##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139372_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6234376 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.594012295697276 18.0 18.0 30.0 18.0 33.0 2 30.21699252659769 31.0 27.0 33.0 27.0 33.0 3 31.921976313266956 33.0 31.0 33.0 29.0 33.0 4 32.3012750594446 33.0 33.0 33.0 31.0 34.0 5 32.825676058036926 33.0 33.0 34.0 32.0 34.0 6 36.852491412131705 38.0 37.0 38.0 35.0 38.0 7 37.093221839683714 38.0 38.0 38.0 36.0 38.0 8 37.128319658615396 38.0 38.0 38.0 36.0 38.0 9 37.25589698151026 38.0 38.0 38.0 36.0 38.0 10-11 37.287104916354096 38.0 38.0 38.0 37.0 38.0 12-13 37.306973304144634 38.0 38.0 38.0 37.0 38.0 14-15 37.31109320323317 38.0 38.0 38.0 37.0 38.0 16-17 37.30763223135723 38.0 38.0 38.0 37.0 38.0 18-19 37.30783714360507 38.0 38.0 38.0 37.0 38.0 20-21 37.27675115096504 38.0 38.0 38.0 37.0 38.0 22-23 37.28998481567663 38.0 38.0 38.0 37.0 38.0 24-25 37.31246669313629 38.0 38.0 38.0 37.0 38.0 26-27 37.288075600961406 38.0 38.0 38.0 37.0 38.0 28-29 37.26743509480431 38.0 38.0 38.0 37.0 38.0 30-31 37.26826232925073 38.0 38.0 38.0 37.0 38.0 32-33 37.21086083065276 38.0 38.0 38.0 36.5 38.0 34-35 37.22470204665247 38.0 38.0 38.0 36.5 38.0 36-37 37.221221786137704 38.0 38.0 38.0 36.5 38.0 38-39 37.21388258436655 38.0 38.0 38.0 36.5 38.0 40-41 37.20527297014335 38.0 38.0 38.0 36.5 38.0 42-43 37.179882275659295 38.0 38.0 38.0 36.0 38.0 44-45 37.15444873355811 38.0 38.0 38.0 36.0 38.0 46-47 37.121563803686854 38.0 38.0 38.0 36.0 38.0 48-49 37.074898813638356 38.0 38.0 38.0 36.0 38.0 50-51 37.04275180065296 38.0 38.0 38.0 36.0 38.0 52-53 37.008516733382116 38.0 38.0 38.0 36.0 38.0 54-55 36.986227373842105 38.0 38.0 38.0 36.0 38.0 56-57 36.95715152167232 38.0 38.0 38.0 36.0 38.0 58-59 36.966818045402995 38.0 38.0 38.0 36.0 38.0 60-61 36.99168278153691 38.0 38.0 38.0 36.0 38.0 62-63 36.99980573614587 38.0 38.0 38.0 36.0 38.0 64-65 36.99863281626379 38.0 38.0 38.0 36.0 38.0 66-67 37.00490751094526 38.0 38.0 38.0 36.0 38.0 68-69 37.00343169008866 38.0 38.0 38.0 36.0 38.0 70-71 36.99398779459483 38.0 38.0 38.0 36.0 38.0 72-73 36.96956265772636 38.0 38.0 38.0 36.0 38.0 74-75 36.95994149451888 38.0 38.0 38.0 36.0 38.0 76-77 36.95578497883469 38.0 38.0 38.0 36.0 38.0 78-79 36.92433905696427 38.0 38.0 38.0 35.0 38.0 80-81 36.897652900288534 38.0 38.0 38.0 35.0 38.0 82-83 36.88229628520685 38.0 38.0 38.0 35.0 38.0 84-85 36.849487433332754 38.0 38.0 38.0 35.0 38.0 86-87 36.83482876639403 38.0 38.0 38.0 35.0 38.0 88-89 36.83797166749943 38.0 38.0 38.0 35.0 38.0 90-91 36.815459313798726 38.0 38.0 38.0 35.0 38.0 92-93 36.820036316391004 38.0 38.0 38.0 35.0 38.0 94-95 36.74867925681558 38.0 38.0 38.0 34.5 38.0 96-97 36.68759332386682 38.0 38.0 38.0 34.0 38.0 98-99 36.783446450586084 38.0 38.0 38.0 34.5 38.0 100 35.19241065625853 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 7.0 19 31.0 20 91.0 21 219.0 22 626.0 23 1567.0 24 3563.0 25 6714.0 26 11548.0 27 18522.0 28 28231.0 29 40968.0 30 56379.0 31 75157.0 32 98986.0 33 133449.0 34 195834.0 35 342990.0 36 1005780.0 37 4213714.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 36.40678714277099 18.391335395876027 21.82393233901837 23.377945122334616 2 14.597604298448779 21.112294359753676 40.840107605583285 23.44999373621426 3 18.32059856511702 25.891075546293646 30.471582079746234 25.3167438088431 4 12.827089671845265 18.027385579567227 37.94678088071685 31.19874386787066 5 13.623372152821378 37.372833587364056 35.397168565293704 13.60662569452086 6 30.414994685107665 37.34809408939381 18.50389349748146 13.73301772801706 7 26.85789674185464 32.59345162907268 22.794041102756893 17.75461052631579 8 25.197453602413454 35.89125840340717 20.745684892922725 18.165603101256643 9 26.17211409770601 16.535528174752372 20.654176135670994 36.63818159187062 10-11 24.77483712884818 26.26466546130679 28.373609483932317 20.586887925912713 12-13 25.65231869235991 23.920212704527284 28.51401647895475 21.913452124158056 14-15 22.77790110830659 25.066462144727875 26.108106087922835 26.0475306590427 16-17 22.307380883026624 28.237044092303705 26.75197966885539 22.70359535581428 18-19 22.435942265914022 27.402461770031195 28.47066811498055 21.690927849074228 20-21 23.291401814351975 26.465443068755846 28.292354608991687 21.950800507900496 22-23 23.143756211834713 26.352230999084387 28.15484207102008 22.349170718060822 24-25 22.79669029007325 26.55265873811915 28.171299361689172 22.47935161011842 26-27 22.657909042844746 26.67581564068661 28.18529207235893 22.480983244109712 28-29 22.629139180187043 26.68160125249603 28.227498584988247 22.461760982328684 30-31 22.803404669760653 26.58338729820991 28.100731866516593 22.512476165512847 32-33 22.698621566637257 26.689366634377965 28.084187029048806 22.527824769935968 34-35 22.815439222957668 26.66902047059577 28.064935317290647 22.45060498915592 36-37 22.809929548891596 26.621816935833 28.04363574829146 22.524617766983944 38-39 22.638957327888882 26.693924105095245 28.10823689861061 22.558881668405263 40-41 22.842203118842125 26.490326519450274 28.18082486335758 22.486645498350022 42-43 22.64218462796377 26.633099902723362 27.933202882718756 22.791512586594116 44-45 22.67337013717506 26.66097151456526 27.91641697813833 22.749241370121347 46-47 22.804814046532794 26.69568669003991 27.805112993740376 22.69438626968692 48-49 22.723806882876566 26.905060403456826 27.603816141751775 22.767316571914833 50-51 22.714183913738744 27.00978100521078 27.39968455538521 22.87635052566527 52-53 22.76849568730439 26.779983275874024 27.34544733157073 23.10607370525086 54-55 22.877416234870246 26.613251772021616 27.571512787630432 22.937819205477705 56-57 22.73810215437661 26.389922846146934 27.72721238893216 23.14476261054429 58-59 22.609812724842556 26.244873716422525 27.728762780857817 23.4165507778771 60-61 22.764612232370297 26.403251769590508 28.063379306818874 22.76875669122032 62-63 22.446497777983698 26.601963608119878 27.98615577032249 22.965382843573934 64-65 22.27305517906471 26.81863722626783 27.695444066844583 23.212863527822883 66-67 22.328563376278687 27.264141011304837 27.35007215807449 23.057223454341987 68-69 22.414130103335363 27.28545609602347 27.173505305484497 23.12690849515667 70-71 22.430700222675462 26.888941624830725 27.18719973204356 23.493158420450257 72-73 22.632273299067332 26.5162280271127 27.075153628111686 23.776345045708283 74-75 22.626197849842743 26.60984923697519 27.294783616654495 23.469169296527568 76-77 23.057738983477464 26.442719476456734 26.73022779166142 23.76931374840438 78-79 23.10911676516661 26.54136793825696 26.33027916022121 24.019236136355214 80-81 22.97817738459856 26.89657571429902 26.471988902164075 23.65325799893835 82-83 22.986583850931677 26.68115942028986 26.502213020473892 23.830043708304576 84-85 22.998680345680082 27.052913558284608 26.443725374688558 23.504680721346748 86-87 23.428681610530873 26.878571379859682 26.540027433653034 23.1527195759564 88-89 23.13814953825982 27.050645511551767 26.74176722411718 23.069437726071232 90-91 23.2146039894237 26.694536513059656 26.644256841287632 23.446602656229008 92-93 23.199262522746864 26.389857293362706 26.79435877789484 23.616521405995595 94-95 22.63289948297009 26.688192419698236 27.279749424998663 23.399158672333005 96-97 22.79160947987819 26.619923024082475 27.4153120775948 23.17315541844453 98-99 23.98201689434968 28.541046770831347 27.60678853081932 19.87014780399965 100 22.938251834111785 29.443251569168172 21.4358177495916 26.182678847128443 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1161.0 1 1381.5 2 1937.5 3 2352.0 4 2763.0 5 3382.5 6 4003.0 7 6074.0 8 7898.5 9 8017.5 10 8069.5 11 8286.0 12 9084.5 13 10821.5 14 14550.5 15 18800.5 16 20982.5 17 20951.5 18 19163.0 19 16595.0 20 14271.5 21 12822.5 22 12939.0 23 14961.5 24 18697.0 25 24375.0 26 32298.0 27 41675.5 28 52456.5 29 65364.5 30 78083.5 31 90901.5 32 104836.5 33 118313.0 34 131807.5 35 143973.5 36 156396.0 37 170335.5 38 182529.0 39 192577.0 40 202872.0 41 212925.5 42 221618.0 43 231169.0 44 240493.5 45 250061.5 46 257539.5 47 262411.0 48 265821.5 49 265074.0 50 263190.5 51 260847.0 52 255132.5 53 246059.5 54 235737.0 55 222971.5 56 206135.5 57 186485.0 58 165490.0 59 142887.5 60 119032.5 61 96011.5 62 75313.0 63 57560.5 64 43005.0 65 31784.5 66 23582.0 67 17873.0 68 13487.0 69 9710.0 70 6840.0 71 4873.0 72 3315.0 73 2143.5 74 1339.0 75 795.0 76 496.5 77 288.5 78 179.0 79 117.5 80 71.5 81 42.0 82 23.0 83 18.5 84 16.5 85 12.5 86 8.0 87 5.0 88 3.5 89 1.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.00203709240507791 3 0.0 4 0.0 5 0.0035609016844668972 6 1.1228068374445174E-4 7 1.6040097677778818E-5 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 7.375024071259122E-5 44-45 2.4735236094118234E-5 46-47 0.0 48-49 0.0 50-51 2.5251723914148515E-5 52-53 0.0010796172149688252 54-55 0.0021436391853529692 56-57 0.002727433548361492 58-59 0.001816449854367189 60-61 0.004339603621794118 62-63 0.0017267376173465668 64-65 0.0017724775536368058 66-67 1.992953954618532E-4 68-69 1.571359219614125E-4 70-71 2.2869129296603636E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 7.246745056519629E-5 80-81 2.6477259914021946E-4 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 3.798274045282453E-5 92-93 2.490176731673688E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 51.0 20-21 190.0 22-23 344.0 24-25 479.0 26-27 1269.0 28-29 3266.0 30-31 10571.0 32-33 12951.0 34-35 17706.0 36-37 27672.0 38-39 17660.0 40-41 32175.0 42-43 35603.0 44-45 42336.0 46-47 42774.0 48-49 39949.0 50-51 20456.0 52-53 3600.0 54-55 3226.0 56-57 3141.0 58-59 21396.0 60-61 38943.0 62-63 37752.0 64-65 39993.0 66-67 42539.0 68-69 43095.0 70-71 42707.0 72-73 39779.0 74-75 40178.0 76-77 42049.0 78-79 43301.0 80-81 43046.0 82-83 41026.0 84-85 40655.0 86-87 41807.0 88-89 43818.0 90-91 45190.0 92-93 45826.0 94-95 58947.0 96-97 216719.0 98-99 494157.0 100-101 4416034.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.477624218949 #Duplication Level Percentage of deduplicated Percentage of total 1 88.33869992042825 73.74304795948011 2 7.998840247195112 13.354483606855174 3 2.062607464341541 5.165447124585073 4 0.7319228354351679 2.443967176548984 5 0.3601749599116887 1.5033274978291487 6 0.18161537511533982 0.909649202175708 7 0.10086219397325781 0.5893815428478851 8 0.06453519267247158 0.4309795650248044 9 0.041423457086422054 0.31121386060590905 >10 0.11777864001381627 1.4465179662872323 >50 0.0012482609068011489 0.06502689740206276 >100 2.914529201754196E-4 0.03695760035786004 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.6040097677778818E-5 0.0 0.0 0.0 3 0.0 1.6040097677778818E-5 0.0 0.0 0.0 4 0.0 1.6040097677778818E-5 0.0 1.6040097677778818E-5 1.6040097677778818E-5 5 0.0 1.6040097677778818E-5 0.0 1.6040097677778818E-5 1.6040097677778818E-5 6 0.0 1.6040097677778818E-5 0.0 1.6040097677778818E-5 1.6040097677778818E-5 7 0.0 1.6040097677778818E-5 0.0 1.6040097677778818E-5 1.6040097677778818E-5 8 0.0 1.6040097677778818E-5 0.0 3.2080195355557636E-5 3.2080195355557636E-5 9 0.0 4.8120293033336454E-5 0.0 3.2080195355557636E-5 3.2080195355557636E-5 10-11 0.0 4.8120293033336454E-5 0.0 3.2080195355557636E-5 3.2080195355557636E-5 12-13 0.0 4.8120293033336454E-5 0.0 1.1228068374445173E-4 3.2080195355557636E-5 14-15 0.0 1.0426063490556232E-4 0.0 1.1228068374445173E-4 4.8120293033336454E-5 16-17 0.0 1.2030073258334113E-4 0.0 1.2030073258334113E-4 4.8120293033336454E-5 18-19 0.0 1.3634083026111996E-4 0.0 1.2832078142223054E-4 6.416039071111527E-5 20-21 0.0 1.684210256166776E-4 0.0 1.2832078142223054E-4 6.416039071111527E-5 22-23 0.0 1.9248117213334581E-4 0.0 1.4436087910000937E-4 7.218043955000469E-5 24-25 0.0 2.566415628444611E-4 0.0 1.4436087910000937E-4 8.020048838889409E-5 26-27 0.0 2.8872175820001875E-4 0.0 2.0852126981112465E-4 8.020048838889409E-5 28-29 0.0 2.8872175820001875E-4 0.0 3.92982393105581E-4 8.020048838889409E-5 30-31 0.0 3.2080195355557636E-4 0.0 0.0012511276188667479 8.020048838889409E-5 32-33 0.0 3.2080195355557636E-4 0.0 0.0031839593890390953 8.020048838889409E-5 34-35 0.0 4.090224907833599E-4 0.0 0.00557393394302814 9.624058606667291E-5 36-37 0.0 4.8120293033336456E-4 0.0 0.011693231207100759 1.0426063490556232E-4 38-39 0.0 5.052630768500328E-4 0.0 0.141922784252987 1.1228068374445173E-4 40-41 0.0 5.934836140778163E-4 0.0 0.27674782528355685 1.1228068374445173E-4 42-43 0.0 6.015036629167057E-4 0.0 0.29181749705183 1.1228068374445173E-4 44-45 0.0 6.416039071111527E-4 0.0 0.3097102260113923 1.1228068374445173E-4 46-47 0.0 6.736841024667104E-4 0.0 0.3303859119180492 1.2832078142223054E-4 48-49 0.0 6.736841024667104E-4 0.0 0.34989067069422825 1.4436087910000937E-4 50-51 0.0 8.020048838889409E-4 0.0 0.36978841186351286 1.5238092793889876E-4 52-53 0.0 8.180449815667197E-4 0.0 0.7661472455302665 1.684210256166776E-4 54-55 0.0 8.180449815667197E-4 0.0 1.2960479124133675 1.76441074455567E-4 56-57 0.0 8.340850792444986E-4 0.0 1.8705560909383714 1.76441074455567E-4 58-59 0.0 8.340850792444986E-4 0.0 2.465507373953704 1.76441074455567E-4 60-61 0.0 8.501251769222774E-4 0.0 2.6217700055306254 1.76441074455567E-4 62-63 0.0 8.661652746000562E-4 0.0 2.626325393271115 1.76441074455567E-4 64-65 0.0 0.0010426063490556231 0.0 2.6309930616953485 1.76441074455567E-4 66-67 0.0 0.001074686544411181 0.0 2.6356206298753877 1.76441074455567E-4 68-69 0.0 0.0010827065932500703 0.0 2.6397669951250933 1.76441074455567E-4 70-71 0.0 0.0010907266420889597 0.0 2.6431594757839436 1.76441074455567E-4 72-73 0.0 0.0010907266420889597 0.0 2.645838172096133 1.9248117213334581E-4 74-75 0.0 0.001098746690927849 0.0 2.647771003866305 1.9248117213334581E-4 76-77 0.0 0.0011388469351222962 0.0 2.6498321564179 1.9248117213334581E-4 78-79 0.0 0.0011869672281556326 0.0 2.651147444427478 1.9248117213334581E-4 80-81 0.0 0.0012270674723500797 0.0 2.651628647357811 2.0050122097223523E-4 82-83 0.0 0.0012671677165445267 0.0 2.6518612287741385 2.2456136748890345E-4 84-85 0.0 0.0013152880095778632 0.0 2.6520938101904665 2.2456136748890345E-4 86-87 0.0 0.0013233080584167526 0.0 2.652133910434661 2.2456136748890345E-4 88 0.0 0.0014275686933223149 0.0 2.652133910434661 2.2456136748890345E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7115 0.0 51.051018 1 ATCTCGT 5165 0.0 41.20574 94 GTATCAA 13475 0.0 33.94784 1 TATGCCG 2965 0.0 31.68089 86-87 TCGTATG 3165 0.0 31.16219 84-85 TCTCGTA 3210 0.0 29.912663 82-83 TCAACGC 17995 0.0 29.799597 4 GCCGTCT 3470 0.0 29.501236 90-91 ATCAACG 18215 0.0 29.48802 3 CTCGTAT 3195 0.0 29.245218 82-83 TATCTCG 6075 0.0 28.905075 94 CCGTCTT 3395 0.0 28.886692 90-91 CAACGCA 18605 0.0 28.82256 5 ATGCCGT 3460 0.0 28.787899 88-89 TATCAAC 18900 0.0 28.489843 2 CGTATGC 3340 0.0 28.04907 84-85 AACGCAG 19250 0.0 27.901218 6 TGCCGTC 3470 0.0 27.483448 88-89 ACGCAGA 21975 0.0 24.44134 7 CGCAGAG 22575 0.0 23.791735 8 >>END_MODULE