##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139367_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10343077 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.04159468212409 33.0 31.0 34.0 30.0 34.0 2 32.22135550184921 33.0 31.0 34.0 30.0 34.0 3 32.23850349368955 34.0 31.0 34.0 30.0 34.0 4 35.988379666901835 37.0 35.0 37.0 35.0 37.0 5 35.85398996836241 37.0 35.0 37.0 35.0 37.0 6 35.87389052600111 37.0 35.0 37.0 35.0 37.0 7 35.815410733188976 37.0 35.0 37.0 35.0 37.0 8 35.8020540695965 37.0 35.0 37.0 33.0 37.0 9 37.57549982466533 39.0 37.0 39.0 35.0 39.0 10-11 37.453273286083046 39.0 37.0 39.0 34.0 39.0 12-13 37.43524552703224 39.0 37.0 39.0 34.0 39.0 14-15 38.68420625699683 40.0 38.0 41.0 34.0 41.0 16-17 38.64219424258371 40.0 38.0 41.0 34.0 41.0 18-19 38.6591144008693 40.0 38.0 41.0 34.0 41.0 20-21 38.64192066751069 40.0 38.0 41.0 34.0 41.0 22-23 38.56468592985014 40.0 38.0 41.0 34.0 41.0 24-25 38.50757905086945 40.0 38.0 41.0 34.0 41.0 26-27 38.34030144746194 40.0 38.0 41.0 34.0 41.0 28-29 38.23567175950812 40.0 38.0 41.0 33.5 41.0 30-31 38.08673075255817 40.0 37.5 41.0 33.0 41.0 32-33 37.91426049489672 40.0 37.0 41.0 33.0 41.0 34-35 38.0065328543793 40.0 37.0 41.0 33.0 41.0 36-37 37.981522127637135 40.0 37.0 41.0 33.0 41.0 38-39 37.947584477460765 40.0 37.0 41.0 33.0 41.0 40-41 37.87841013955344 40.0 37.0 41.0 33.0 41.0 42-43 37.781772016514 40.0 37.0 41.0 33.0 41.0 44-45 37.83949563339794 40.0 37.0 41.0 33.0 41.0 46-47 37.83978863035667 40.0 37.0 41.0 33.0 41.0 48-49 37.79153296092237 40.0 37.0 41.0 33.0 41.0 50-51 37.703208929052096 40.0 37.0 41.0 32.5 41.0 52-53 37.51968649332689 40.0 36.0 41.0 32.0 41.0 54-55 37.401963306321434 39.0 36.0 41.0 31.5 41.0 56-57 37.24320257067874 39.0 36.0 41.0 31.0 41.0 58-59 37.11171183968933 39.0 35.5 41.0 31.0 41.0 60-61 36.9023303286244 39.0 35.0 40.5 31.0 41.0 62-63 36.69733384844042 38.5 35.0 40.0 31.0 41.0 64-65 36.4026489611142 38.0 35.0 40.0 30.5 41.0 66-67 36.12867778507348 37.5 34.5 40.0 30.0 41.0 68-69 35.833887974740946 37.0 34.0 40.0 30.0 41.0 70-71 35.54680025096265 36.5 34.0 39.0 29.0 41.0 72-73 35.25824610176259 36.0 34.0 39.0 29.0 40.5 74-75 34.8913962268078 35.5 34.0 38.5 29.0 40.0 76-77 33.59698266585487 34.5 31.5 36.5 27.5 39.0 78-79 34.27065233790526 35.0 33.0 37.0 29.0 39.0 80-81 34.18602276938093 35.0 33.5 37.0 29.0 39.0 82-83 33.90180186969005 35.0 33.0 36.0 29.0 38.5 84-85 33.7182823149205 35.0 33.0 36.0 29.0 37.0 86-87 33.47335055877467 35.0 33.0 35.5 29.0 37.0 88-89 33.36728342187115 35.0 33.0 35.0 29.0 36.5 90-91 33.23183935575524 35.0 33.0 35.0 29.0 36.0 92-93 33.105611603004824 35.0 33.0 35.0 29.0 36.0 94-95 33.07078029368364 35.0 33.0 35.0 29.0 36.0 96-97 33.127127340736436 35.0 33.0 35.0 29.0 35.0 98-99 33.25836818425704 35.0 33.0 35.0 29.0 35.0 100 32.09628960041851 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 10.0 20 47.0 21 282.0 22 1567.0 23 5697.0 24 15596.0 25 33778.0 26 61194.0 27 98361.0 28 140815.0 29 187354.0 30 236406.0 31 293104.0 32 360358.0 33 450743.0 34 588793.0 35 799653.0 36 1208911.0 37 2032886.0 38 2571230.0 39 1211649.0 40 44641.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.848907921694874 20.657073325471714 14.857019821084188 23.636998931749226 2 14.458241005070349 21.577660110236057 41.496935583095826 22.467163301597772 3 17.76471353737384 26.596563092395037 31.057111921336368 24.58161144889475 4 12.411877045873293 18.700933967715798 39.52624542967243 29.360943556738484 5 12.917703310146486 38.210708476790806 35.98384697319762 12.88774123986508 6 29.27759311856617 38.70381125461988 19.15977228053122 12.858823346282735 7 26.114424169906115 33.00350562990104 23.509648047674787 17.372422152518055 8 24.190228884499266 36.911143560083715 21.435661747466444 17.462965807950575 9 25.506065554766728 17.043796541396723 21.35423530154518 36.09590260229137 10-11 23.805599629587984 27.00682785209856 29.40834241106394 19.779230107249514 12-13 24.797554189993665 24.527634500237912 29.321382279247377 21.353429030521045 14-15 21.855280590099056 25.990829421457462 26.983527242425055 25.170362746018426 16-17 21.455922620374146 29.09014335422254 27.62193027329355 21.832003752109763 18-19 21.44728401298472 28.36629386754714 29.221124585163288 20.96529753430485 20-21 22.329355232923774 27.547865531514077 29.085541607138254 21.037237628423892 22-23 22.035917089980224 27.449390935178393 28.919666606971496 21.59502536786989 24-25 21.798816468470857 27.585671795322636 28.97966502439614 21.635846711810366 26-27 21.775225272511168 27.787199171037795 28.838258037706748 21.599317518744286 28-29 21.711655817531234 27.89035808197263 28.8295973411059 21.56838875939024 30-31 22.03692331693099 27.699856761115182 28.757130755324102 21.506089166629724 32-33 21.80458258722084 27.804368151420217 28.708138848200175 21.68291041315877 34-35 21.953189209408634 27.869103231724157 28.67200334279381 21.505704216073397 36-37 21.923721771554654 27.8053301593979 28.63993309781998 21.631014971227465 38-39 21.74631508214508 27.9532634446253 28.703455291958317 21.596966181271295 40-41 22.061358614611017 27.795308657142968 28.55940969771895 21.583923030527068 42-43 21.904089420151575 27.86812265512795 28.394899589904366 21.83288833481611 44-45 22.009258743855646 27.9906812953647 28.2176328463552 21.782427114424454 46-47 22.046822411583204 27.94520825353084 27.9637714640585 22.04419787082746 48-49 21.946231834058487 28.063463099215546 28.0135947385884 21.976710328137568 50-51 21.9610872909081 28.1806687575622 27.9008183786332 21.957425572896494 52-53 22.105328009528865 28.05523382797116 27.841774159536975 21.997664002963 54-55 22.116027595936245 27.95707971120956 27.88531933574303 22.041573357111165 56-57 22.091476509993573 28.052963023239467 27.846328630032392 22.009231836734568 58-59 22.061465346676243 28.08993755717862 27.895667613595286 21.95292948254985 60-61 22.134801968164 28.07515555701821 27.86673223185721 21.92331024296058 62-63 22.056486484133437 28.141421262040645 27.84569599992138 21.956396253904543 64-65 22.05276065122784 28.116684765183987 27.79132608767997 22.039228495908205 66-67 22.106567136937755 28.152199656259576 27.639674424365158 22.101558782437515 68-69 22.048968918849347 28.167668679867326 27.70745187614515 22.07591052513818 70-71 22.031142637793977 27.968619317740202 27.78291141889338 22.217326625572444 72-73 22.082595563864544 27.983059607562446 27.731802048190946 22.202542780382068 74-75 22.019111179686828 28.10709610817877 27.68907644121973 22.18471627091467 76-77 22.078826798708505 28.025092767820592 27.660063320713498 22.236017112757402 78-79 22.084015314459133 28.06427959068694 27.601883719012566 22.249821375841353 80-81 22.08871240684296 28.080613746389975 27.61008703536033 22.220586811406733 82-83 22.081261757107328 28.072242828948557 27.715108869024945 22.131386544919167 84-85 22.23009675951042 28.03797871396806 27.641573831749643 22.090350694771875 86-87 22.01482930692821 28.101786248107206 27.71469568230018 22.168688762664406 88-89 22.11523536277613 28.08222613194224 27.66638686668018 22.13615163860145 90-91 22.149359229570255 28.117254931766837 27.660032041311243 22.073353797351665 92-93 22.142577298742918 28.086157447862014 27.713914353582787 22.057350899812278 94-95 21.9534122434393 28.199820131785565 27.79504918426096 22.051718440514183 96-97 21.961132348070727 28.32599074448946 27.893059991031382 21.819816916408428 98-99 23.044726033084512 30.286183309267013 28.087029907525736 18.582060750122743 100 22.09113289123444 31.37077839151909 21.80964103826566 24.728447678980814 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2643.0 1 2185.0 2 2513.0 3 3477.0 4 4471.5 5 6849.0 6 8964.5 7 10593.5 8 11821.5 9 11868.0 10 11217.5 11 10535.0 12 11310.0 13 14732.5 14 22750.5 15 34558.5 16 45159.5 17 51934.0 18 54638.5 19 53439.0 20 49903.0 21 46269.0 22 44674.5 23 47419.0 24 55186.0 25 68000.5 26 85720.5 27 106145.0 28 127974.5 29 152298.5 30 176124.5 31 199812.5 32 227447.5 33 254166.5 34 279944.5 35 304081.5 36 327524.5 37 350228.0 38 366907.5 39 380643.5 40 395757.0 41 410190.0 42 419174.0 43 427022.5 44 434220.0 45 439104.5 46 440990.0 47 437147.5 48 430961.5 49 420680.5 50 407423.0 51 390731.5 52 368986.0 53 344997.0 54 320863.0 55 295245.0 56 267703.0 57 239932.5 58 211905.0 59 183031.0 60 151762.5 61 122523.0 62 96630.5 63 73964.5 64 55754.0 65 41845.0 66 31557.5 67 24276.5 68 18507.5 69 13463.5 70 9610.5 71 6943.5 72 4947.0 73 3367.0 74 2297.0 75 1569.0 76 1044.0 77 667.5 78 438.5 79 276.0 80 185.5 81 143.0 82 111.0 83 78.5 84 53.0 85 33.5 86 19.5 87 13.5 88 9.5 89 7.0 90 7.0 91 7.5 92 7.0 93 4.0 94 1.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 4.8341513845444635E-6 14-15 0.0 16-17 9.281570658325371E-4 18-19 0.001469582020901517 20-21 0.0 22-23 0.0033021428296192445 24-25 2.5629432259718026E-4 26-27 0.0017269747702530966 28-29 0.005338529308259702 30-31 0.0015745612908883285 32-33 0.005722167092909065 34-35 0.010999687717844047 36-37 7.566074775077681E-4 38-39 6.374883351894051E-5 40-41 0.002696690677402289 42-43 0.005713218453338528 44-45 0.0016838702072844223 46-47 0.0019545142226171553 48-49 0.0029903875034498614 50-51 0.010534000711709814 52-53 0.006438426257168345 54-55 0.00977466015443963 56-57 0.017988112090771103 58-59 0.012421933170314954 60-61 0.01644688649152675 62-63 0.014275201097155748 64-65 0.010994676896490233 66-67 0.01334477750747256 68-69 0.008628902954500188 70-71 0.008878823761769423 72-73 0.006466447131624894 74-75 0.01074421400939419 76-77 0.011347102861230973 78-79 0.006518032493889057 80-81 0.003970630145408318 82-83 0.002143700110017752 84-85 7.148435901375175E-5 86-87 0.004244551268331005 88-89 5.375649468559018E-4 90-91 5.145528885666286E-4 92-93 0.001462227143372884 94-95 0.0011244046438040293 96-97 4.4228953355485655E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 182.0 20-21 754.0 22-23 1738.0 24-25 3373.0 26-27 4782.0 28-29 7971.0 30-31 17170.0 32-33 22550.0 34-35 31294.0 36-37 44206.0 38-39 52744.0 40-41 58438.0 42-43 71173.0 44-45 80909.0 46-47 79000.0 48-49 72166.0 50-51 64317.0 52-53 61460.0 54-55 66965.0 56-57 72100.0 58-59 74167.0 60-61 74695.0 62-63 75266.0 64-65 78906.0 66-67 84553.0 68-69 87378.0 70-71 87494.0 72-73 85228.0 74-75 87937.0 76-77 87065.0 78-79 94742.0 80-81 98368.0 82-83 96039.0 84-85 99079.0 86-87 105609.0 88-89 116906.0 90-91 128115.0 92-93 144748.0 94-95 179896.0 96-97 411160.0 98-99 733134.0 100-101 6499300.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.56751058501443 #Duplication Level Percentage of deduplicated Percentage of total 1 89.49236551120269 75.68146567646615 2 7.2286468280305 12.226173342896006 3 1.834138166139705 4.653254963381953 4 0.6645639453954176 2.2480207394658374 5 0.3053778261560936 1.2912521272942072 6 0.15450665007294945 0.7839745659299563 7 0.09109589838037763 0.5392627345373788 8 0.05893345831594073 0.39870846879558597 9 0.04501557431044236 0.34261695512899537 >10 0.12260685451829496 1.565524530606123 >50 0.002072273077786605 0.1160884514387167 >100 5.839379826123463E-4 0.0878236367655014 >500 7.446223474062641E-5 0.04200109952011868 >1k 1.8614182444454026E-5 0.023832707773467722 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.668302769088927E-6 0.0 0.0 0.0 3 0.0 9.668302769088927E-6 0.0 9.668302769088927E-6 0.0 4 0.0 3.867321107635571E-5 0.0 9.668302769088927E-6 0.0 5 0.0 4.834151384544464E-5 0.0 1.9336605538177854E-5 0.0 6 0.0 4.834151384544464E-5 0.0 1.9336605538177854E-5 1.9336605538177854E-5 7 0.0 4.834151384544464E-5 0.0 1.9336605538177854E-5 1.9336605538177854E-5 8 0.0 4.834151384544464E-5 0.0 1.9336605538177854E-5 2.9004908307266785E-5 9 0.0 1.1601963322906714E-4 0.0 4.834151384544464E-5 2.9004908307266785E-5 10-11 0.0 1.1601963322906714E-4 0.0 9.668302769088928E-5 2.9004908307266785E-5 12-13 0.0 1.2568793599815605E-4 0.0 1.450245415363339E-4 2.9004908307266785E-5 14-15 4.8341513845444635E-6 1.8853190399723409E-4 0.0 1.691952984590562E-4 2.9004908307266785E-5 16-17 9.668302769088927E-6 1.9336605538177855E-4 0.0 2.127026609199564E-4 3.3839059691811246E-5 18-19 9.668302769088927E-6 2.0786850953541196E-4 0.0 2.513758719963121E-4 4.350736246090018E-5 20-21 1.9336605538177854E-5 2.2237096368904534E-4 0.0 2.513758719963121E-4 4.834151384544464E-5 22-23 1.9336605538177854E-5 2.3687341784267872E-4 0.0 2.658783261499455E-4 4.834151384544464E-5 24-25 2.900490830726678E-5 2.4170756922722319E-4 0.0 3.0938568861084567E-4 4.834151384544464E-5 26-27 3.867321107635571E-5 2.4170756922722319E-4 0.0 3.673955052253793E-4 4.834151384544464E-5 28-29 3.867321107635571E-5 2.4170756922722319E-4 0.0 6.76781193836225E-4 5.800981661453357E-5 30-31 4.834151384544464E-5 2.803807803035789E-4 0.0 0.0016242748652069397 6.284396799907804E-5 32-33 5.31756652299891E-5 2.803807803035789E-4 0.0 0.003988174892249183 6.767811938362249E-5 34-35 5.800981661453357E-5 2.948832344572123E-4 0.0 0.006932173085436762 7.734642215271142E-5 36-37 5.800981661453357E-5 3.190539913799346E-4 0.0 0.012438271512432906 7.734642215271142E-5 38-39 5.800981661453357E-5 3.383905969181125E-4 0.0 0.028163765966356048 9.668302769088928E-5 40-41 5.800981661453357E-5 4.06068716301735E-4 0.0 0.04558121340486975 9.668302769088928E-5 42-43 6.767811938362249E-5 4.302394732244573E-4 0.0 0.056917298401626515 1.0151717907543373E-4 44-45 6.767811938362249E-5 4.979175926080798E-4 0.0 0.0703755758561983 1.063513304599782E-4 46-47 7.734642215271142E-5 5.414249550689799E-4 0.0 0.08583519198397149 1.063513304599782E-4 48-49 8.701472492180035E-5 5.559274092226134E-4 0.0 0.09998958723791769 1.063513304599782E-4 50-51 8.701472492180035E-5 6.912836479898584E-4 0.0 0.11405213361555754 1.063513304599782E-4 52-53 8.701472492180035E-5 7.29956859066214E-4 0.0 0.15154581175408438 1.3052208738270052E-4 54-55 9.184887630634482E-5 7.39625161835303E-4 0.0 0.19820504091770758 1.595269956899673E-4 56-57 9.668302769088928E-5 7.541276159889363E-4 0.0 0.24419232303887906 1.6436114707451177E-4 58-59 9.668302769088928E-5 7.589617673734808E-4 0.0 0.2747296573350464 1.6436114707451177E-4 60-61 9.668302769088928E-5 7.734642215271142E-4 0.0 0.2952071225999768 1.6436114707451177E-4 62-63 9.668302769088928E-5 7.734642215271142E-4 0.0 0.3115610567338907 1.6436114707451177E-4 64-65 9.668302769088928E-5 8.508106436798256E-4 0.0 0.31852706887901927 1.6436114707451177E-4 66-67 9.668302769088928E-5 8.508106436798256E-4 0.0 0.32451658244446985 1.6919529845905624E-4 68-69 9.668302769088928E-5 8.74981400602548E-4 0.0 0.3306124473403804 1.740294498436007E-4 70-71 9.668302769088928E-5 8.846497033716369E-4 0.0 0.3356109598719994 1.740294498436007E-4 72-73 9.668302769088928E-5 8.894838547561814E-4 0.0 0.33913505623133233 1.8853190399723409E-4 74-75 9.668302769088928E-5 8.943180061407258E-4 0.0 0.34185668346083087 1.9336605538177855E-4 76-77 9.668302769088928E-5 9.474936713707149E-4 0.0 0.34501821846632297 1.9336605538177855E-4 78-79 9.668302769088928E-5 9.668302769088927E-4 0.0 0.3470678986533698 1.9820020676632302E-4 80-81 1.1601963322906714E-4 9.716644282934373E-4 0.0 0.347797855512436 2.0786850953541196E-4 82-83 1.1601963322906714E-4 9.764985796779817E-4 0.0 0.3482184266828914 2.2237096368904534E-4 84-85 1.1601963322906714E-4 9.764985796779817E-4 0.0 0.34839729028411953 2.2237096368904534E-4 86-87 1.1601963322906714E-4 0.0010151717907543375 0.0 0.34847947085765674 2.2237096368904534E-4 88 1.2568793599815605E-4 0.0010538450018306932 0.0 0.3484843050090413 2.2237096368904534E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11965 0.0 48.29925 1 GTATCAA 21730 0.0 36.641445 1 TCAACGC 25790 0.0 30.225811 4 ATCAACG 25930 0.0 30.01309 3 CAACGCA 26380 0.0 29.53357 5 TATCAAC 27380 0.0 28.705069 2 AACGCAG 27395 0.0 28.454962 6 ACGCAGA 31230 0.0 25.001854 7 CGCAGAG 31605 0.0 24.63748 8 GCAGAGT 38060 0.0 20.425203 9 TACATGG 28415 0.0 20.33787 2 GTACATG 29150 0.0 20.162823 1 ACATGGG 28615 0.0 19.65717 3 GTGGTAT 6560 0.0 19.511322 1 GAGTACT 21335 0.0 19.111828 12-13 TGGTATC 6315 0.0 18.709194 2 AGAGTAC 33850 0.0 18.609045 10-11 CAGAGTA 37045 0.0 18.020975 10-11 CATGGGG 20625 0.0 17.579592 4 GTACTTT 24225 0.0 16.903116 14-15 >>END_MODULE