##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139369_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7855297 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.05058752075192 33.0 31.0 34.0 30.0 34.0 2 32.229605831580905 33.0 31.0 34.0 30.0 34.0 3 32.243734896338104 34.0 31.0 34.0 30.0 34.0 4 35.99101230672755 37.0 35.0 37.0 35.0 37.0 5 35.859659411986584 37.0 35.0 37.0 35.0 37.0 6 35.881517783477825 37.0 35.0 37.0 35.0 37.0 7 35.82647823500499 37.0 35.0 37.0 35.0 37.0 8 35.81560111603673 37.0 35.0 37.0 35.0 37.0 9 37.588978112476205 39.0 37.0 39.0 35.0 39.0 10-11 37.468304190153475 39.0 37.0 39.0 34.5 39.0 12-13 37.44611610483983 39.0 37.0 39.0 34.0 39.0 14-15 38.68881144786759 40.0 38.0 41.0 34.0 41.0 16-17 38.65072822835343 40.0 38.0 41.0 34.0 41.0 18-19 38.673682739175874 40.0 38.0 41.0 34.0 41.0 20-21 38.659162905798446 40.0 38.0 41.0 34.0 41.0 22-23 38.579044887800976 40.0 38.0 41.0 34.0 41.0 24-25 38.51985261078272 40.0 38.0 41.0 34.0 41.0 26-27 38.349955772052596 40.0 38.0 41.0 34.0 41.0 28-29 38.2425827122924 40.0 38.0 41.0 33.5 41.0 30-31 38.091583724778594 40.0 37.5 41.0 33.0 41.0 32-33 37.916311086309676 40.0 37.0 41.0 33.0 41.0 34-35 38.00116071890366 40.0 37.0 41.0 33.0 41.0 36-37 37.978042887358676 40.0 37.0 41.0 33.0 41.0 38-39 37.94586532391881 40.0 37.0 41.0 33.0 41.0 40-41 37.87600686748682 40.0 37.0 41.0 33.0 41.0 42-43 37.77555187209896 40.0 37.0 41.0 33.0 41.0 44-45 37.825977190795086 40.0 37.0 41.0 33.0 41.0 46-47 37.825778225312376 40.0 37.0 41.0 33.0 41.0 48-49 37.77502088821985 40.0 37.0 41.0 33.0 41.0 50-51 37.687392945280806 40.0 37.0 41.0 32.0 41.0 52-53 37.503162345089066 40.0 36.0 41.0 32.0 41.0 54-55 37.38121966796812 39.0 36.0 41.0 31.5 41.0 56-57 37.220117362911935 39.0 36.0 41.0 31.0 41.0 58-59 37.08819962033816 39.0 35.0 41.0 31.0 41.0 60-61 36.87895647885452 39.0 35.0 40.5 31.0 41.0 62-63 36.67296663001925 38.5 35.0 40.0 31.0 41.0 64-65 36.376771251694734 38.0 35.0 40.0 30.0 41.0 66-67 36.09967900381911 37.5 34.5 40.0 30.0 41.0 68-69 35.80566847564825 37.0 34.0 40.0 30.0 41.0 70-71 35.51629374638925 36.5 34.0 39.0 29.0 41.0 72-73 35.235646327501556 36.0 34.0 39.0 29.0 40.5 74-75 34.87293862792738 35.5 34.0 38.5 29.0 40.0 76-77 33.58166779454901 34.5 31.5 36.5 27.5 39.0 78-79 34.260986377697805 35.0 33.0 37.0 29.0 39.0 80-81 34.1806172781325 35.0 33.5 37.0 29.0 39.0 82-83 33.89539403816769 35.0 33.0 36.0 29.0 38.5 84-85 33.71402518313786 35.0 33.0 36.0 29.0 37.0 86-87 33.474954598012104 35.0 33.0 35.5 29.0 37.0 88-89 33.367385827979085 35.0 33.0 35.0 29.0 36.5 90-91 33.23546269114496 35.0 33.0 35.0 29.0 36.0 92-93 33.10929214290339 35.0 33.0 35.0 29.0 36.0 94-95 33.07543733778111 35.0 33.0 35.0 29.0 36.0 96-97 33.131550524690645 35.0 33.0 35.0 29.0 35.0 98-99 33.26148657709835 35.0 33.0 35.0 29.0 35.0 100 32.08566996560313 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 6.0 20 46.0 21 254.0 22 1219.0 23 4498.0 24 11957.0 25 26139.0 26 47808.0 27 75882.0 28 107977.0 29 143476.0 30 180661.0 31 222140.0 32 272087.0 33 343025.0 34 447662.0 35 610141.0 36 921590.0 37 1555232.0 38 1951712.0 39 899745.0 40 32039.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.082342271718055 20.506366595686963 14.834194047659816 23.577097084935172 2 14.443527724031313 21.45629885159021 41.55289099826525 22.54728242611323 3 17.758870224766802 26.686693068384304 31.055210261305206 24.49922644554369 4 12.424202420354062 18.617628334103724 39.393660099675415 29.564509145866797 5 12.881944501907439 38.207339582449904 35.95671812281572 12.953997792826929 6 29.32871920692496 38.62537597241709 19.097622916103617 12.94828190455434 7 26.05556479914127 33.12452730940663 23.49058221477813 17.329325676673967 8 24.317374632684164 36.8275572521319 21.32223644758435 17.532831667599584 9 25.625689264199686 16.9570163928875 21.294535394396927 36.12275894851589 10-11 23.89059891688373 26.959177991615086 29.329890391158987 19.820332700342203 12-13 24.84048025173332 24.546201117538903 29.279866821076272 21.3334518096515 14-15 21.957323828748933 25.96992195202804 26.94523835317748 25.127515866045545 16-17 21.45215945742105 29.071590624610334 27.599023096154273 21.877226821814343 18-19 21.455743277112344 28.285341009813607 29.32082563537037 20.938090077703674 20-21 22.33636093515239 27.431285711048492 29.187688143008927 21.04466521079019 22-23 22.039210768144123 27.342528751730388 29.05412687716627 21.56413360295922 24-25 21.808597646736114 27.487634549743905 29.07585494813168 21.627912855388303 26-27 21.765822513487638 27.639652622614918 28.979635463567853 21.614889400329588 28-29 21.66554978259796 27.76543203975534 28.981749062757412 21.587269114889292 30-31 22.00286084886734 27.571590433711275 28.886899636691076 21.538649080730313 32-33 21.826090751501265 27.706959382086875 28.81758792207038 21.64936194434148 34-35 21.93674848914881 27.745576002530033 28.80150346681443 21.51617204150673 36-37 21.899913979331785 27.73024725273137 28.744540841638138 21.625297926298703 38-39 21.762260412501984 27.850515024344013 28.791422526640115 21.59580203651389 40-41 22.023299064385178 27.68988532626463 28.65327124208153 21.63354436726867 42-43 21.890486167141002 27.81219637123168 28.456637330578978 21.840680131048344 44-45 22.01906597242919 27.89816093940004 28.270794104355666 21.8119789838151 46-47 22.031775990637303 27.836144327737806 28.072407964775575 22.059671716849316 48-49 21.959256539030996 27.964894853230625 28.084497274974744 21.991351332763635 50-51 22.00499448293225 28.05180675581117 27.975593114978594 21.967605646277985 52-53 22.129820063648154 27.986677401827386 27.854677318390696 22.028825216133765 54-55 22.140236890383797 27.860666410753982 27.9021639291888 22.096932769673426 56-57 22.078992975726454 27.995955263391625 27.87591090502862 22.049140855853302 58-59 22.070180664425944 28.014516006090478 27.9034095083503 22.011893821133274 60-61 22.120792002010013 28.01091744889747 27.925393362931366 21.94289718616115 62-63 22.068493926101308 28.0566808692632 27.881092330388224 21.99373287424727 64-65 22.06316511775776 28.020654059295314 27.80412910765903 22.11205171528789 66-67 22.142668663265404 28.05592370053973 27.67532680007749 22.12608083611738 68-69 22.090306616082792 28.021293370591838 27.75661996935881 22.13178004396656 70-71 22.060754060165436 27.828246270302635 27.841291443190947 22.26970822634098 72-73 22.082554836277847 27.879237159625227 27.77596715447413 22.2622408496228 74-75 22.01503997641944 27.968262038981617 27.76016359014038 22.25653439445857 76-77 22.103452784125633 27.84451551660799 27.74914329072352 22.302888408542856 78-79 22.102196452543485 27.931086320239203 27.667101617687074 22.29961560953024 80-81 22.126623356885002 27.938525218038368 27.632297278730423 22.30255414634621 82-83 22.14070222523587 27.90945364572961 27.774531239947976 22.175312889086545 84-85 22.224552852076755 27.88132063058862 27.713577477263012 22.18054904007161 86-87 22.05824450212141 27.914780904522058 27.777794829550867 22.24917976380566 88-89 22.14256571847639 27.86916530907868 27.75829872507416 22.229970247370765 90-91 22.206753394298957 27.811334204085757 27.830474348482113 22.15143805313317 92-93 22.205322323503587 27.76078867218756 27.8507174332268 22.183171571082053 94-95 22.046368874699123 27.877879394849252 27.898264565426867 22.177487165024758 96-97 22.064694789785342 28.003346404128738 27.984576122287397 21.947382683798523 98-99 23.08947049761195 29.974870506470403 28.210356781388708 18.725302214528945 100 22.14999430502068 31.017448733635472 21.97010527576054 24.862451685583306 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1388.0 1 1228.0 2 1688.0 3 2478.0 4 3339.5 5 5345.0 6 7168.5 7 8671.0 8 9950.0 9 10275.0 10 9674.0 11 8732.0 12 9226.5 13 11844.5 14 18114.0 15 27757.0 16 36281.5 17 41779.5 18 44006.5 19 42801.0 20 39598.0 21 36340.5 22 34706.5 23 36117.0 24 41447.5 25 50870.5 26 63939.0 27 79243.5 28 95702.5 29 114554.5 30 132766.5 31 151659.5 32 173164.5 33 192454.0 34 211038.0 35 228307.5 36 245385.0 37 262433.5 38 275191.0 39 285316.0 40 297166.0 41 307869.5 42 314057.0 43 318615.0 44 321978.5 45 324992.5 46 325444.0 47 322870.5 48 319763.5 49 312734.0 50 303016.0 51 291028.0 52 275546.5 53 258533.0 54 241375.0 55 223645.0 56 204868.5 57 185124.5 58 163992.0 59 141359.5 60 118129.5 61 96433.5 62 76532.0 63 59572.5 64 45275.5 65 33784.0 66 25640.5 67 19809.5 68 15310.5 69 11330.0 70 8190.5 71 5931.5 72 4213.0 73 2930.5 74 2011.5 75 1344.5 76 865.0 77 557.5 78 346.0 79 225.0 80 157.5 81 113.0 82 85.5 83 57.5 84 36.0 85 25.0 86 23.0 87 18.0 88 10.0 89 5.5 90 4.0 91 3.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 9.102138340536328E-4 18-19 0.0017122204290938969 20-21 0.0 22-23 0.0032211468161159958 24-25 2.928948112219718E-4 26-27 0.0018026292908787595 28-29 0.005110957159281578 30-31 0.0016393732287034732 32-33 0.0053990808911384275 34-35 0.011347468317061585 36-37 6.231015476943122E-4 38-39 3.225311418331341E-5 40-41 0.0025799741756253242 42-43 0.005983406020636102 44-45 0.0017658472150915475 46-47 0.0019580206977340606 48-49 0.0028322053603451534 50-51 0.01048012245506463 52-53 0.006196612855811637 54-55 0.009914954141299778 56-57 0.018170526080481485 58-59 0.011738618084439288 60-61 0.0160076237348394 62-63 0.014442772070347967 64-65 0.01043537555698465 66-67 0.012815578290367776 68-69 0.008553297177863236 70-71 0.008561065632860148 72-73 0.005999636080468404 74-75 0.010227022209437626 76-77 0.01177783038823092 78-79 0.006922157148600375 80-81 0.004027452943011845 82-83 0.0022596724935216956 84-85 3.109809068607519E-5 86-87 0.003840436475049086 88-89 5.024140196159978E-4 90-91 6.396200236044078E-4 92-93 0.0016386347586875639 94-95 0.001309738451108345 96-97 4.4834647663903615E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 126.0 20-21 576.0 22-23 1231.0 24-25 2894.0 26-27 3297.0 28-29 5994.0 30-31 12212.0 32-33 16136.0 34-35 22122.0 36-37 30632.0 38-39 37015.0 40-41 40514.0 42-43 51345.0 44-45 57988.0 46-47 56838.0 48-49 52096.0 50-51 46245.0 52-53 43826.0 54-55 47347.0 56-57 51545.0 58-59 52474.0 60-61 53639.0 62-63 54340.0 64-65 57330.0 66-67 61981.0 68-69 64032.0 70-71 65274.0 72-73 64032.0 74-75 66197.0 76-77 65560.0 78-79 72129.0 80-81 74831.0 82-83 73184.0 84-85 76848.0 86-87 81642.0 88-89 91460.0 90-91 100903.0 92-93 113170.0 94-95 134627.0 96-97 313055.0 98-99 560541.0 100-101 4978069.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.46867878497278 #Duplication Level Percentage of deduplicated Percentage of total 1 89.81758642744168 76.76590443608544 2 7.1431935216203835 12.21038625196542 3 1.7522477867450696 4.492869097109815 4 0.6087427377277524 2.081137500541528 5 0.265610075821848 1.1350671126234895 6 0.14176575557049745 0.7269919095338288 7 0.08098564028479158 0.4845214972987341 8 0.050713050194263226 0.34675019178077476 9 0.03365084850759193 0.258848420574344 >10 0.10366487346422705 1.311871761871774 >50 0.001351726301111623 0.0736904500169824 >100 4.414571427753929E-4 0.06775416864424598 >500 2.3049589282990784E-5 0.01719825663849197 >1k 2.304958870493533E-5 0.027008945315057084 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.2730263413337522E-5 0.0 4 0.0 3.8190790240012565E-5 0.0 1.2730263413337522E-5 0.0 5 0.0 3.8190790240012565E-5 0.0 1.2730263413337522E-5 0.0 6 0.0 3.8190790240012565E-5 0.0 1.2730263413337522E-5 1.2730263413337522E-5 7 0.0 3.8190790240012565E-5 0.0 1.2730263413337522E-5 1.2730263413337522E-5 8 0.0 3.8190790240012565E-5 0.0 1.2730263413337522E-5 2.5460526826675045E-5 9 0.0 1.145723707200377E-4 0.0 2.5460526826675045E-5 2.5460526826675045E-5 10-11 0.0 1.145723707200377E-4 0.0 7.001644877335637E-5 2.5460526826675045E-5 12-13 1.2730263413337522E-5 1.145723707200377E-4 0.0 7.638158048002513E-5 2.5460526826675045E-5 14-15 1.2730263413337522E-5 1.59128292666719E-4 0.0 7.638158048002513E-5 3.8190790240012565E-5 16-17 1.2730263413337522E-5 1.6549342437338779E-4 0.0 1.145723707200377E-4 3.8190790240012565E-5 18-19 1.2730263413337522E-5 1.782236877867253E-4 0.0 1.7185855608005656E-4 5.7286185360018845E-5 20-21 1.2730263413337522E-5 2.0368421461340036E-4 0.0 2.546052682667504E-4 6.36513170666876E-5 22-23 1.2730263413337522E-5 2.2277960973340666E-4 0.0 4.8375000970682586E-4 6.36513170666876E-5 24-25 1.9095395120006283E-5 2.3550987314674415E-4 0.0 0.001094802653547027 6.36513170666876E-5 26-27 2.5460526826675045E-5 2.4187500485341293E-4 0.0 0.0024251151802407982 6.36513170666876E-5 28-29 2.5460526826675045E-5 2.4187500485341293E-4 0.0 0.007370822516322425 8.274671218669389E-5 30-31 2.5460526826675045E-5 2.800657950934255E-4 0.0 0.008160098847949352 8.911184389336265E-5 32-33 3.8190790240012565E-5 2.800657950934255E-4 0.0 0.009929605462403268 8.911184389336265E-5 34-35 3.8190790240012565E-5 3.18256585333438E-4 0.0 0.012596595647497478 1.0184210730670018E-4 36-37 3.8190790240012565E-5 3.628125072801194E-4 0.0 0.01734498390067237 1.0184210730670018E-4 38-39 3.8190790240012565E-5 4.073684292268007E-4 0.0 0.030495346006650034 1.0184210730670018E-4 40-41 3.8190790240012565E-5 4.4555921946681326E-4 0.0 0.045345198278308255 1.0184210730670018E-4 42-43 3.8190790240012565E-5 4.710197462934883E-4 0.0 0.05583493533089837 1.0184210730670018E-4 44-45 4.455592194668133E-5 5.474013267735135E-4 0.0 0.0680941789979424 1.0184210730670018E-4 46-47 5.092105365335009E-5 5.983223804268636E-4 0.0 0.08055074174789317 1.0820723901336894E-4 48-49 5.092105365335009E-5 5.983223804268636E-4 0.0 0.09359289661485747 1.145723707200377E-4 50-51 5.092105365335009E-5 7.383552779735762E-4 0.0 0.1066032258232884 1.145723707200377E-4 52-53 5.7286185360018845E-5 7.510855413869138E-4 0.0 0.14170056205385995 1.145723707200377E-4 54-55 7.001644877335637E-5 7.638158048002513E-4 0.0 0.18291478985454018 1.145723707200377E-4 56-57 7.638158048002513E-5 7.765460682135889E-4 0.0 0.2253320275477808 1.145723707200377E-4 58-59 7.638158048002513E-5 7.765460682135889E-4 0.0 0.25389237351560356 1.145723707200377E-4 60-61 7.638158048002513E-5 7.956414633335952E-4 0.0 0.2742926206354769 1.273026341333752E-4 62-63 7.638158048002513E-5 8.020065950402639E-4 0.0 0.2907719466240424 1.273026341333752E-4 64-65 7.638158048002513E-5 8.911184389336265E-4 0.0 0.2974871605745779 1.273026341333752E-4 66-67 7.638158048002513E-5 8.911184389336265E-4 0.0 0.30378864096417996 1.3366776584004396E-4 68-69 7.638158048002513E-5 9.038487023469641E-4 0.0 0.30992462792940867 1.5276316096005026E-4 70-71 7.638158048002513E-5 9.165789657603016E-4 0.0 0.31467301618258353 1.6549342437338779E-4 72-73 7.638158048002513E-5 9.293092291736392E-4 0.0 0.3186830491577849 1.6549342437338779E-4 74-75 7.638158048002513E-5 9.484046242936453E-4 0.0 0.3218974406696526 1.6549342437338779E-4 76-77 7.638158048002513E-5 0.001012055941360333 0.0 0.32481903612301355 1.6549342437338779E-4 78-79 8.911184389336265E-5 0.0010311513364803394 0.0 0.32669674997648085 1.6549342437338779E-4 80-81 8.911184389336265E-5 0.0010311513364803394 0.0 0.3273141677520277 1.6549342437338779E-4 82-83 8.911184389336265E-5 0.001037516468187008 0.0 0.32775336183978787 1.6549342437338779E-4 84-85 8.911184389336265E-5 0.0010438815998936768 0.0 0.3279315855275746 1.6549342437338779E-4 86-87 8.911184389336265E-5 0.0010438815998936768 0.0 0.3280143322397613 1.6549342437338779E-4 88 8.911184389336265E-5 0.0010820723901336894 0.0 0.32802069737146794 1.6549342437338779E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9675 0.0 51.43003 1 GTATCAA 17425 0.0 37.32709 1 TCAACGC 21200 0.0 30.052622 4 ATCAACG 21320 0.0 29.943878 3 CAACGCA 21695 0.0 29.446087 5 TATCAAC 22530 0.0 28.716822 2 AACGCAG 22295 0.0 28.69215 6 ACGCAGA 25755 0.0 24.804226 7 CGCAGAG 26040 0.0 24.532751 8 GCAGAGT 30445 0.0 20.757553 9 GTACATG 23120 0.0 20.537691 1 TACATGG 22705 0.0 20.364723 2 GTGGTAT 4690 0.0 20.321905 1 GAGTACT 17655 0.0 19.794844 12-13 TGGTATC 4610 0.0 19.743279 2 ACATGGG 22730 0.0 19.54903 3 AGAGTAC 27575 0.0 18.784468 10-11 CAGAGTA 30020 0.0 18.641783 10-11 GTACTTT 19735 0.0 17.709494 14-15 CATGGGG 17110 0.0 17.187983 4 >>END_MODULE