5 50 310260.0 51 299127.5 52 284587.0 53 267625.5 54 249257.5 55 230352.5 56 210605.5 57 189757.5 58 167981.0 59 145383.0 60 120612.0 61 96975.0 62 76693.5 63 58993.5 64 44493.5 65 33513.5 66 25506.5 67 19848.0 68 15304.5 69 11141.0 70 7896.0 71 5858.0 72 4221.0 73 2878.5 74 1957.5 75 1279.5 76 817.5 77 528.0 78 359.0 79 253.0 80 167.0 81 111.0 82 83.5 83 57.0 84 37.5 85 27.0 86 18.0 87 13.0 88 10.5 89 7.5 90 6.0 91 5.0 92 3.5 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 6.38343697268821E-6 16-17 9.575155459032314E-4 18-19 0.001704377671707752 20-21 0.0 22-23 0.003351719483168686 24-25 2.937405548043886E-4 26-27 0.0014757035001195576 28-29 0.0051457822483936206 30-31 0.0014976829117259933 32-33 0.005568900028684968 34-35 0.01097356503581469 36-37 5.494414216906674E-4 38-39 6.494710123551468E-6 40-41 0.002513888581454463 42-43 0.0060559291689055855 44-45 0.0018236582185976002 46-47 0.0018269916534589 48-49 0.002977255791100071 50-51 0.01044564240802884 52-53 0.006416933276591259 54-55 0.009886191881959688 56-57 0.018706684729709974 58-59 0.012110323261969745 60-61 0.016413502086405976 62-63 0.014536963273604438 64-65 0.011091759580323176 66-67 0.013184475439402899 68-69 0.008663538174706067 70-71 0.009113850377543415 72-73 0.006317457325321031 74-75 0.010505363833073735 76-77 0.011480759085837882 78-79 0.006875797776046429 80-81 0.00394368866750405 82-83 0.0021502744966961146 84-85 6.18836150211027E-5 86-87 0.0037161863228539747 88-89 6.019175032461964E-4 90-91 4.7377700488777263E-4 92-93 0.0014108913636485226 94-95 0.001112754315223866 96-97 4.8559871808753844E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 155.0 20-21 562.0 22-23 1332.0 24-25 3015.0 26-27 4231.0 28-29 7257.0 30-31 17825.0 32-33 22814.0 34-35 30511.0 36-37 43531.0 38-39 31092.0 40-41 52455.0 42-43 61299.0 44-45 68431.0 46-47 66635.0 48-49 59971.0 50-51 34442.0 52-53 11117.0 54-55 11203.0 56-57 10827.0 58-59 34877.0 60-61 59655.0 62-63 57755.0 64-65 60829.0 66-67 64006.0 68-69 65904.0 70-71 65276.0 72-73 63976.0 74-75 64611.0 76-77 64396.0 78-79 69544.0 80-81 71582.0 82-83 70144.0 84-85 71937.0 86-87 76088.0 88-89 84427.0 90-91 92665.0 92-93 105182.0 94-95 130966.0 96-97 324396.0 98-99 595894.0 100-101 4999956.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.94245532597228 #Duplication Level Percentage of deduplicated Percentage of total 1 90.14290894728559 77.47102925155278 2 7.002701881919582 12.036587872959512 3 1.6373880634935918 4.221634514942347 4 0.5708260284055514 1.962327617805851 5 0.2615388456108906 1.1238645277460162 6 0.13034324884940376 0.6721211304769181 7 0.08027539109583356 0.48293449491200396 8 0.04789753448076616 0.329314537386997 9 0.02870310763320541 0.22201339909349968 >10 0.0951629628984121 1.231939483770373 >50 0.0016834540961339233 0.0926185700404728 >100 4.578591317808566E-4 0.06973590349937667 >500 9.014036505134184E-5 0.055196311161485066 >1k 2.2534734213357112E-5 0.028682384652412858 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.276687394537642E-5 2 0.0 5.106749578150568E-5 0.0 0.0 1.276687394537642E-5 3 0.0 5.106749578150568E-5 0.0 1.276687394537642E-5 1.276687394537642E-5 4 0.0 7.660124367225851E-5 0.0 1.276687394537642E-5 1.276687394537642E-5 5 0.0 7.660124367225851E-5 0.0 1.276687394537642E-5 1.276687394537642E-5 6 0.0 7.660124367225851E-5 0.0 1.276687394537642E-5 1.276687394537642E-5 7 0.0 7.660124367225851E-5 0.0 1.276687394537642E-5 1.276687394537642E-5 8 0.0 1.0213499156301135E-4 0.0 1.276687394537642E-5 1.276687394537642E-5 9 0.0 2.2980373101677554E-4 0.0 2.553374789075284E-5 1.276687394537642E-5 10-11 0.0 2.2980373101677554E-4 0.0 3.8300621836129256E-5 1.276687394537642E-5 12-13 0.0 2.2980373101677554E-4 0.0 6.38343697268821E-5 1.276687394537642E-5 14-15 0.0 2.2980373101677554E-4 0.0 7.021780669957031E-5 1.276687394537642E-5 16-17 0.0 2.3618716798946376E-4 0.0 1.1490186550838777E-4 1.276687394537642E-5 18-19 0.0 2.617209158802166E-4 0.0 1.5320248734451702E-4 1.9150310918064628E-5 20-21 6.38343697268821E-6 2.8087122679828125E-4 0.0 1.7873623523526988E-4 2.553374789075284E-5 22-23 1.276687394537642E-5 3.447055965251633E-4 0.0 1.9150310918064628E-4 3.8300621836129256E-5 24-25 1.276687394537642E-5 3.766227813886044E-4 0.0 2.042699831260227E-4 6.38343697268821E-5 26-27 1.276687394537642E-5 3.95773092306669E-4 0.0 3.5108903349785153E-4 6.38343697268821E-5 28-29 1.276687394537642E-5 3.95773092306669E-4 0.0 8.489971173675319E-4 6.38343697268821E-5 30-31 1.276687394537642E-5 4.3407371414279827E-4 0.0 0.002770411646146683 6.38343697268821E-5 32-33 1.276687394537642E-5 4.3407371414279827E-4 0.0 0.007806943417597681 6.38343697268821E-5 34-35 1.276687394537642E-5 4.915246468969922E-4 0.0 0.013686088869443521 7.660124367225851E-5 36-37 1.276687394537642E-5 5.48975579651186E-4 0.0 0.025342244781572192 7.660124367225851E-5 38-39 1.9150310918064628E-5 5.617424535965625E-4 0.0 0.17093567525464487 1.1490186550838777E-4 40-41 2.553374789075284E-5 5.745093275419388E-4 0.0 0.32203801183514746 1.1490186550838777E-4 42-43 2.553374789075284E-5 5.936596384600035E-4 0.0 0.3476228272216818 1.2128530248107598E-4 44-45 2.553374789075284E-5 6.511105712141974E-4 0.0 0.38297430117642917 1.276687394537642E-4 46-47 2.553374789075284E-5 7.021780669957031E-4 0.0 0.4209429842899786 1.276687394537642E-4 48-49 2.553374789075284E-5 7.085615039683912E-4 0.0 0.45648596135390657 1.276687394537642E-4 50-51 2.553374789075284E-5 8.298468064494673E-4 0.0 0.48933512801536005 1.276687394537642E-4 52-53 2.553374789075284E-5 8.298468064494673E-4 0.0 0.9142358432284055 1.4043561339914062E-4 54-55 2.553374789075284E-5 8.362302434221555E-4 0.0 1.4888856063837435 1.5320248734451702E-4 56-57 2.553374789075284E-5 8.426136803948436E-4 0.0 2.114130490984608 1.7235279826258165E-4 58-59 2.553374789075284E-5 8.489971173675319E-4 0.0 2.7558446429750085 1.7873623523526988E-4 60-61 2.553374789075284E-5 8.617639913129083E-4 0.0 2.9300805551445332 1.7873623523526988E-4 62-63 2.553374789075284E-5 8.681474282855965E-4 0.0 2.9379130323100213 1.7873623523526988E-4 64-65 2.553374789075284E-5 9.575155459032314E-4 0.0 2.9444688220809723 1.7873623523526988E-4 66-67 2.553374789075284E-5 9.702824198486079E-4 0.0 2.949926660692621 1.7873623523526988E-4 68-69 2.553374789075284E-5 0.001002199604712049 0.0 2.9549568090270992 2.2980373101677554E-4 70-71 2.553374789075284E-5 0.0010277333526028018 0.0 2.959872055496069 2.4257060496215196E-4 72-73 2.553374789075284E-5 0.0010405002265481782 0.0 2.963338261772239 2.681043528529048E-4 74-75 2.553374789075284E-5 0.0010788008483843075 0.0 2.966421461830047 2.681043528529048E-4 76-77 2.553374789075284E-5 0.0011617855290292542 0.0 2.968923769123341 2.681043528529048E-4 78-79 2.553374789075284E-5 0.0012128530248107598 0.0 2.9706345302320214 2.74487789825593E-4 80-81 2.553374789075284E-5 0.0012192364617834481 0.0 2.971228189870481 2.872546637709694E-4 82-83 2.553374789075284E-5 0.0012256198987561362 0.0 2.971687797332515 3.0640497468903405E-4 84-85 2.553374789075284E-5 0.0012256198987561362 0.0 2.9718601501307775 3.255552856070987E-4 86-87 2.553374789075284E-5 0.001251153646646889 0.0 2.9719431348114225 3.447055965251633E-4 88 2.553374789075284E-5 0.0013149880163737713 0.0 2.9719495182483953 3.447055965251633E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9440 0.0 49.410282 1 ATCTCGT 6450 0.0 42.33754 94 GTATCAA 16590 0.0 36.778152 1 TATGCCG 3470 0.0 34.714504 86-87 CCGTCTT 3635 0.0 34.615166 90-91 GCCGTCT 3695 0.0 34.364067 90-91 TATCTCG 7685 0.0 31.67332 94 ATGCCGT 3980 0.0 31.378178 88-89 TGCCGTC 3940 0.0 31.128185 88-89 TCAACGC 19605 0.0 30.310066 4 CTCGTAT 3870 0.0 30.153349 82-83 ATCAACG 19840 0.0 30.059492 3 CGTATGC 4010 0.0 29.846455 84-85 CAACGCA 20130 0.0 29.540941 5 TCTCGTA 4025 0.0 29.45657 82-83 TCGTATG 4165 0.0 29.255827 84-85 AACGCAG 20760 0.0 28.727373 6 TATCAAC 21240 0.0 28.280752 2 ACGCAGA 23720 0.0 25.088089 7 CGCAGAG 24220 0.0 24.587933 8 >>END_MODULE