##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139373_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8236858 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.09225884433118 33.0 31.0 34.0 30.0 34.0 2 32.27200213965082 33.0 31.0 34.0 30.0 34.0 3 32.291324070416174 34.0 31.0 34.0 30.0 34.0 4 36.020799071684856 37.0 35.0 37.0 35.0 37.0 5 35.89342343888895 37.0 35.0 37.0 35.0 37.0 6 35.91319979050264 37.0 35.0 37.0 35.0 37.0 7 35.85947408587109 37.0 35.0 37.0 35.0 37.0 8 35.84945837356914 37.0 35.0 37.0 35.0 37.0 9 37.631586947352986 39.0 37.0 39.0 35.0 39.0 10-11 37.51475605139727 39.0 37.0 39.0 35.0 39.0 12-13 37.49314004199174 39.0 37.0 39.0 35.0 39.0 14-15 38.75705238575195 40.0 38.0 41.0 34.5 41.0 16-17 38.7175392000202 40.0 38.0 41.0 34.0 41.0 18-19 38.73758586101643 40.0 38.0 41.0 34.0 41.0 20-21 38.72179506409658 40.0 38.0 41.0 34.0 41.0 22-23 38.644248203454254 40.0 38.0 41.0 34.0 41.0 24-25 38.58516491349148 40.0 38.0 41.0 34.0 41.0 26-27 38.417888881682565 40.0 38.0 41.0 34.0 41.0 28-29 38.317318790330816 40.0 38.0 41.0 34.0 41.0 30-31 38.17452572425472 40.0 38.0 41.0 33.5 41.0 32-33 38.00683487438444 40.0 37.0 41.0 33.0 41.0 34-35 38.094829056620306 40.0 37.5 41.0 33.0 41.0 36-37 38.07128898163204 40.0 37.5 41.0 33.0 41.0 38-39 38.04035641911806 40.0 37.0 41.0 33.0 41.0 40-41 37.97427869675357 40.0 37.0 41.0 33.0 41.0 42-43 37.8774469143022 40.0 37.0 41.0 33.0 41.0 44-45 37.93647004311232 40.0 37.0 41.0 33.0 41.0 46-47 37.93765443572934 40.0 37.0 41.0 33.0 41.0 48-49 37.89059078006618 40.0 37.0 41.0 33.0 41.0 50-51 37.8072647208695 40.0 37.0 41.0 33.0 41.0 52-53 37.63314571022383 40.0 37.0 41.0 32.0 41.0 54-55 37.52299320854095 39.5 36.0 41.0 32.0 41.0 56-57 37.3682858057325 39.0 36.0 41.0 31.5 41.0 58-59 37.246546490777504 39.0 36.0 41.0 31.0 41.0 60-61 37.040094905042615 39.0 35.0 41.0 31.0 41.0 62-63 36.84528684374131 39.0 35.0 40.0 31.0 41.0 64-65 36.56318579555935 38.0 35.0 40.0 31.0 41.0 66-67 36.291521600381685 38.0 35.0 40.0 30.5 41.0 68-69 35.992138048243746 37.0 34.0 40.0 30.0 41.0 70-71 35.70001914665571 37.0 34.0 39.0 30.0 41.0 72-73 35.40980743910647 36.0 34.0 39.0 30.0 41.0 74-75 35.02409517561819 36.0 34.0 39.0 29.0 40.0 76-77 33.7054347670462 34.5 32.0 36.5 28.0 39.0 78-79 34.34607494187611 35.0 33.5 37.0 29.0 39.0 80-81 34.233730184717444 35.0 34.0 37.0 29.0 39.0 82-83 33.937869596460274 35.0 33.0 36.0 29.0 38.5 84-85 33.7617249103651 35.0 33.0 36.0 29.0 37.0 86-87 33.52220311595167 35.0 33.0 35.5 29.0 37.0 88-89 33.417035090651936 35.0 33.0 35.0 29.0 36.5 90-91 33.290030644077 35.0 33.0 35.0 29.0 36.0 92-93 33.17217908201947 35.0 33.0 35.0 29.0 36.0 94-95 33.11690803100771 35.0 33.0 35.0 29.0 36.0 96-97 33.16287923480132 35.0 33.0 35.0 29.0 35.0 98-99 33.29012653102404 35.0 33.0 35.0 29.0 35.0 100 32.126923194778534 34.0 31.0 35.0 27.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 6.0 20 24.0 21 225.0 22 1231.0 23 4373.0 24 11525.0 25 25775.0 26 47015.0 27 74087.0 28 107858.0 29 143218.0 30 181655.0 31 224004.0 32 275364.0 33 345051.0 34 453402.0 35 620272.0 36 939480.0 37 1623667.0 38 2144965.0 39 976430.0 40 37231.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.86467194165542 20.601265676790835 14.694741611425133 23.839320770128612 2 14.376003568350942 21.57130789434515 41.585286525517375 22.467402011786533 3 17.679022753579098 26.693904398983204 31.00604623753378 24.62102660990392 4 12.388789511728865 18.70374601577446 39.55799650789172 29.34946796460495 5 12.896774473955967 38.198995296507476 36.03463845072963 12.86959177880692 6 29.197516820127284 38.67275604362732 19.226384623845647 12.903342512399751 7 25.93070075992569 32.99602833993253 23.73357656523883 17.339694334902944 8 24.077894750643996 36.82776854960957 21.61830396979042 17.47603272995601 9 25.498922040418808 17.023044466712914 21.454770739036658 36.02326275383162 10-11 23.728101176443737 26.957609321418435 29.518154859535034 19.796134642602798 12-13 24.708324746421802 24.57402595589398 29.365671313361926 21.3519779843223 14-15 21.812971645255992 26.005292309276186 27.03561236578317 25.146123679684656 16-17 21.4155648651587 29.083601950787656 27.66960808874784 21.831225095305804 18-19 21.44043640640711 28.387219630712497 29.216220134067832 20.956123828812565 20-21 22.285646018727338 27.599157343255264 29.058624353090735 21.056572284926666 22-23 21.960207089149677 27.524067489876437 28.865572855618616 21.650152565355274 24-25 21.778987038347903 27.624886512902115 28.944175733742554 21.65195071500743 26-27 21.741470898453898 27.82106762470386 28.79670817073063 21.64075330611162 28-29 21.647055118899075 27.96531574889778 28.811850600382904 21.575778531820237 30-31 22.00080576680203 27.719650125074025 28.747663212363012 21.531880895760935 32-33 21.78318652004295 27.8661177023657 28.68244906487228 21.668246712719068 34-35 21.87314481586135 27.923892644280023 28.70002653925376 21.502936000604862 36-37 21.86472062228558 27.865528338186024 28.64576492712602 21.623986112402374 38-39 21.6748631806643 27.95661499213179 28.66717589023707 21.70134593696684 40-41 22.050669175966515 27.76610699297506 28.630088174468828 21.5531356565896 42-43 21.81316344581431 27.85085671760672 28.456795655122196 21.879184181456772 44-45 21.898409880554357 27.946665973163316 28.274743977646132 21.880180168636198 46-47 21.895545953201616 27.887572818045374 28.248830218833387 21.968051009919623 48-49 21.832500727316997 28.12280607704045 28.152907937416416 21.891785258226136 50-51 21.849605159512574 28.230153558619175 27.89106154754919 22.029179734319058 52-53 21.893265556352056 28.028278951675745 27.812580793359672 22.26587469861253 54-55 22.020737398600335 27.772927777212043 28.16071223473702 22.045622589450605 56-57 21.873903365255533 27.529550159082756 28.242828624239856 22.35371785142185 58-59 21.721319665610036 27.40982310685701 28.269961785981906 22.598895441551047 60-61 21.89562160547269 27.591418834833597 28.536107303618408 21.9768522560753 62-63 21.476592698507055 27.788955741562 28.537035451954356 22.19741610797659 64-65 21.32871478966118 28.055753897397693 28.22035738172543 22.395173931215695 66-67 21.37609119210473 28.63729464646071 27.74654265514855 22.240071506286014 68-69 21.500265796864447 28.645110274198153 27.56546758963961 22.289156339297787 70-71 21.497999733417004 28.16879903259809 27.58032188314889 22.752879350836018 72-73 21.67449316961321 27.661196760179852 27.609253863200884 23.055056207006057 74-75 21.76490798991409 27.72348311675927 27.749693580189433 22.76191531313721 76-77 22.02476642281233 27.692441152924324 27.177964094245965 23.104828330017384 78-79 22.260543669699295 27.74189205593628 26.742686581769888 23.25487769259454 80-81 22.055757947394834 28.076767329088163 26.912805353364583 22.954669370152416 82-83 22.03221059904549 27.867626172802495 27.015739726953846 23.084423501198163 84-85 22.137325630196035 28.210343878511246 26.970433398687625 22.681897092605094 86-87 22.514995536045536 28.11098282394786 27.020687377181414 22.353334262825193 88-89 22.24949161200522 28.288922084138168 27.322600483274417 22.138985820582192 90-91 22.239975639580088 27.910617723158023 27.219212591215225 22.630194046046665 92-93 22.21798600873884 27.536434990700272 27.422033817364504 22.823545183196376 94-95 21.522585364330098 27.995914442669278 27.979240969124593 22.502259223876035 96-97 21.571889637722013 27.8835298225278 28.258746368878708 22.285834170871478 98-99 22.692828427928298 29.838496284549276 28.590094429211483 18.878580858310944 100 21.81313104230186 31.09776463558504 22.112028681303528 24.977075640809574 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1912.0 1 1697.5 2 2131.0 3 2977.0 4 3847.5 5 5817.0 6 7616.5 7 9006.0 8 9977.5 9 9984.5 10 9409.5 11 8828.0 12 9480.0 13 11952.5 14 17657.0 15 26378.5 16 34200.0 17 39081.5 18 40922.5 19 39900.0 20 37290.5 21 34780.5 22 33662.0 23 35434.5 24 41277.5 25 50727.0 26 64115.0 27 80065.5 28 97056.5 29 116033.0 30 134676.5 31 153757.0 32 175235.0 33 196314.0 34 216809.0 35 235768.0 36 256257.0 37 276725.5 38 291197.5 39 303952.0 40 319426.5 41 332124.0 42 339588.5 43 346591.0 44 352434.0 45 356384.5 46 357046.0 47 356054.5 48 353357.0 49 345006.0 50 333458.0 51 318399.0 52 299733.0 53 279160.0 54 258051.5 55 236293.5 56 212984.5 57 188915.0 58 165024.5 59 141360.5 60 116908.0 61 93503.5 62 73387.5 63 56170.5 64 41806.5 65 31483.0 66 23964.5 67 18453.5 68 14115.5 69 10184.5 70 7309.5 71 5326.0 72 3740.5 73 2544.0 74 1721.5 75 1189.5 76 795.0 77 499.0 78 311.5 79 204.0 80 142.0 81 100.5 82 77.5 83 52.0 84 33.5 85 22.0 86 16.5 87 15.0 88 13.5 89 9.5 90 7.0 91 7.5 92 6.5 93 3.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 6.0702758260492045E-6 14-15 0.0 16-17 0.0010015955112981187 18-19 0.00160255281807699 20-21 0.0 22-23 0.0033815921543662217 24-25 2.1253641811524405E-4 26-27 0.0016220013856873261 28-29 0.005069651171527088 30-31 0.0015947086835478958 32-33 0.005455010744662663 34-35 0.010957337697496065 36-37 5.472466636861194E-4 38-39 4.9431158584795816E-5 40-41 0.0026405355130280916 42-43 0.005744412682611938 44-45 0.0016222160531723288 46-47 0.0020005388712666617 48-49 0.0028281964501249484 50-51 0.010244616295380864 52-53 0.006383425870256935 54-55 0.009225291047515847 56-57 0.017820144470317233 58-59 0.011192449001873854 60-61 0.01550078378220965 62-63 0.013861596959384792 64-65 0.010924230699160792 66-67 0.012405999592673052 68-69 0.008301844439643888 70-71 0.008307675590769953 72-73 0.005791158733786057 74-75 0.009892805042119441 76-77 0.011378810148907344 78-79 0.006294577500447595 80-81 0.003817901155117564 82-83 0.002091031369053072 84-85 5.174915852171875E-5 86-87 0.003754726879521286 88-89 4.3175014846145456E-4 90-91 5.377208073678198E-4 92-93 0.0015059746226889824 94-95 0.0012874489699335368 96-97 3.343074726933987E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 170.0 20-21 632.0 22-23 1433.0 24-25 3107.0 26-27 4471.0 28-29 7873.0 30-31 19309.0 32-33 24573.0 34-35 32898.0 36-37 47253.0 38-39 33372.0 40-41 56590.0 42-43 65860.0 44-45 73132.0 46-47 70796.0 48-49 64192.0 50-51 36433.0 52-53 11788.0 54-55 11822.0 56-57 11421.0 58-59 37349.0 60-61 64159.0 62-63 63357.0 64-65 65883.0 66-67 69543.0 68-69 71095.0 70-71 70554.0 72-73 68915.0 74-75 70655.0 76-77 69461.0 78-79 74831.0 80-81 76592.0 82-83 74717.0 84-85 77523.0 86-87 81999.0 88-89 90325.0 90-91 98051.0 92-93 111206.0 94-95 137713.0 96-97 339902.0 98-99 624383.0 100-101 5221520.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.07078733782407 #Duplication Level Percentage of deduplicated Percentage of total 1 90.0780771406666 77.53091021374425 2 7.089529777956249 12.204028196872867 3 1.6497873514602117 4.259954888404917 4 0.5649837388582671 1.9451438094639457 5 0.24372519840866771 1.048880986055071 6 0.13629177468677908 0.7038444212976238 7 0.07643568292774683 0.46052155872068135 8 0.03950555095004998 0.27202190995882597 9 0.02812391904271682 0.21785830695286737 >10 0.09182672421436737 1.1836189231513967 >50 0.0010804120051931562 0.058720148290035454 >100 5.698857965681821E-4 0.07822087136914817 >500 6.284302656541279E-5 0.03627576571840837 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2140551652098409E-5 0.0 0.0 0.0 3 0.0 1.2140551652098409E-5 0.0 0.0 0.0 4 0.0 4.8562206608393636E-5 0.0 0.0 0.0 5 0.0 4.8562206608393636E-5 0.0 2.4281103304196818E-5 0.0 6 0.0 4.8562206608393636E-5 0.0 2.4281103304196818E-5 0.0 7 0.0 4.8562206608393636E-5 0.0 3.642165495629523E-5 1.2140551652098409E-5 8 0.0 6.070275826049205E-5 0.0 3.642165495629523E-5 1.2140551652098409E-5 9 0.0 8.498386156468886E-5 0.0 3.642165495629523E-5 1.2140551652098409E-5 10-11 0.0 8.498386156468886E-5 0.0 4.856220660839364E-5 1.2140551652098409E-5 12-13 0.0 8.498386156468886E-5 0.0 7.284330991259046E-5 1.2140551652098409E-5 14-15 0.0 1.4568661982518091E-4 0.0 7.891358573863966E-5 1.2140551652098409E-5 16-17 0.0 1.5782717147727932E-4 0.0 9.105413739073807E-5 1.2140551652098409E-5 18-19 6.0702758260492045E-6 1.6996772312937773E-4 0.0 1.0319468904283648E-4 1.2140551652098409E-5 20-21 1.2140551652098409E-5 1.9424882643357454E-4 0.0 1.214055165209841E-4 2.4281103304196818E-5 22-23 1.2140551652098409E-5 2.0638937808567295E-4 0.0 1.335460681730825E-4 2.4281103304196818E-5 24-25 1.2140551652098409E-5 2.306704813898698E-4 0.0 2.0638937808567295E-4 2.4281103304196818E-5 26-27 1.2140551652098409E-5 2.549515846940666E-4 0.0 3.2779489460665705E-4 2.4281103304196818E-5 28-29 1.2140551652098409E-5 2.549515846940666E-4 0.0 8.376980639947903E-4 2.4281103304196818E-5 30-31 1.2140551652098409E-5 3.1565434295455864E-4 0.0 0.0029015918448515197 2.4281103304196818E-5 32-33 1.2140551652098409E-5 3.1565434295455864E-4 0.0 0.0077335314023866866 2.4281103304196818E-5 34-35 1.2140551652098409E-5 3.763571012150507E-4 0.0 0.014058758813129957 2.4281103304196818E-5 36-37 1.2140551652098409E-5 4.492004111276411E-4 0.0 0.026618159497225763 2.4281103304196818E-5 38-39 1.2140551652098409E-5 4.6134096277973953E-4 0.0 0.1785510931474113 2.4281103304196818E-5 40-41 1.2140551652098409E-5 4.73481514431838E-4 0.0 0.3366453567610368 2.4281103304196818E-5 42-43 1.2140551652098409E-5 4.856220660839364E-4 0.0 0.36343955425721797 2.4281103304196818E-5 44-45 1.2140551652098409E-5 5.584653759965268E-4 0.0 0.39911456528690914 2.4281103304196818E-5 46-47 1.2140551652098409E-5 6.191681342570188E-4 0.0 0.43590043679276735 2.4281103304196818E-5 48-49 1.2140551652098409E-5 6.191681342570188E-4 0.0 0.4708227336200284 2.4281103304196818E-5 50-51 1.2140551652098409E-5 6.555897892133141E-4 0.0 0.5046402402469485 3.642165495629523E-5 52-53 2.4281103304196818E-5 6.555897892133141E-4 0.0 0.9510968867012155 3.642165495629523E-5 54-55 2.4281103304196818E-5 6.555897892133141E-4 0.0 1.5538509951245971 3.642165495629523E-5 56-57 2.4281103304196818E-5 6.677303408654126E-4 0.0 2.2069519712492314 3.642165495629523E-5 58-59 2.4281103304196818E-5 6.677303408654126E-4 0.0 2.8736442949483894 3.642165495629523E-5 60-61 2.4281103304196818E-5 6.738006166914618E-4 0.0 3.0526870804377104 3.642165495629523E-5 62-63 2.4281103304196818E-5 6.798708925175109E-4 0.0 3.0605602281840962 4.856220660839364E-5 64-65 2.4281103304196818E-5 7.527142024301014E-4 0.0 3.0671889693861423 6.070275826049205E-5 66-67 2.4281103304196818E-5 7.587844782561506E-4 0.0 3.0729010989384546 6.070275826049205E-5 68-69 2.4281103304196818E-5 7.830655815603474E-4 0.0 3.078291503871986 6.677303408654125E-5 70-71 2.4281103304196818E-5 7.952061332124458E-4 0.0 3.0827835079832626 7.284330991259046E-5 72-73 2.4281103304196818E-5 8.073466848645442E-4 0.0 3.086031105550199 7.891358573863966E-5 74-75 2.4281103304196818E-5 8.194872365166427E-4 0.0 3.0892787031171354 8.498386156468886E-5 76-77 2.4281103304196818E-5 8.31627788168741E-4 0.0 3.0921681544103343 8.498386156468886E-5 78-79 2.4281103304196818E-5 8.376980639947903E-4 0.0 3.0939892371581497 9.105413739073807E-5 80-81 2.4281103304196818E-5 8.376980639947903E-4 0.0 3.0946084052924063 9.712441321678727E-5 82-83 2.4281103304196818E-5 8.376980639947903E-4 0.0 3.095179011220055 9.712441321678727E-5 84-85 2.4281103304196818E-5 8.559088914729378E-4 0.0 3.0954157519772707 9.712441321678727E-5 86-87 2.4281103304196818E-5 8.741197189510854E-4 0.0 3.0955128763904876 1.0319468904283648E-4 88 2.4281103304196818E-5 8.862602706031839E-4 0.0 3.0955128763904876 1.0926496486888568E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8955 0.0 48.62397 1 ATCTCGT 7050 0.0 38.426155 94 GTATCAA 16070 0.0 35.726753 1 TATCTCG 8555 0.0 34.840767 94 TATGCCG 3795 0.0 34.41286 86-87 GCCGTCT 4085 0.0 34.264164 90-91 CCGTCTT 3995 0.0 33.663525 90-91 ATGCCGT 4135 0.0 33.247112 88-89 TGCCGTC 4050 0.0 32.903637 88-89 CTCGTAT 4200 0.0 30.326729 82-83 TCTCGTA 4310 0.0 30.299324 82-83 TCGTATG 4400 0.0 30.267403 84-85 ATCAACG 18920 0.0 29.48262 3 TCAACGC 18900 0.0 29.445656 4 CGTATGC 4410 0.0 29.274319 84-85 CAACGCA 19260 0.0 28.939861 5 AACGCAG 19845 0.0 28.108398 6 TATCAAC 20380 0.0 27.644434 2 CGCTATC 13255 0.0 25.713854 94 ACGCAGA 22850 0.0 24.336695 7 >>END_MODULE