##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139366_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8143776 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.0608609568829 33.0 31.0 34.0 30.0 34.0 2 32.24073132659837 33.0 31.0 34.0 30.0 34.0 3 32.254493492944796 34.0 31.0 34.0 30.0 34.0 4 35.99655933562023 37.0 35.0 37.0 35.0 37.0 5 35.867931534462635 37.0 35.0 37.0 35.0 37.0 6 35.89121103036233 37.0 35.0 37.0 35.0 37.0 7 35.83528611297757 37.0 35.0 37.0 35.0 37.0 8 35.82675542647539 37.0 35.0 37.0 35.0 37.0 9 37.60252209785731 39.0 37.0 39.0 35.0 39.0 10-11 37.48453862188744 39.0 37.0 39.0 34.5 39.0 12-13 37.45962603833897 39.0 37.0 39.0 34.0 39.0 14-15 38.70763648214293 40.0 38.0 41.0 34.0 41.0 16-17 38.66843587053475 40.0 38.0 41.0 34.0 41.0 18-19 38.69550310568464 40.0 38.0 41.0 34.0 41.0 20-21 38.680886440553394 40.0 38.0 41.0 34.0 41.0 22-23 38.60244474840039 40.0 38.0 41.0 34.0 41.0 24-25 38.54040351880307 40.0 38.0 41.0 34.0 41.0 26-27 38.37205372644928 40.0 38.0 41.0 34.0 41.0 28-29 38.26564564146173 40.0 38.0 41.0 34.0 41.0 30-31 38.11421454744739 40.0 37.5 41.0 33.0 41.0 32-33 37.93936698668908 40.0 37.0 41.0 33.0 41.0 34-35 38.02800235077818 40.0 37.0 41.0 33.0 41.0 36-37 38.00400424823812 40.0 37.0 41.0 33.0 41.0 38-39 37.96930819459817 40.0 37.0 41.0 33.0 41.0 40-41 37.897771070553105 40.0 37.0 41.0 33.0 41.0 42-43 37.79933453508653 40.0 37.0 41.0 33.0 41.0 44-45 37.85182553626446 40.0 37.0 41.0 33.0 41.0 46-47 37.8493027512933 40.0 37.0 41.0 33.0 41.0 48-49 37.796151983545485 40.0 37.0 41.0 33.0 41.0 50-51 37.71061164577653 40.0 37.0 41.0 32.5 41.0 52-53 37.52868709370976 40.0 36.0 41.0 32.0 41.0 54-55 37.408821253615514 39.0 36.0 41.0 31.5 41.0 56-57 37.24757902187012 39.0 36.0 41.0 31.0 41.0 58-59 37.115329936668594 39.0 35.0 41.0 31.0 41.0 60-61 36.9039965206383 39.0 35.0 40.5 31.0 41.0 62-63 36.69982597634389 38.5 35.0 40.0 31.0 41.0 64-65 36.40476342593857 38.0 35.0 40.0 30.5 41.0 66-67 36.129382324559714 37.5 34.5 40.0 30.0 41.0 68-69 35.83163457054902 37.0 34.0 40.0 30.0 41.0 70-71 35.545133076936025 36.5 34.0 39.0 29.0 41.0 72-73 35.26233129028773 36.0 34.0 39.0 29.0 40.5 74-75 34.897940401900414 35.5 34.0 38.5 29.0 40.0 76-77 33.60552225832282 34.5 32.0 36.5 28.0 39.0 78-79 34.28434400038161 35.0 33.5 37.0 29.0 39.0 80-81 34.20275473773068 35.0 34.0 37.0 29.0 39.0 82-83 33.92259700744765 35.0 33.0 36.0 29.0 38.5 84-85 33.736711494729704 35.0 33.0 36.0 29.0 37.0 86-87 33.49760071272049 35.0 33.0 35.5 29.0 37.0 88-89 33.38999570226321 35.0 33.0 35.0 29.0 36.5 90-91 33.257078564127305 35.0 33.0 35.0 29.0 36.0 92-93 33.132203472310415 35.0 33.0 35.0 29.0 36.0 94-95 33.09630779387057 35.0 33.0 35.0 29.0 36.0 96-97 33.149821959857064 35.0 33.0 35.0 29.0 35.0 98-99 33.27926108832859 35.0 33.0 35.0 29.0 35.0 100 32.08687687023272 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 7.0 20 43.0 21 266.0 22 1232.0 23 4556.0 24 12398.0 25 26564.0 26 48595.0 27 76353.0 28 109913.0 29 146350.0 30 184118.0 31 227098.0 32 278680.0 33 348495.0 34 458323.0 35 626263.0 36 951616.0 37 1617536.0 38 2031546.0 39 958419.0 40 35405.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.950254525664754 20.58891354575568 14.873370780335804 23.58746114824376 2 14.434041407818683 21.539627317843713 41.41900513963056 22.607326134707044 3 17.69871862880315 26.631282589305012 31.147516827574822 24.522481954317016 4 12.437264973889262 18.676090796210502 39.37352893792757 29.513115291972667 5 12.909674824061959 38.19092028071499 35.890058862129806 13.009346033093246 6 29.293217298707624 38.62054899348902 19.063601454656904 13.022632253146451 7 26.030529326936303 33.15918807197055 23.47864184869525 17.331640752397906 8 24.35699361082623 36.71495876114471 21.346166692207643 17.581880935821417 9 25.601490021336538 16.940262109370398 21.347984030994958 36.11026383829811 10-11 23.859085760708545 26.940911685193697 29.321263256749695 19.878739297348062 12-13 24.817434175182886 24.577201604906815 29.27904442350139 21.326319796408914 14-15 21.94369049443403 25.96053108533437 27.01766969032547 25.07810872990613 16-17 21.390143846092638 29.0980001237766 27.628809937099874 21.883046093030885 18-19 21.414829339657608 28.27509150845386 29.396425790338515 20.913653361550015 20-21 22.343912591689893 27.42435606783437 29.23693452014752 20.99479682032821 22-23 21.979861939072215 27.352633567217506 29.123350689199327 21.544153804510955 24-25 21.7739047355009 27.510032773224285 29.13731324418192 21.57874924709289 26-27 21.745684224651647 27.65738541152021 29.033675406899107 21.563254956929036 28-29 21.658227659787144 27.765025245710284 29.08446355124836 21.492283543254217 30-31 21.970099920449577 27.57925998416868 28.952913878791936 21.497726216589808 32-33 21.738608055717716 27.728367496271982 28.898474087599563 21.63455036041073 34-35 21.861561748735593 27.782299294408574 28.87277787026803 21.483361086587806 36-37 21.87465881603857 27.742703661831943 28.795228864883864 21.587408657245625 38-39 21.709738898584316 27.87341034896934 28.87176456916205 21.545086183284294 40-41 21.96859391720711 27.700905527884025 28.73448786015157 21.5960126947573 42-43 21.87475713517184 27.810912010411272 28.535415974154205 21.778914880262683 44-45 21.961257192945002 27.900966742469947 28.34634326078312 21.791432803801932 46-47 22.01079438028806 27.878597390910187 28.107377132468553 22.003231096333202 48-49 21.92372978042933 28.034764823933735 28.108314281138867 21.933191114498072 50-51 21.960597905879432 28.1193335339415 27.98016811587876 21.93990044430031 52-53 22.077106328269085 28.002136953312895 27.897368443076125 22.023388275341897 54-55 22.104729636132582 27.89427996820468 27.951690013133106 22.049300382529633 56-57 22.040893617974593 28.016008386367858 27.932852585962458 22.010245409695095 58-59 22.035448346790083 28.038166409552623 27.934025203854706 21.992360039802588 60-61 22.060210111405258 28.007488623603983 27.98781537188335 21.94448589310741 62-63 22.024958134497066 28.064945523294366 27.937395471905347 21.97270087030322 64-65 22.019306469049123 28.043614920140815 27.861637632837365 22.075440977972693 66-67 22.10729702202294 28.103076986332137 27.687523645086525 22.102102346558393 68-69 22.038466930071124 28.07546477107566 27.784724969548925 22.101343329304296 70-71 22.03107176995338 27.84812075979281 27.880060427995772 22.24074704225804 72-73 22.07943168747071 27.85224868288388 27.82491941095443 22.24340021869098 74-75 22.011649472885303 28.025574399269377 27.737743729953895 22.225032397891425 76-77 22.098590969781824 27.907204169718774 27.72067311704327 22.27353174345613 78-79 22.06941444437596 27.976514759643266 27.68171574053997 22.27235505544081 80-81 22.1012200047161 27.966067751222244 27.66011335675097 22.272598887310686 82-83 22.126499050412587 27.90326380178772 27.777605916167403 22.19263123163229 84-85 22.219453673361656 27.88971707906172 27.73550941273774 22.15531983483888 86-87 22.044843342507388 27.920103612136522 27.807708262895996 22.227344782460097 88-89 22.105945396368703 27.88028395611842 27.76612874937087 22.24764189814201 90-91 22.165826737273182 27.85836645185832 27.830366172566396 22.14544063830211 92-93 22.168034072976933 27.7880121467007 27.89389166979857 22.150062110523795 94-95 22.02441405577912 27.886740227380802 27.918742382487526 22.170103334352554 96-97 22.064139371607418 27.987311526902804 28.038888633667753 21.90966046782203 98-99 23.086937278979054 29.985985010054232 28.2377756478787 18.68930206308801 100 22.129766494530724 31.07224453032935 21.964789804279704 24.833199170860222 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1462.0 1 1299.0 2 1834.5 3 2720.0 4 3637.5 5 5763.5 6 7679.5 7 9236.0 8 10688.5 9 11213.5 10 10618.5 11 9712.0 12 10332.5 13 13193.0 14 20070.5 15 30448.0 16 39457.0 17 45029.0 18 46884.5 19 45487.5 20 42399.5 21 39127.0 22 37374.0 23 39255.5 24 45513.0 25 55871.0 26 70450.5 27 87167.0 28 104241.0 29 122972.5 30 141347.0 31 159813.0 32 180364.0 33 200058.5 34 219097.5 35 237445.5 36 255624.0 37 272936.5 38 285448.0 39 294911.5 40 307039.5 41 318193.5 42 324674.0 43 329789.0 44 334058.0 45 337167.0 46 337207.5 47 334373.5 48 330486.0 49 322816.5 50 312748.5 51 302002.0 52 287856.5 53 270118.0 54 251760.0 55 233406.0 56 213978.0 57 192814.0 58 170809.0 59 148403.0 60 124803.0 61 101863.5 62 80591.0 63 62383.5 64 47120.0 65 35100.5 66 26684.0 67 20687.5 68 15987.0 69 11674.5 70 8363.0 71 6005.0 72 4249.0 73 2911.0 74 1935.0 75 1296.5 76 858.0 77 557.0 78 363.0 79 246.5 80 168.5 81 106.5 82 75.5 83 56.0 84 43.0 85 36.0 86 30.0 87 21.5 88 12.5 89 6.5 90 3.5 91 2.5 92 2.5 93 3.0 94 2.5 95 2.0 96 2.0 97 1.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 1.2279316130502607E-5 14-15 0.0 16-17 8.841107613961878E-4 18-19 0.0015901714389000875 20-21 0.0 22-23 0.0033158282165191614 24-25 3.2551399581204744E-4 26-27 0.001634346843421892 28-29 0.00516358673061482 30-31 0.0015075463772029943 32-33 0.005301236605901756 34-35 0.010862819276054267 36-37 6.509770856065867E-4 38-39 3.113939481582636E-5 40-41 0.0025793034065273277 42-43 0.00542224385801782 44-45 0.0018911326945620162 46-47 0.0017404208388777254 48-49 0.0030569429139128113 50-51 0.01039962018326586 52-53 0.006544334466355288 54-55 0.009705593488158715 56-57 0.017912471433981808 58-59 0.012279861447905842 60-61 0.0159756545560124 62-63 0.014432425862907146 64-65 0.010550177753059654 66-67 0.012898791666028626 68-69 0.008815428531837729 70-71 0.008817439968105337 72-73 0.006020739744436638 74-75 0.010403817993270573 76-77 0.011386152526349672 78-79 0.0063245652703188 80-81 0.003982986281721654 82-83 0.0021122302852327316 84-85 6.0625120776607794E-5 86-87 0.00392106038363931 88-89 5.83333825926342E-4 90-91 4.976047440214568E-4 92-93 0.0015023274426297704 94-95 0.001155210379786473 96-97 4.375200354727783E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 175.0 20-21 589.0 22-23 1259.0 24-25 3080.0 26-27 3451.0 28-29 6354.0 30-31 13484.0 32-33 18002.0 34-35 24752.0 36-37 34273.0 38-39 40756.0 40-41 45435.0 42-43 57244.0 44-45 64732.0 46-47 62763.0 48-49 56758.0 50-51 51018.0 52-53 48021.0 54-55 52449.0 56-57 56915.0 58-59 57338.0 60-61 58064.0 62-63 58899.0 64-65 62681.0 66-67 67401.0 68-69 69508.0 70-71 69218.0 72-73 68310.0 74-75 70825.0 76-77 70506.0 78-79 76132.0 80-81 78903.0 82-83 76694.0 84-85 80806.0 86-87 85410.0 88-89 95389.0 90-91 104285.0 92-93 117249.0 94-95 138364.0 96-97 321045.0 98-99 576943.0 100-101 5098296.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 85.67694136814178 #Duplication Level Percentage of deduplicated Percentage of total 1 89.97248736915978 77.0856752507338 2 7.061613861275983 12.100349535139996 3 1.6914627921744425 4.347580754145692 4 0.6047458175818226 2.072510878223471 5 0.26733066995544097 1.1452037067839187 6 0.14790567642775393 0.7603263580389614 7 0.06837285953858446 0.41005842345016463 8 0.04707509936685129 0.3226600422682533 9 0.0339025191017997 0.261419772718548 >10 0.10337230952271734 1.3235196620109209 >50 0.0013554678806257062 0.07450590212790396 >100 3.3124188530156374E-4 0.05438617176332627 >500 2.2158065161563056E-5 0.016307558794740058 >1k 2.2158063768582666E-5 0.025495983800364188 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.4558632261005213E-5 0.0 0.0 0.0 3 0.0 3.683794839150782E-5 0.0 1.2279316130502607E-5 0.0 4 0.0 6.139658065251303E-5 0.0 2.4558632261005213E-5 1.2279316130502607E-5 5 0.0 6.139658065251303E-5 0.0 2.4558632261005213E-5 1.2279316130502607E-5 6 3.683794839150782E-5 6.139658065251303E-5 0.0 2.4558632261005213E-5 2.4558632261005213E-5 7 3.683794839150782E-5 6.139658065251303E-5 0.0 2.4558632261005213E-5 2.4558632261005213E-5 8 3.683794839150782E-5 7.367589678301565E-5 0.0 3.683794839150782E-5 2.4558632261005213E-5 9 3.683794839150782E-5 8.595521291351825E-5 0.0 3.683794839150782E-5 2.4558632261005213E-5 10-11 3.683794839150782E-5 8.595521291351825E-5 0.0 4.2977606456759125E-5 2.4558632261005213E-5 12-13 3.683794839150782E-5 8.595521291351825E-5 0.0 6.139658065251303E-5 2.4558632261005213E-5 14-15 3.683794839150782E-5 1.596311096965339E-4 0.0 6.753623871776435E-5 6.139658065251304E-5 16-17 7.367589678301565E-5 1.719104258270365E-4 0.0 7.981555484826695E-5 7.981555484826695E-5 18-19 8.595521291351825E-5 1.841897419575391E-4 0.0 8.595521291351825E-5 8.595521291351825E-5 20-21 8.595521291351825E-5 2.087483742185443E-4 0.0 1.1665350323977477E-4 8.595521291351825E-5 22-23 8.595521291351825E-5 2.2716734841429824E-4 0.0 3.5610016778457566E-4 1.227931613050261E-4 24-25 8.595521291351825E-5 2.6400529680580605E-4 0.0 9.8848494850546E-4 1.903294000227904E-4 26-27 8.595521291351825E-5 2.701449548710574E-4 0.0 0.002609354677731804 1.964690580880417E-4 28-29 8.595521291351825E-5 2.701449548710574E-4 0.0 0.008920923168810144 1.964690580880417E-4 30-31 8.595521291351825E-5 2.947035871320626E-4 0.0 0.009921687433446107 2.02608716153293E-4 32-33 8.595521291351825E-5 2.947035871320626E-4 0.0 0.012580159375699921 2.087483742185443E-4 34-35 8.595521291351825E-5 3.43820851654073E-4 0.0 0.01587715575673987 2.2102769034904694E-4 36-37 8.595521291351825E-5 4.05217432306586E-4 0.0 0.021458104938053307 2.2102769034904694E-4 38-39 8.595521291351825E-5 4.05217432306586E-4 0.0 0.03704669676572637 2.3330700647954952E-4 40-41 8.595521291351825E-5 4.297760645675913E-4 0.0 0.05442192909038755 2.455863226100521E-4 42-43 8.595521291351825E-5 4.359157226328426E-4 0.0 0.06583555343368973 2.5172598067530345E-4 44-45 8.595521291351825E-5 4.973123032853556E-4 0.0 0.08074264321611989 2.701449548710574E-4 46-47 8.595521291351825E-5 5.525692258726173E-4 0.0 0.09679170939868681 3.192622193930678E-4 48-49 9.209487097876955E-5 5.587088839378686E-4 0.0 0.11198122345211853 3.561001677845756E-4 50-51 9.823452904402085E-5 5.894071742641252E-4 0.0 0.12662430793774287 3.561001677845756E-4 52-53 9.823452904402085E-5 5.894071742641252E-4 0.0 0.1645182775164739 3.7451914198032954E-4 54-55 9.823452904402085E-5 6.201054645903817E-4 0.0 0.2100254230961166 4.05217432306586E-4 56-57 9.823452904402085E-5 6.508037549166381E-4 0.0 0.25616495345648016 4.174967484370886E-4 58-59 9.823452904402085E-5 6.508037549166381E-4 0.0 0.28670975233110535 4.174967484370886E-4 60-61 1.1665350323977477E-4 6.630830710471407E-4 0.0 0.3077135225723301 4.174967484370886E-4 62-63 1.350724774355287E-4 6.999210194386487E-4 0.0 0.3245791632775754 4.297760645675913E-4 64-65 1.350724774355287E-4 8.227141807436747E-4 0.0 0.3321984789365523 4.297760645675913E-4 66-67 1.350724774355287E-4 8.349934968741772E-4 0.0 0.33865739922119664 4.4819503876334515E-4 68-69 1.350724774355287E-4 8.595521291351826E-4 0.0 0.3451470177961673 4.666140129590991E-4 70-71 1.350724774355287E-4 8.718314452656852E-4 0.0 0.35025521330645637 4.788933290896017E-4 72-73 1.719104258270365E-4 8.841107613961878E-4 0.0 0.3539390081456072 5.894071742641252E-4 74-75 1.719104258270365E-4 9.148090517224442E-4 0.0 0.3571316303395378 5.894071742641252E-4 76-77 1.780500838922878E-4 9.762056323749573E-4 0.0 0.3598330798882484 5.955468323293764E-4 78-79 1.841897419575391E-4 0.0010191832388317165 0.0 0.36176707217880255 6.016864903946277E-4 80-81 1.841897419575391E-4 0.0010376022130274703 0.0 0.36243629490791496 6.262451226556329E-4 82-83 1.841897419575391E-4 0.0010437418710927215 0.0 0.36293360721120027 6.630830710471408E-4 84-85 1.903294000227904E-4 0.0010560211872232242 0.0 0.3631177969531578 6.630830710471408E-4 86-87 1.964690580880417E-4 0.0011174177678757373 0.0 0.36320375216607137 6.692227291123921E-4 88 1.964690580880417E-4 0.0011910936646587528 0.0 0.3632098918241366 6.753623871776433E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10175 0.0 50.817562 1 GTATCAA 18475 0.0 38.26576 1 TCAACGC 22515 0.0 30.88663 4 ATCAACG 22760 0.0 30.51657 3 CAACGCA 23105 0.0 30.09792 5 TATCAAC 23700 0.0 29.703213 2 AACGCAG 23915 0.0 29.114275 6 ACGCAGA 27345 0.0 25.477985 7 CGCAGAG 27660 0.0 25.218758 8 GCAGAGT 32810 0.0 21.038717 9 GTACATG 24230 0.0 20.492773 1 TACATGG 23950 0.0 20.089493 2 GAGTACT 18990 0.0 19.301268 12-13 GTGGTAT 4845 0.0 19.155252 1 ACATGGG 24520 0.0 19.064333 3 CAGAGTA 31605 0.0 18.802893 10-11 AGAGTAC 29365 0.0 18.72979 10-11 TGGTATC 4690 0.0 18.51165 2 GTACTTT 20720 0.0 17.639257 14-15 AGTACTT 20610 0.0 16.891817 12-13 >>END_MODULE