##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139365_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8662006 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.99098176565567 31.0 31.0 34.0 30.0 34.0 2 32.17429865553083 33.0 31.0 34.0 30.0 34.0 3 32.18569555366274 34.0 31.0 34.0 30.0 34.0 4 35.94989532447796 37.0 35.0 37.0 35.0 37.0 5 35.806900156845884 37.0 35.0 37.0 35.0 37.0 6 35.831409144717746 37.0 35.0 37.0 35.0 37.0 7 35.77119318550461 37.0 35.0 37.0 33.0 37.0 8 35.76079443953283 37.0 35.0 37.0 33.0 37.0 9 37.5267446131993 39.0 37.0 39.0 35.0 39.0 10-11 37.39965199747033 39.0 37.0 39.0 34.0 39.0 12-13 37.37155896682593 39.0 37.0 39.0 34.0 39.0 14-15 38.59528075829087 40.0 38.0 41.0 34.0 41.0 16-17 38.548852713794005 40.0 38.0 41.0 34.0 41.0 18-19 38.563956951773065 40.0 38.0 41.0 34.0 41.0 20-21 38.544276351867815 40.0 38.0 41.0 34.0 41.0 22-23 38.45878632421872 40.0 38.0 41.0 34.0 41.0 24-25 38.38628429207233 40.0 38.0 41.0 34.0 41.0 26-27 38.19846314034089 40.0 38.0 41.0 33.0 41.0 28-29 38.087558790748496 40.0 37.5 41.0 33.0 41.0 30-31 37.930816564310774 40.0 37.0 41.0 33.0 41.0 32-33 37.74899726400609 40.0 37.0 41.0 33.0 41.0 34-35 37.84054572351887 40.0 37.0 41.0 33.0 41.0 36-37 37.810744450247896 40.0 37.0 41.0 33.0 41.0 38-39 37.771608793741436 40.0 37.0 41.0 33.0 41.0 40-41 37.687466772556476 40.0 37.0 41.0 32.5 41.0 42-43 37.57170594639315 40.0 37.0 41.0 32.0 41.0 44-45 37.620599783954304 40.0 37.0 41.0 32.0 41.0 46-47 37.60459399758922 40.0 37.0 41.0 32.0 41.0 48-49 37.53720570118118 40.0 36.0 41.0 32.0 41.0 50-51 37.42615902787806 39.5 36.0 41.0 31.5 41.0 52-53 37.20924447659418 39.0 36.0 41.0 31.0 41.0 54-55 37.058698296351196 39.0 35.0 41.0 31.0 41.0 56-57 36.86439678983696 39.0 35.0 40.5 31.0 41.0 58-59 36.697421589950245 38.5 35.0 40.0 31.0 41.0 60-61 36.44815840318802 38.0 35.0 40.0 30.0 41.0 62-63 36.20605870784269 38.0 35.0 40.0 30.0 41.0 64-65 35.87526601812965 37.0 34.0 40.0 29.5 41.0 66-67 35.567901594819084 36.5 34.0 39.5 29.0 41.0 68-69 35.2475715272255 36.0 34.0 39.0 29.0 41.0 70-71 34.94261980128621 36.0 34.0 39.0 29.0 40.0 72-73 34.6556693918757 35.0 33.5 38.0 29.0 40.0 74-75 34.30003257788559 35.0 33.0 37.0 29.0 39.5 76-77 33.06266229210202 34.0 31.5 36.0 27.0 39.0 78-79 33.76432395676251 35.0 33.0 36.0 28.5 39.0 80-81 33.718235215856126 35.0 33.0 36.0 29.0 38.5 82-83 33.47472546341194 35.0 33.0 36.0 29.0 37.0 84-85 33.33591254486402 35.0 33.0 35.0 29.0 37.0 86-87 33.13291350166009 35.0 33.0 35.0 29.0 36.5 88-89 33.06550182190956 35.0 33.0 35.0 29.0 36.0 90-91 32.96275025486945 35.0 33.0 35.0 29.0 36.0 92-93 32.85856007679483 35.0 32.0 35.0 29.0 35.5 94-95 32.84984247807707 34.0 32.0 35.0 29.0 35.0 96-97 32.930648272666105 34.0 32.0 35.0 29.0 35.0 98-99 33.08508128236799 34.0 33.0 35.0 29.0 35.0 100 31.829513668438334 34.0 31.0 35.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 1.0 19 8.0 20 52.0 21 340.0 22 1659.0 23 5718.0 24 15285.0 25 33299.0 26 59394.0 27 93505.0 28 132527.0 29 173696.0 30 216408.0 31 264193.0 32 322762.0 33 402484.0 34 529464.0 35 728757.0 36 1116149.0 37 1811703.0 38 1912680.0 39 814176.0 40 27745.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 41.92848631136945 19.768007549290544 14.44947048062539 23.85403565871462 2 15.21481282742127 20.916205784202873 40.27433137312535 23.594650015250508 3 18.291617438270073 26.034465919326312 30.36468688661726 25.30922975578636 4 13.24769343267599 17.891167473215788 37.6266305980393 31.234508496068926 5 13.71770003391824 37.61432397991874 34.92907993829605 13.738896047866971 6 30.832119026470313 37.038810640399 18.33929692498481 13.789773408145873 7 27.22675324861239 32.43049011972515 22.556691833277416 17.78606479838504 8 25.493217160089703 35.649097911038155 20.50738593346622 18.350298995405915 9 26.26072990482805 16.51679761016097 20.452641108768567 36.76983137624241 10-11 24.912133517339978 26.06817635545392 28.24312289785992 20.77656722934618 12-13 25.841509798163948 23.6962098442445 28.31307945948545 22.149200898106102 14-15 22.931177835711498 24.936862200280167 25.86403195749345 26.26792800651489 16-17 22.472084127326074 28.098488117758674 26.485998828434997 22.943428926480255 18-19 22.622682941288488 27.25404980367693 28.19989054327238 21.9233767117622 20-21 23.39041543461104 26.38190345609787 28.024558988352833 22.203122120938257 22-23 23.328460294451478 26.24125087263229 27.909638363628847 22.520650469287386 24-25 23.01572824560969 26.480067448589416 27.842429867654488 22.661774438146402 26-27 22.886031816871867 26.636433211735987 27.835554697808806 22.641980273583346 28-29 22.87623253439398 26.61423504941466 27.888501019585014 22.621031396606348 30-31 23.02768901880291 26.52258233594278 27.71485549740499 22.734873147849328 32-33 22.849054676828413 26.702701636254545 27.729901365150877 22.718342321766166 34-35 23.016770275946094 26.660501383753576 27.700817187212714 22.621911153087616 36-37 23.00422488935997 26.6355465939644 27.633970725789464 22.726257790886166 38-39 22.858605037450737 26.776814500907985 27.69519890649693 22.669381555144344 40-41 23.037314465001074 26.610338369189478 27.632026039758657 22.720321126050795 42-43 22.95193324538183 26.720630900783256 27.39018441156718 22.937251442267733 44-45 22.99654612503431 26.759525273729306 27.25625293585398 22.987675665382397 46-47 23.157600053068702 26.81895112627978 27.00444815546696 23.019000665184556 48-49 23.02653534769693 26.96774482106451 26.894572758710854 23.111147072527704 50-51 23.025120649411683 27.068182884470893 26.825027844794036 23.08166862132338 52-53 23.213515158410853 26.905259729205746 26.733872936848353 23.147352175535048 54-55 23.16121615079708 26.793368651231543 26.77033387154559 23.275081326425795 56-57 23.106199085357865 26.877031439388098 26.87151879554632 23.145250679707715 58-59 23.097091367533626 26.904943079623273 26.78361837558735 23.21434717725575 60-61 23.155874855862425 26.90681442050854 26.831687973791972 23.105622749837064 62-63 23.118234206404484 26.975295645087094 26.80977918855985 23.09669095994857 64-65 23.132206160475334 26.96608616069077 26.681987526563226 23.219720152270668 66-67 23.160194904482335 26.972871440769513 26.586944227115456 23.279989427632696 68-69 23.062736769174908 26.966382670360105 26.687780465079143 23.28310009538584 70-71 23.10630725015507 26.844297174770727 26.72819371647136 23.321201858602837 72-73 23.161116730046942 26.822420787079682 26.609232488619348 23.40722999425403 74-75 23.03539144598484 26.985860113337967 26.644715933805674 23.334032506871523 76-77 23.2943191051816 26.85336318630688 26.586149841949506 23.26616786656201 78-79 23.150730070294493 26.844933116029207 26.570404694232053 23.433932119444247 80-81 23.200910955382234 26.912908490222392 26.587949760659313 23.29823079373606 82-83 23.205593531723935 26.836325877236966 26.66835201668338 23.289728574355724 84-85 23.19123636275099 26.860160942771135 26.66004084146372 23.288561853014162 86-87 23.12764774580811 26.878320465396076 26.759230216268428 23.23480157252739 88-89 23.12302211626804 26.788337166499527 26.703899921335022 23.38474079589741 90-91 23.2064420552672 26.75630859814048 26.756011213387744 23.281238133204578 92-93 23.270622553840347 26.731465063376643 26.776352713871336 23.22155966891167 94-95 23.066415253192027 26.696848852712797 26.936234553783994 23.300501340311186 96-97 23.131289883026763 26.836255797232806 26.963523006637917 23.06893131310251 98-99 24.234430216950447 28.877609260216996 27.05594793569148 19.832012587141072 100 23.267211692045066 29.80024116561471 20.779692442236254 26.152854700103973 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1812.0 1 1594.5 2 2140.0 3 3040.5 4 3885.0 5 6175.0 6 8312.5 7 10239.0 8 11800.5 9 11877.0 10 10702.5 11 9361.0 12 9922.5 13 13001.0 14 20319.5 15 31083.0 16 40283.0 17 45604.0 18 46885.5 19 44533.0 20 40148.5 21 35600.0 22 31984.5 23 31720.0 24 35886.0 25 43357.5 26 53443.0 27 65054.5 28 78848.5 29 95330.0 30 112518.5 31 130707.5 32 150067.5 33 168135.0 34 185647.0 35 202197.0 36 219798.5 37 239495.0 38 257425.5 39 270658.5 40 283688.0 41 298102.5 42 311161.0 43 324525.5 44 336741.0 45 349359.0 46 359143.0 47 365346.5 48 370959.5 49 371312.0 50 370966.0 51 371095.0 52 366706.5 53 357601.0 54 345302.0 55 328725.5 56 309218.5 57 285613.5 58 256707.5 59 225183.0 60 190466.0 61 158533.0 62 129561.0 63 102176.5 64 78389.0 65 59221.5 66 45016.5 67 34548.5 68 26345.5 69 19249.0 70 13956.5 71 10262.0 72 7220.5 73 4734.5 74 3069.0 75 2039.5 76 1390.5 77 902.0 78 608.0 79 410.0 80 265.5 81 175.5 82 120.0 83 80.5 84 62.5 85 51.0 86 36.5 87 26.0 88 19.0 89 13.5 90 9.5 91 6.5 92 5.5 93 3.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 5.772334953358379E-6 14-15 0.0 16-17 0.0010159309517910747 18-19 0.0015643027723601208 20-21 0.0 22-23 0.003209844384896828 24-25 2.656176693493089E-4 26-27 0.0016173951308435116 28-29 0.005282455007671986 30-31 0.001539528434337781 32-33 0.005431062754537549 34-35 0.011363571533275297 36-37 6.549991818358434E-4 38-39 2.9421809657838477E-5 40-41 0.002749534801229374 42-43 0.005373287025947722 44-45 0.0018017796521106976 46-47 0.0017952966271244978 48-49 0.0028444753316102245 50-51 0.01049783080979486 52-53 0.005900927731993725 54-55 0.009342652834004084 56-57 0.01780349407683397 58-59 0.011725485467402607 60-61 0.016165062518137298 62-63 0.014229929095114512 64-65 0.010376595549333685 66-67 0.012471238578970985 68-69 0.008344978462789332 70-71 0.008587737441804374 72-73 0.0059760540744005055 74-75 0.010521040180633066 76-77 0.01188187378964755 78-79 0.006732370557297025 80-81 0.004112238407021647 82-83 0.0022324729738916983 84-85 6.580488588116691E-5 86-87 0.004309366296579474 88-89 5.254312476965469E-4 90-91 4.7276326928306065E-4 92-93 0.0012649713825446521 94-95 0.0011565540930251312 96-97 3.747692012389218E-4 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 202.0 20-21 647.0 22-23 1432.0 24-25 2950.0 26-27 3536.0 28-29 9263.0 30-31 20983.0 32-33 26106.0 34-35 35731.0 36-37 50251.0 38-39 57935.0 40-41 61609.0 42-43 73711.0 44-45 81580.0 46-47 79076.0 48-49 71878.0 50-51 63408.0 52-53 58676.0 54-55 63193.0 56-57 66667.0 58-59 67556.0 60-61 67881.0 62-63 67269.0 64-65 70399.0 66-67 75305.0 68-69 76988.0 70-71 76649.0 72-73 74510.0 74-75 76272.0 76-77 74994.0 78-79 81227.0 80-81 83242.0 82-83 81501.0 84-85 84670.0 86-87 89194.0 88-89 101168.0 90-91 110952.0 92-93 127028.0 94-95 151057.0 96-97 352735.0 98-99 605510.0 100-101 5237065.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.17484606431866 #Duplication Level Percentage of deduplicated Percentage of total 1 88.15530472395459 72.44148595444071 2 7.8537289875154865 12.907579411599245 3 2.1046635307996318 5.188512049819353 4 0.8373642350731338 2.7524110846760284 5 0.3932095030880588 1.615596519364423 6 0.21555400329548036 1.062787022361224 7 0.12802722905957215 0.7364432488008124 8 0.0773645229692189 0.5085934212668006 9 0.05871209775297786 0.4342191835467766 >10 0.17310214979746116 2.1540142793511947 >50 0.0024707679748003576 0.1336873192847802 >100 4.982487195502783E-4 0.06467050548853112 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 2.3089339813433518E-5 0.0 0.0 0.0 3 0.0 2.3089339813433518E-5 0.0 0.0 0.0 4 0.0 6.926801944030055E-5 0.0 0.0 1.1544669906716759E-5 5 0.0 6.926801944030055E-5 0.0 0.0 1.1544669906716759E-5 6 3.463400972015028E-5 6.926801944030055E-5 0.0 0.0 2.3089339813433518E-5 7 3.463400972015028E-5 6.926801944030055E-5 0.0 0.0 2.3089339813433518E-5 8 3.463400972015028E-5 6.926801944030055E-5 0.0 1.1544669906716759E-5 3.463400972015028E-5 9 3.463400972015028E-5 1.8471471850746814E-4 0.0 2.3089339813433518E-5 4.6178679626867036E-5 10-11 6.349568448694217E-5 1.8471471850746814E-4 0.0 2.3089339813433518E-5 4.6178679626867036E-5 12-13 6.926801944030055E-5 1.8471471850746814E-4 0.0 3.463400972015028E-5 5.195101458022541E-5 14-15 7.504035439365894E-5 2.539827379477687E-4 0.0 5.195101458022541E-5 8.658502430037569E-5 16-17 1.2699136897388434E-4 2.7707207776120216E-4 0.0 6.926801944030055E-5 1.0390202916045082E-4 18-19 1.2699136897388434E-4 3.0016141757463575E-4 0.0 1.2121903402052596E-4 1.327637039272427E-4 20-21 1.616253786940346E-4 3.1747842243471085E-4 0.0 1.6739771364739298E-4 1.7894238355410977E-4 22-23 1.616253786940346E-4 3.4634009720150275E-4 0.0 5.772334953358379E-4 2.2512106318097678E-4 24-25 1.904870534608265E-4 3.7520177196829466E-4 0.0 0.0019625938841418486 2.4243806804105192E-4 26-27 1.9625938841418488E-4 3.9251877682836976E-4 0.0 0.00584160297279868 2.4243806804105192E-4 28-29 1.9625938841418488E-4 3.9251877682836976E-4 0.0 0.019141062705336387 2.482104029944103E-4 30-31 2.0780405832090165E-4 4.2715278654852003E-4 0.0 0.021051705574898008 2.712997428078438E-4 32-33 2.0780405832090165E-4 4.386974564552368E-4 0.0 0.025380956789916795 2.943890826212773E-4 34-35 2.3089339813433515E-4 5.368271506623293E-4 0.0 0.03080117931112031 3.117060874813525E-4 36-37 2.539827379477687E-4 6.23412174962705E-4 0.0 0.03929805636246385 3.232507573880692E-4 38-39 2.539827379477687E-4 6.291845099160633E-4 0.0 0.062433574855524226 3.290230923414276E-4 40-41 2.770720777612022E-4 7.15769534216439E-4 0.0 0.08844948849031045 3.4056776224814433E-4 42-43 2.770720777612022E-4 7.734928837500228E-4 0.0 0.10475056239859451 3.521124321548611E-4 44-45 2.770720777612022E-4 8.427609031903234E-4 0.0 0.12341252130280214 3.578847671082195E-4 46-47 2.770720777612022E-4 8.773949129104737E-4 0.0 0.14334439389674863 3.694294370149363E-4 48-49 2.770720777612022E-4 8.83167247863832E-4 0.0 0.16271635000021933 3.80974106921653E-4 50-51 2.943890826212773E-4 0.001004386281884358 0.0 0.18124554520049974 3.9251877682836976E-4 52-53 3.001614175746357E-4 0.0010159309517910747 0.0 0.22809958801690972 4.040634467350865E-4 54-55 3.001614175746357E-4 0.0010159309517910747 0.0 0.2837448969672845 4.156081166418033E-4 56-57 3.001614175746357E-4 0.0010274756216977915 0.0 0.33897459780101746 4.386974564552368E-4 58-59 3.001614175746357E-4 0.00103324795665115 0.0 0.37461299380305213 4.617867962686703E-4 60-61 3.290230923414276E-4 0.0010447926265578665 0.0 0.399093466340245 4.906484710354623E-4 62-63 3.578847671082195E-4 0.0010909713061847339 0.0 0.41813639935137425 4.964208059888206E-4 64-65 3.578847671082195E-4 0.0012237350101119765 0.0 0.42627539163560957 4.964208059888206E-4 66-67 3.694294370149363E-4 0.0012237350101119765 0.0 0.433207965914593 4.964208059888206E-4 68-69 3.80974106921653E-4 0.0012352796800186932 0.0 0.439649891722541 5.079654758955374E-4 70-71 3.867464418750114E-4 0.0012352796800186932 0.0 0.4448161315057967 5.368271506623293E-4 72-73 4.2138045159516166E-4 0.0012410520149720517 0.0 0.4485970109002464 5.772334953358379E-4 74-75 4.2715278654852003E-4 0.0012814583596455602 0.0 0.4515062677167391 5.830058302891963E-4 76-77 4.3292512150187846E-4 0.001293003029552277 0.0 0.454259671489491 5.94550500195913E-4 78-79 4.5024212636195356E-4 0.001293003029552277 0.0 0.4560664123298922 6.003228351492714E-4 80-81 4.5024212636195356E-4 0.0012987753645056352 0.0 0.45674177551943507 6.176398400093465E-4 82-83 4.5024212636195356E-4 0.0013103200344123521 0.0 0.45722665165551724 6.349568448694217E-4 84-85 4.5024212636195356E-4 0.001327637039272427 0.0 0.45733632601963103 6.407291798227801E-4 86-87 4.5024212636195356E-4 0.001327637039272427 0.0 0.45744600038374483 6.580461846828552E-4 88 4.617867962686703E-4 0.0013622710489925775 0.0 0.45745754505365155 6.695908545895719E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10725 0.0 49.778812 1 GTATCAA 19935 0.0 38.76354 1 TCAACGC 25070 0.0 30.116693 4 ATCAACG 25200 0.0 29.961332 3 TATCAAC 25915 0.0 29.36269 2 CAACGCA 25695 0.0 29.351292 5 AACGCAG 26430 0.0 28.598927 6 ACGCAGA 30935 0.0 24.393196 7 CGCAGAG 31425 0.0 23.985981 8 GTACATG 29155 0.0 22.466219 1 TACATGG 29930 0.0 21.546064 2 GCAGAGT 36335 0.0 20.582108 9 ACATGGG 30895 0.0 20.394962 3 GTGGTAT 5010 0.0 19.796183 1 GAGTACT 18550 0.0 18.975565 12-13 AGAGTAC 32325 0.0 18.814081 10-11 CATGGGG 23865 0.0 18.232595 4 CAGAGTA 34995 0.0 18.144447 10-11 TGGTATC 5285 0.0 17.328701 2 GTACTTT 20275 0.0 17.226908 14-15 >>END_MODULE