##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139370_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7740669 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.06340175506794 33.0 31.0 34.0 30.0 34.0 2 32.2404150080568 33.0 31.0 34.0 30.0 34.0 3 32.256464525223855 34.0 31.0 34.0 30.0 34.0 4 36.00061079991923 37.0 35.0 37.0 35.0 37.0 5 35.87104641730579 37.0 35.0 37.0 35.0 37.0 6 35.89438173883937 37.0 35.0 37.0 35.0 37.0 7 35.836736721335065 37.0 35.0 37.0 35.0 37.0 8 35.82532375431633 37.0 35.0 37.0 35.0 37.0 9 37.59901631241434 39.0 37.0 39.0 35.0 39.0 10-11 37.48083931763521 39.0 37.0 39.0 34.5 39.0 12-13 37.458314197390436 39.0 37.0 39.0 34.0 39.0 14-15 38.70631252931756 40.0 38.0 41.0 34.0 41.0 16-17 38.666199781956834 40.0 38.0 41.0 34.0 41.0 18-19 38.68604018593225 40.0 38.0 41.0 34.0 41.0 20-21 38.671220244971195 40.0 38.0 41.0 34.0 41.0 22-23 38.59130715855504 40.0 38.0 41.0 34.0 41.0 24-25 38.53266617833417 40.0 38.0 41.0 34.0 41.0 26-27 38.3651368023936 40.0 38.0 41.0 34.0 41.0 28-29 38.2592677600253 40.0 38.0 41.0 34.0 41.0 30-31 38.10627321492257 40.0 37.5 41.0 33.0 41.0 32-33 37.932083745162984 40.0 37.0 41.0 33.0 41.0 34-35 38.018298373686775 40.0 37.0 41.0 33.0 41.0 36-37 37.99166758456802 40.0 37.0 41.0 33.0 41.0 38-39 37.959523520878406 40.0 37.0 41.0 33.0 41.0 40-41 37.88783567359265 40.0 37.0 41.0 33.0 41.0 42-43 37.782979926553004 40.0 37.0 41.0 33.0 41.0 44-45 37.83792447815678 40.0 37.0 41.0 33.0 41.0 46-47 37.835298130167544 40.0 37.0 41.0 33.0 41.0 48-49 37.77882760637381 40.0 37.0 41.0 33.0 41.0 50-51 37.68819043445116 40.0 37.0 41.0 32.5 41.0 52-53 37.501416272094566 39.5 36.0 41.0 32.0 41.0 54-55 37.37612377352552 39.0 36.0 41.0 31.5 41.0 56-57 37.206375210100255 39.0 36.0 41.0 31.0 41.0 58-59 37.067788354779125 39.0 35.0 41.0 31.0 41.0 60-61 36.848758159061234 39.0 35.0 40.0 31.0 41.0 62-63 36.63346036063123 38.0 35.0 40.0 31.0 41.0 64-65 36.33322395234252 38.0 35.0 40.0 30.5 41.0 66-67 36.050840687015366 37.0 34.5 40.0 30.0 41.0 68-69 35.74487267028387 37.0 34.0 39.5 30.0 41.0 70-71 35.45380633391305 36.0 34.0 39.0 29.0 41.0 72-73 35.16457518262253 36.0 34.0 39.0 29.0 40.5 74-75 34.80389474787922 35.5 34.0 38.5 29.0 40.0 76-77 33.521879889262024 34.5 31.5 36.5 27.5 39.0 78-79 34.19883679491689 35.0 33.0 37.0 29.0 39.0 80-81 34.124199394713216 35.0 33.0 36.5 29.0 39.0 82-83 33.854157651640364 35.0 33.0 36.0 29.0 38.0 84-85 33.68219099541281 35.0 33.0 36.0 29.0 37.0 86-87 33.44794700305352 35.0 33.0 35.0 29.0 37.0 88-89 33.35020818457691 35.0 33.0 35.0 29.0 36.5 90-91 33.22135931387299 35.0 33.0 35.0 29.0 36.0 92-93 33.10540992089834 35.0 33.0 35.0 29.0 36.0 94-95 33.07049148733805 35.0 33.0 35.0 29.0 36.0 96-97 33.1270269095383 35.0 33.0 35.0 29.0 35.0 98-99 33.258376496428426 35.0 33.0 35.0 29.0 35.0 100 32.09744706670512 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 4.0 20 38.0 21 252.0 22 1180.0 23 4215.0 24 11579.0 25 24888.0 26 45041.0 27 72228.0 28 104098.0 29 140014.0 30 175895.0 31 218336.0 32 267724.0 33 336863.0 34 444635.0 35 608366.0 36 926174.0 37 1564114.0 38 1896839.0 39 866338.0 40 31847.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.313896770421266 20.337570305615703 14.731078153580782 23.617454770382253 2 14.65546453413781 21.35250842013785 41.1160973295719 22.87592971615244 3 17.94246724669405 26.449199675118518 30.87975987605206 24.72857320213537 4 12.609736962011938 18.438134998409055 39.07215254908846 29.87997549049055 5 13.122560853590304 38.06059915493093 35.66704634961138 13.149793641867388 6 29.635681360357868 38.25860529626057 18.934603714485142 13.171109628896415 7 26.349014536082088 32.97397162958396 23.214440508953423 17.462573325380532 8 24.62359519571241 36.44527365787118 21.19041648725711 17.740714659159305 9 25.752360680969566 16.87820523006474 21.14447730551455 36.22495678345115 10-11 24.149225612749078 26.750732188053266 29.028674978136575 20.071367221061077 12-13 25.09606889895879 24.331419179105783 29.048912248341342 21.52359967359408 14-15 22.173072002760485 25.691353401841198 26.760531083329557 25.375043512068757 16-17 21.704237617786426 28.887376803784825 27.32103161525355 22.0873539631752 18-19 21.727587034603 28.036777011222213 29.076936731303825 21.158699222870954 20-21 22.603728711278386 27.187603010724708 28.949037552409308 21.2596307255876 22-23 22.320466838258984 27.076316674717393 28.802675532564027 21.8005409544596 24-25 22.060674466439348 27.26765498880447 28.824904306679205 21.846766238076984 26-27 22.003182963382734 27.450916386676592 28.70600276435994 21.839897885580733 28-29 21.95252462599014 27.53546341123019 28.740252222342296 21.77175974043738 30-31 22.237057090182187 27.316220261214514 28.671872572476154 21.774850076127148 32-33 22.068114540479336 27.47362510382879 28.582937131938323 21.87532322375355 34-35 22.158695776945216 27.52569457295441 28.56229146041426 21.75331818968611 36-37 22.1564351788792 27.468624098901124 28.521393565274284 21.853547156945393 38-39 21.992860744171384 27.606571981711593 28.58086056264157 21.819706711475455 40-41 22.264023670695508 27.452447451550952 28.43753505029075 21.845993827462788 42-43 22.171718017597502 27.543343515011 28.22674568130464 22.05819278608686 44-45 22.24349424281669 27.641802232450697 28.048706317630067 22.06599720710255 46-47 22.30642942883453 27.641780024518248 27.78781800568651 22.263972540960715 48-49 22.223485928201146 27.75546760944702 27.80934709497855 22.211699367373285 50-51 22.230527985016337 27.87127180359374 27.711521924234983 22.186678287154944 52-53 22.380796988986148 27.73500859601293 27.62044542763912 22.263748987361808 54-55 22.334495548541216 27.642909020474598 27.674933605629803 22.347661825354383 56-57 22.3390154835184 27.741969277823504 27.652045724321805 22.266969514336292 58-59 22.316277151400225 27.76529118048061 27.64086978098092 22.27756188713824 60-61 22.3719927213105 27.744488906494823 27.697680182518013 22.18583818967666 62-63 22.363683400240404 27.820858299267908 27.585280720106088 22.2301775803856 64-65 22.30642003221866 27.8072559748475 27.572833495932507 22.313490497001325 66-67 22.381376659766996 27.803449131554924 27.455206081354017 22.359968127324066 68-69 22.308630211524687 27.787360778759435 27.53119260128905 22.37281640842683 70-71 22.321984777711705 27.593510816166074 27.59681199980252 22.487692406319702 72-73 22.343793567570447 27.60688254904639 27.54540996256146 22.503913920821702 74-75 22.23816613383972 27.772057232825343 27.509306944377677 22.48046968895726 76-77 22.388656924279523 27.675995839583457 27.425009736039343 22.510337500097684 78-79 22.335877488101342 27.675015081724936 27.427935417255945 22.561172012917773 80-81 22.36535081477651 27.698517965264685 27.405884236906047 22.53024698305276 82-83 22.377638003670736 27.671972369668197 27.532992760374487 22.41739686628658 84-85 22.451722714386047 27.641776294786986 27.48635307862253 22.420147912204442 86-87 22.342920125518397 27.651290250932405 27.533450132229863 22.47233949131934 88-89 22.363514087348445 27.643655440157723 27.515735119080077 22.477095353413763 90-91 22.445339609477276 27.57643266525363 27.593453874341172 22.38477385092792 92-93 22.451258992140733 27.535799653037234 27.607069542807146 22.405871812014887 94-95 22.289912682705115 27.612774841760114 27.65722357464131 22.440088900893464 96-97 22.30911919225946 27.735140358523918 27.749950742054775 22.205789707161845 98-99 23.37654021001665 29.726756151171635 27.950687046915856 18.94601659189586 100 22.419713408838142 30.776612080413564 21.655585180031252 25.148089330717045 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1496.0 1 1300.5 2 1736.5 3 2534.0 4 3379.5 5 5327.5 6 7116.0 7 8591.5 8 9843.0 9 10051.5 10 9325.5 11 8480.0 12 9077.0 13 11898.5 14 18476.0 15 28066.5 16 36399.0 17 41692.0 18 43574.0 19 41886.0 20 38307.5 21 34891.5 22 32967.0 23 34361.0 24 39626.5 25 48788.5 26 61442.5 27 75533.5 28 90518.0 29 108104.5 30 125982.5 31 143303.0 32 161478.0 33 178634.0 34 195958.5 35 212365.5 36 228948.5 37 246164.5 38 259046.5 39 269309.5 40 281902.5 41 292214.0 42 298826.0 43 305367.0 44 310133.5 45 314811.5 46 317372.0 47 317807.5 48 316956.0 49 312333.0 50 306564.0 51 298533.0 52 286944.5 53 272449.5 54 255629.5 55 237983.5 56 219318.0 57 198972.0 58 177074.5 59 153585.5 60 128703.0 61 105096.5 62 83917.0 63 65024.5 64 49384.5 65 36843.5 66 27586.0 67 21342.0 68 16329.0 69 11960.0 70 8555.5 71 6126.5 72 4383.0 73 3032.0 74 1999.0 75 1307.5 76 908.5 77 597.5 78 381.0 79 247.0 80 169.0 81 116.5 82 80.0 83 57.5 84 46.5 85 37.5 86 26.0 87 16.5 88 11.0 89 7.5 90 5.0 91 3.5 92 2.5 93 1.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 6.459390008796397E-6 12-13 6.459390008796397E-6 14-15 6.459390008796397E-6 16-17 9.043146012314957E-4 18-19 0.0016406850622342848 20-21 0.0 22-23 0.00339805069465265 24-25 2.519981840623167E-4 26-27 0.0018874289539745925 28-29 0.005160564363974993 30-31 0.0017477866224411918 32-33 0.005835925294709364 34-35 0.01128268754137175 36-37 6.129055079014278E-4 38-39 1.964607980159031E-5 40-41 0.0023892866755011034 42-43 0.005931108192482201 44-45 0.0014871224201176854 46-47 0.0017141103276693303 48-49 0.0032107186523110064 50-51 0.010170076279664682 52-53 0.006184243932937538 54-55 0.009393732639725903 56-57 0.01792306519050716 58-59 0.01182690263018964 60-61 0.01637225206151646 62-63 0.01412127636703737 64-65 0.010475524270950833 66-67 0.012915777200384523 68-69 0.00881624857967535 70-71 0.008782735029157648 72-73 0.006278543568331384 74-75 0.010980838211995072 76-77 0.011386815509009619 78-79 0.00663781796374433 80-81 0.003945136712163368 82-83 0.0022344749854053504 84-85 6.34509563367796E-5 86-87 0.003886364625474092 88-89 5.126877607027435E-4 90-91 4.957609136807537E-4 92-93 0.001369748014264539 94-95 0.0011568362294371289 96-97 3.9599799149818714E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 161.0 20-21 535.0 22-23 1207.0 24-25 2595.0 26-27 3154.0 28-29 6040.0 30-31 12449.0 32-33 16327.0 34-35 22566.0 36-37 31482.0 38-39 37604.0 40-41 41578.0 42-43 52616.0 44-45 59256.0 46-47 58085.0 48-49 52413.0 50-51 47084.0 52-53 44681.0 54-55 48680.0 56-57 52574.0 58-59 53526.0 60-61 54146.0 62-63 54472.0 64-65 57936.0 66-67 62382.0 68-69 64572.0 70-71 65286.0 72-73 63913.0 74-75 66478.0 76-77 65821.0 78-79 71727.0 80-81 73930.0 82-83 72516.0 84-85 76216.0 86-87 80740.0 88-89 90336.0 90-91 98623.0 92-93 111745.0 94-95 131617.0 96-97 309171.0 98-99 549331.0 100-101 4875098.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.43349021283981 #Duplication Level Percentage of deduplicated Percentage of total 1 89.72924965313443 76.65882972046522 2 7.296433684228494 12.467195915003396 3 1.7056988744228865 4.371714242821786 4 0.6104285229347264 2.086041569591288 5 0.26445287175082677 1.129656591524082 6 0.1289305007978954 0.6608989606832117 7 0.08183004090112402 0.4893718198909722 8 0.049256560562597106 0.3366527907794234 9 0.02995000905619122 0.23028604250189189 >10 0.10096660997065564 1.318716582740619 >50 0.0020494835326813486 0.11354021509989365 >100 7.056571582252576E-4 0.10661934884798922 >500 4.753154928623217E-5 0.030476200050257186 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2918780017592794E-5 2 0.0 1.2918780017592794E-5 0.0 0.0 1.2918780017592794E-5 3 0.0 1.2918780017592794E-5 0.0 0.0 1.2918780017592794E-5 4 0.0 5.1675120070371176E-5 0.0 0.0 1.2918780017592794E-5 5 0.0 5.1675120070371176E-5 0.0 0.0 1.2918780017592794E-5 6 5.1675120070371176E-5 5.1675120070371176E-5 0.0 0.0 2.5837560035185588E-5 7 5.1675120070371176E-5 5.1675120070371176E-5 0.0 2.5837560035185588E-5 2.5837560035185588E-5 8 5.1675120070371176E-5 5.1675120070371176E-5 0.0 2.5837560035185588E-5 3.875634005277838E-5 9 5.1675120070371176E-5 1.1626902015833515E-4 0.0 3.875634005277838E-5 3.875634005277838E-5 10-11 5.813451007916757E-5 1.1626902015833515E-4 0.0 3.875634005277838E-5 3.875634005277838E-5 12-13 6.459390008796397E-5 1.1626902015833515E-4 0.0 3.875634005277838E-5 3.875634005277838E-5 14-15 6.459390008796397E-5 1.679441402287063E-4 0.0 3.875634005277838E-5 4.521573006157478E-5 16-17 7.751268010555676E-5 1.8086292024629912E-4 0.0 4.521573006157478E-5 5.1675120070371176E-5 18-19 9.043146012314956E-5 1.873223102550955E-4 0.0 7.105329009676037E-5 1.0335024014074235E-4 20-21 9.043146012314956E-5 1.9378170026389192E-4 0.0 8.397207011435315E-5 1.1626902015833515E-4 22-23 9.043146012314956E-5 2.196192602990775E-4 0.0 2.131598702902811E-4 1.4210658019352075E-4 24-25 9.043146012314956E-5 2.648349903606523E-4 0.0 7.622080210379749E-4 1.6794414022870634E-4 26-27 9.043146012314956E-5 2.842131603870415E-4 0.0 0.0021768144329643857 1.6794414022870634E-4 28-29 9.043146012314956E-5 2.971319404046343E-4 0.0 0.007841699470678826 1.7440353023750273E-4 30-31 9.043146012314956E-5 3.6172584049259823E-4 0.0 0.008920417602147825 1.8086292024629912E-4 32-33 9.043146012314956E-5 3.7464462051019107E-4 0.0 0.011129528985156192 2.067004802814847E-4 34-35 9.043146012314956E-5 4.909136406685262E-4 0.0 0.014113767169220127 2.067004802814847E-4 36-37 9.043146012314956E-5 6.136420508356577E-4 0.0 0.019081038085984558 2.067004802814847E-4 38-39 9.043146012314956E-5 6.459390008796398E-4 0.0 0.03327877732531904 2.196192602990775E-4 40-41 9.043146012314956E-5 6.976141209500109E-4 0.0 0.049168876746958176 2.325380403166703E-4 42-43 9.043146012314956E-5 7.169922909764002E-4 0.0 0.059833329651481026 2.454568203342631E-4 44-45 9.043146012314956E-5 8.074237510995497E-4 0.0 0.07320426696968957 2.583756003518559E-4 46-47 9.043146012314956E-5 8.655582611787172E-4 0.0 0.08697568646844349 2.777537703782451E-4 48-49 9.689085013194596E-5 8.655582611787172E-4 0.0 0.10047581158682796 2.842131603870415E-4 50-51 1.1626902015833515E-4 0.0010335024014074235 0.0 0.11445393156586336 2.842131603870415E-4 52-53 1.1626902015833515E-4 0.0010335024014074235 0.0 0.1514985332663107 2.906725503958379E-4 54-55 1.2272841016713155E-4 0.0010657993514514054 0.0 0.19605540554698825 2.971319404046343E-4 56-57 1.2918780017592794E-4 0.0010851775214777946 0.0 0.240257011377182 3.1005072042222706E-4 58-59 1.2918780017592794E-4 0.0010851775214777946 0.0 0.268555599005719 3.229695004398199E-4 60-61 1.4210658019352075E-4 0.001136852641548166 0.0 0.2895809134843513 3.3588828045741267E-4 62-63 1.5502536021111353E-4 0.0012079059316449264 0.0 0.3064270026272923 3.3588828045741267E-4 64-65 1.5502536021111353E-4 0.0013435531218296507 0.0 0.314081379787716 3.3588828045741267E-4 66-67 1.6794414022870634E-4 0.0013435531218296507 0.0 0.3208895768569874 3.4880706047500545E-4 68-69 1.6794414022870634E-4 0.001382309461882429 0.0 0.3274264795458894 3.8756340052778385E-4 70-71 1.6794414022870634E-4 0.001414606411926411 0.0 0.3325358570428473 4.198603505717658E-4 72-73 1.8086292024629912E-4 0.001446903361970393 0.0 0.3362047905678437 4.39238520598155E-4 74-75 1.8086292024629912E-4 0.0014533627519791893 0.0 0.33927946021203076 4.521573006157478E-4 76-77 1.8086292024629912E-4 0.001479200312014375 0.0 0.3422249420560419 4.521573006157478E-4 78-79 1.8086292024629912E-4 0.0014985784820407643 0.0 0.34418859661871604 4.521573006157478E-4 80-81 1.8086292024629912E-4 0.0014985784820407643 0.0 0.3447376447694637 4.6507608063334064E-4 82-83 1.8086292024629912E-4 0.0014985784820407643 0.0 0.3451575051200355 4.909136406685262E-4 84-85 1.8086292024629912E-4 0.0014985784820407643 0.0 0.3453189898702554 4.973730306773226E-4 86-87 1.873223102550955E-4 0.0015373348220935426 0.0 0.3453965025503609 5.03832420686119E-4 88 1.9378170026389192E-4 0.0015890099421639137 0.0 0.34540942133037855 5.03832420686119E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9720 0.0 51.501923 1 GTATCAA 17490 0.0 37.94192 1 TCAACGC 21545 0.0 30.263275 4 ATCAACG 21700 0.0 30.007572 3 TATCAAC 22230 0.0 29.40792 2 CAACGCA 22185 0.0 29.332224 5 AACGCAG 22820 0.0 28.628796 6 ACGCAGA 26270 0.0 24.820034 7 CGCAGAG 26625 0.0 24.553545 8 GTGGTAT 4600 0.0 21.354849 1 GTACATG 24315 0.0 21.223166 1 TACATGG 24110 0.0 20.83428 2 GCAGAGT 31070 0.0 20.83372 9 ACATGGG 24685 0.0 19.897163 3 GAGTACT 17190 0.0 19.427504 12-13 TGGTATC 4650 0.0 19.372478 2 CAGAGTA 30340 0.0 18.662937 10-11 AGAGTAC 28040 0.0 18.63335 10-11 CATGGGG 19200 0.0 17.89576 4 GTACTTT 18925 0.0 17.499947 14-15 >>END_MODULE