##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139362_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7591741 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.17555090459487 33.0 31.0 34.0 30.0 34.0 2 32.398880046092195 34.0 31.0 34.0 31.0 34.0 3 32.44449092770683 34.0 31.0 34.0 31.0 34.0 4 36.08041804903513 37.0 35.0 37.0 35.0 37.0 5 35.93693422892061 37.0 35.0 37.0 35.0 37.0 6 35.959857034111145 37.0 35.0 37.0 35.0 37.0 7 35.91451644622755 37.0 35.0 37.0 35.0 37.0 8 35.91230127582066 37.0 35.0 37.0 35.0 37.0 9 37.686723506505295 39.0 37.0 39.0 35.0 39.0 10-11 37.56993527571607 39.0 37.0 39.0 35.0 39.0 12-13 37.5343083358613 39.0 37.0 39.0 35.0 39.0 14-15 38.8085532027502 40.0 38.0 41.0 35.0 41.0 16-17 38.794268864019465 40.0 38.0 41.0 35.0 41.0 18-19 38.77067532994079 40.0 38.0 41.0 34.0 41.0 20-21 38.75732535048936 40.0 38.0 41.0 34.0 41.0 22-23 38.68103623499907 40.0 38.0 41.0 34.0 41.0 24-25 38.61621616491272 40.0 38.0 41.0 34.0 41.0 26-27 38.44631563894258 40.0 38.0 41.0 34.0 41.0 28-29 38.31124103388728 40.0 38.0 41.0 34.0 41.0 30-31 38.178308793807766 40.0 38.0 41.0 33.5 41.0 32-33 38.089712254268214 40.0 37.5 41.0 33.0 41.0 34-35 38.14806776373001 40.0 38.0 41.0 33.0 41.0 36-37 38.11051045179529 40.0 38.0 41.0 33.0 41.0 38-39 38.04528863762849 40.0 37.0 41.0 33.0 41.0 40-41 37.97079600906294 40.0 37.0 41.0 33.0 41.0 42-43 37.93600199904842 40.0 37.0 41.0 33.0 41.0 44-45 37.96507518991951 40.0 37.0 41.0 33.0 41.0 46-47 37.94700417684534 40.0 37.0 41.0 33.0 41.0 48-49 37.862699552404344 40.0 37.0 41.0 33.0 41.0 50-51 37.77541800810484 40.0 37.0 41.0 33.0 41.0 52-53 37.54473795771278 40.0 36.5 41.0 32.0 41.0 54-55 37.41796930621661 39.0 36.0 41.0 32.0 41.0 56-57 37.349023982796425 39.0 36.0 41.0 32.0 41.0 58-59 37.18529094687872 39.0 35.5 41.0 31.0 41.0 60-61 36.98707524211362 39.0 35.0 40.5 31.0 41.0 62-63 36.73235561006081 38.5 35.0 40.0 31.0 41.0 64-65 36.43436778871006 38.0 35.0 40.0 30.5 41.0 66-67 36.145832271839595 37.5 35.0 40.0 30.0 41.0 68-69 35.855761964206664 37.0 34.0 39.5 30.0 41.0 70-71 35.554510710515245 36.5 34.0 39.0 30.0 41.0 72-73 35.24056866671167 36.0 34.0 39.0 29.0 40.5 74-75 34.884147319743995 35.5 34.0 38.5 29.0 40.0 76-77 33.558819621514104 34.5 31.5 36.5 28.0 39.0 78-79 34.283124484351475 35.0 33.0 37.0 29.0 39.0 80-81 34.231075846872685 35.0 34.0 37.0 29.0 39.0 82-83 33.95442589660082 35.0 33.0 36.0 29.0 38.5 84-85 33.77122958651714 35.0 33.0 36.0 29.0 37.0 86-87 33.536759832575406 35.0 33.0 35.5 29.0 37.0 88-89 33.42671622460651 35.0 33.0 35.0 29.0 36.5 90-91 33.247820548731774 35.0 33.0 35.0 29.0 36.0 92-93 33.14212566523875 35.0 33.0 35.0 29.0 36.0 94-95 33.13797981973424 35.0 33.0 35.0 29.0 36.0 96-97 33.17542548663093 35.0 33.0 35.0 29.0 35.0 98-99 33.27835344392584 35.0 33.0 35.0 29.0 35.0 100 31.980639130534378 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 4.0 19 7.0 20 31.0 21 209.0 22 1165.0 23 4008.0 24 10725.0 25 23455.0 26 42842.0 27 69060.0 28 98543.0 29 131981.0 30 167241.0 31 206914.0 32 255778.0 33 323337.0 34 428917.0 35 593330.0 36 925297.0 37 1601750.0 38 1946593.0 39 739589.0 40 20963.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.34035148727433 20.30271057754876 14.682813162726857 23.67412477245006 2 14.593979772753018 21.313743621356895 41.29544742048595 22.796829185404135 3 18.08691840251136 26.226197653476323 30.728629967750482 24.958253976261837 4 12.60953351932495 18.303616825655254 39.01867029165909 30.068179363360702 5 13.111933086231472 38.06890935820913 35.68766373879193 13.13149381676746 6 29.78231212050042 38.16540896218667 18.882045633537814 13.170233283775094 7 26.450928713189768 32.866558540392774 23.171997042575608 17.510515703841847 8 24.543727788359455 36.58077067971243 21.20118707964182 17.6743144522863 9 25.63544062362515 16.944231493702368 21.24747422856947 36.17285365410301 10-11 24.089615819298345 26.83864963763248 29.036149815457325 20.03558472761185 12-13 24.955375848570178 24.335188726801928 29.124887163563667 21.584548261064228 14-15 22.058227486949306 25.77576737667947 26.783546751660786 25.38245838471044 16-17 21.644720419987472 28.945374888611248 27.403886240878965 22.006018450522316 18-19 21.692775974720938 28.130130166521838 29.094408828967598 21.082685029789623 20-21 22.50760321242311 27.30252065196888 28.9565684273311 21.23330770827691 22-23 22.196253063403393 27.21361443526005 28.831793628120945 21.75833887321561 24-25 22.031390256256994 27.328705189814233 28.85958205710846 21.780322496820308 26-27 21.937532650091544 27.535388991336706 28.750596971389868 21.776481387181885 28-29 21.870408850667665 27.649955344684702 28.776341492621714 21.703294312025918 30-31 22.19627692798362 27.398367069510027 28.71482977436281 21.690526228143543 32-33 22.011423629668776 27.53073744299431 28.64899649710499 21.80884243023192 34-35 22.117068964889768 27.56310733896905 28.63391308346807 21.685910612673116 36-37 22.105662724940437 27.539746289996085 28.573398050543293 21.78119293452019 38-39 21.936207088095415 27.668308113627678 28.650199572947383 21.745285225329525 40-41 22.24436936276483 27.496318485892683 28.502923351462766 21.756388799879716 42-43 22.094476472850168 27.615361622003814 28.32578557214799 21.964376332998032 44-45 22.195055921390146 27.693110705397224 28.16173779392839 21.95009557928424 46-47 22.266896868306034 27.687941545998303 27.92840268036172 22.116758905333942 48-49 22.16317513145497 27.803852575041137 27.953204852653197 22.079767440850688 50-51 22.149804713884535 27.898382415264123 27.885323148058642 22.0664897227927 52-53 22.30920097004612 27.790024453542234 27.78880738315919 22.11196719325245 54-55 22.309621169405645 27.671176789989794 27.813146987983554 22.206055052621004 56-57 22.267809092138023 27.84403020542961 27.780373030082924 22.107787672349446 58-59 22.25773144372548 27.87519172142626 27.801589237942707 22.06548759690555 60-61 22.297263671217948 27.83170549295344 27.825012024610835 22.04601881121778 62-63 22.23823238158227 27.896355832944984 27.729571184841323 22.135840600631415 64-65 22.248222379928865 27.85680533196566 27.70612026109765 22.188852027007826 66-67 22.30904713996957 27.86813212549233 27.64076253181601 22.182058202722086 68-69 22.253771417389395 27.8524720878431 27.684386830800374 22.20936966396713 70-71 22.233227885986654 27.70054181418123 27.735293536044097 22.33093676378802 72-73 22.300813458448072 27.718156055484805 27.690511787500068 22.29051869856706 74-75 22.14607054857261 27.835563001118473 27.659722316625455 22.358644133683462 76-77 22.25214573448588 27.732812828758412 27.64556375901958 22.369477677736125 78-79 22.255533465910307 27.794512826543627 27.583014819157363 22.366938888388702 80-81 22.226938959605466 27.773733452564574 27.65479777905955 22.344529808770414 82-83 22.27367028294256 27.739098172244265 27.716668612797324 22.270562932015856 84-85 22.323800166897616 27.717037363615916 27.687770529380213 22.27139194010626 86-87 22.18435449474319 27.718023105814332 27.73661423512907 22.361008164313407 88-89 22.26724079278741 27.686709816892407 27.708746944966013 22.337302445354172 90-91 22.276183528062173 27.67070013208398 27.76248467021107 22.290631669642778 92-93 22.261860736063593 27.633559976938038 27.825314931454635 22.279264355543734 94-95 22.11763819737726 27.729982399423704 27.79818913988752 22.354190263311512 96-97 22.155822802749796 27.881964624333687 27.89984837404856 22.062364198867954 98-99 22.287559033730023 28.707453714613308 26.99573548091442 22.009251770742257 100 20.52102036752825 28.569920760641455 28.037218006029736 22.87184086580056 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1112.0 1 996.5 2 1470.5 3 2214.0 4 2925.0 5 4649.5 6 6248.0 7 7642.0 8 8957.0 9 9209.0 10 8495.0 11 7696.5 12 7985.0 13 10087.5 14 15760.5 15 24252.5 16 31497.5 17 35928.0 18 37343.0 19 35751.5 20 32569.5 21 29453.0 22 27898.0 23 29094.5 24 33456.0 25 41645.5 26 53610.0 27 67407.0 28 82422.5 29 99103.5 30 115662.5 31 133044.5 32 152934.5 33 172065.5 34 190028.5 35 205752.0 36 222393.5 37 239418.0 38 251411.0 39 259730.5 40 269934.0 41 281409.5 42 287908.5 43 292882.0 44 297003.5 45 301615.0 46 304855.0 47 303422.0 48 300562.0 49 294802.0 50 286594.5 51 276547.5 52 264061.0 53 249866.0 54 233862.0 55 216215.5 56 198572.5 57 179874.0 58 159856.0 59 138880.5 60 116873.0 61 95853.5 62 75770.5 63 58268.0 64 43929.5 65 32547.0 66 24557.0 67 19035.0 68 14584.5 69 10569.0 70 7488.5 71 5337.0 72 3758.0 73 2578.5 74 1745.0 75 1140.0 76 713.0 77 437.5 78 278.0 79 189.5 80 142.5 81 111.5 82 84.5 83 57.5 84 37.5 85 23.5 86 16.0 87 12.0 88 8.0 89 7.0 90 5.5 91 3.5 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.3172209115142364E-5 2 1.3172209115142364E-5 3 0.0 4 1.3172209115142364E-5 5 0.0 6 0.0 7 0.0 8 1.3172209115142364E-5 9 1.3172209115142364E-5 10-11 1.3172209115142364E-5 12-13 0.0 14-15 0.0 16-17 0.0011328099839022433 18-19 5.268883646056946E-5 20-21 0.0 22-23 0.007232283967133025 24-25 0.008472308398350285 26-27 0.021438582251331887 28-29 0.016653948746187097 30-31 0.0020254689191464476 32-33 0.006631604151357778 34-35 0.033953627005417104 36-37 0.005719684050750498 38-39 0.0025779833313444764 40-41 0.007690334103033151 42-43 0.0075374945207698435 44-45 0.008727663832157954 46-47 0.0052060062592265656 48-49 0.0010447901538975896 50-51 0.0025205044742019895 52-53 0.0010324479237711563 54-55 0.005201711816106998 56-57 8.336891440513559E-4 58-59 0.0014876655572833234 60-61 8.757732347852125E-4 62-63 0.0013685566294070143 64-65 4.2096504130894864E-4 66-67 0.005840500996482579 68-69 0.0039731534024595805 70-71 0.001699007658169939 72-73 0.0014798947320704466 74-75 7.520064834528205E-4 76-77 6.843588474931061E-4 78-79 7.918190429547167E-4 80-81 0.0011083594241141769 82-83 0.007309564606268552 84-85 7.66613817913435E-4 86-87 6.0705691522814416E-5 88-89 5.522674760248799E-4 90-91 3.573183537193811E-4 92-93 0.0024343990512619047 94-95 0.003373363377901794 96-97 4.1055423261296664E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 133.0 20-21 428.0 22-23 1104.0 24-25 2580.0 26-27 2778.0 28-29 4389.0 30-31 8134.0 32-33 10287.0 34-35 13697.0 36-37 17770.0 38-39 21632.0 40-41 24730.0 42-43 33284.0 44-45 36642.0 46-47 36161.0 48-49 31105.0 50-51 27738.0 52-53 26140.0 54-55 28361.0 56-57 30616.0 58-59 32103.0 60-61 32893.0 62-63 33702.0 64-65 36936.0 66-67 40702.0 68-69 42652.0 70-71 44023.0 72-73 44585.0 74-75 47517.0 76-77 46378.0 78-79 52025.0 80-81 56022.0 82-83 56969.0 84-85 61961.0 86-87 68065.0 88-89 78732.0 90-91 87931.0 92-93 101564.0 94-95 128104.0 96-97 317427.0 98-99 148531.0 100-101 5675210.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 84.12733698459941 #Duplication Level Percentage of deduplicated Percentage of total 1 88.79191990191795 74.69827767098211 2 7.831554537063017 13.176956553055378 3 1.902255350500973 4.800950307070579 4 0.6998849959621608 2.355178436230948 5 0.31554378713448317 1.3272929256829684 6 0.15804915628652813 0.7977752778629021 7 0.09223226569736065 0.5431478428022478 8 0.05997931641688528 0.40367201314473794 9 0.03577633217933093 0.2708790797991187 >10 0.1107672131760199 1.3876939412515803 >50 0.001384262660821636 0.07581652758867394 >100 5.770555706118097E-4 0.09944134997337474 >500 5.0550333969806476E-5 0.03246907415214594 >1k 2.527509986663055E-5 0.030449000403207863 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.3172209115142363E-5 0.0 0.0 0.0 3 0.0 1.3172209115142363E-5 0.0 0.0 0.0 4 0.0 3.951662734542709E-5 0.0 0.0 0.0 5 2.6344418230284725E-5 3.951662734542709E-5 0.0 0.0 0.0 6 1.3172209115142365E-4 3.951662734542709E-5 0.0 0.0 0.0 7 1.3172209115142365E-4 3.951662734542709E-5 0.0 0.0 0.0 8 1.3172209115142365E-4 3.951662734542709E-5 0.0 0.0 0.0 9 1.44894300266566E-4 1.053776729211389E-4 0.0 1.3172209115142363E-5 0.0 10-11 1.778248230544219E-4 1.053776729211389E-4 0.0 1.3172209115142363E-5 0.0 12-13 2.0416924128470663E-4 1.053776729211389E-4 0.0 1.3172209115142363E-5 6.586104557571181E-6 14-15 2.2392755495742017E-4 1.2513598659385247E-4 0.0 3.951662734542709E-5 1.9758313672713545E-5 16-17 2.634441823028473E-4 1.3172209115142365E-4 0.0 5.268883646056945E-5 2.6344418230284725E-5 18-19 2.8320249597556084E-4 1.3172209115142365E-4 0.0 7.903325469085418E-5 3.2930522787855905E-5 20-21 3.1613301876341673E-4 1.3172209115142365E-4 0.0 1.053776729211389E-4 6.586104557571182E-5 22-23 3.293052278785591E-4 1.5148040482413716E-4 0.0 1.9099703216956425E-4 6.586104557571182E-5 24-25 3.556496461088438E-4 1.8441092761199308E-4 0.0 4.280967962421268E-4 8.561935924842535E-5 26-27 3.6882185522398616E-4 2.107553458422778E-4 0.0 0.001014260101865962 9.220546380599654E-5 28-29 3.6882185522398616E-4 2.17341450399849E-4 0.0 0.0033062244879007332 9.879156836356773E-5 30-31 3.885801688966997E-4 2.502719731877049E-4 0.0 0.0038989738980821395 1.053776729211389E-4 32-33 3.951662734542709E-4 2.502719731877049E-4 0.0 0.005005439463754098 1.053776729211389E-4 34-35 4.1492458712698445E-4 3.0954691420584553E-4 0.0 0.0065795184530136105 1.053776729211389E-4 36-37 4.34682900799698E-4 3.819940643391285E-4 0.0 0.008799035688915099 1.053776729211389E-4 38-39 4.544412144724115E-4 3.951662734542709E-4 0.0 0.013336861729081642 1.053776729211389E-4 40-41 4.8737173726026744E-4 4.34682900799698E-4 0.0 0.017920790501151185 1.053776729211389E-4 42-43 4.939578418178386E-4 4.412690053572692E-4 0.0 0.022228102881802738 1.1196377747871009E-4 44-45 5.07130050932981E-4 5.137161554905522E-4 0.0 0.02770774187370196 1.3830819570899482E-4 46-47 5.334744691632657E-4 5.79577201066264E-4 0.0 0.03330593074763746 1.5806650938170836E-4 48-49 5.598188873935505E-4 5.79577201066264E-4 0.0 0.038838258575997264 1.5806650938170836E-4 50-51 5.927494101814064E-4 7.2447150133283E-4 0.0 0.04428496704510863 1.5806650938170836E-4 52-53 6.256799329692623E-4 7.376437104479723E-4 0.0 0.05525083113346464 1.6465261393927954E-4 54-55 6.388521420844047E-4 7.442298150055435E-4 0.0 0.0681266655435163 1.712387184968507E-4 56-57 6.454382466419757E-4 7.63988128678257E-4 0.0 0.08344594474442688 1.8441092761199308E-4 58-59 6.586104557571181E-4 7.771603377933994E-4 0.0 0.09706600896948407 1.9758313672713545E-4 60-61 6.651965603146893E-4 8.035047560236841E-4 0.0 0.10345453039032812 1.9758313672713545E-4 62-63 7.2447150133283E-4 8.166769651388265E-4 0.0 0.11152909457791038 2.2392755495742017E-4 64-65 7.376437104479723E-4 8.69365801599396E-4 0.0 0.11537537963953196 2.2392755495742017E-4 66-67 7.376437104479723E-4 8.825380107145383E-4 0.0 0.11837864331778442 2.2392755495742017E-4 68-69 7.63988128678257E-4 9.08882428944823E-4 0.0 0.1215136290871883 2.2392755495742017E-4 70-71 7.96918651466113E-4 9.286407426175366E-4 0.0 0.1239570738780472 2.502719731877049E-4 72-73 8.496074879266824E-4 9.352268471751078E-4 0.0 0.12619634942762142 2.8320249597556084E-4 74-75 8.627796970418248E-4 9.549851608478214E-4 0.0 0.12826438625869876 2.89788600533132E-4 76-77 8.69365801599396E-4 9.747434745205348E-4 0.0 0.13035218140344884 2.963747050907032E-4 78-79 8.69365801599396E-4 9.879156836356772E-4 0.0 0.13182746882434476 3.029608096482744E-4 80-81 8.825380107145383E-4 9.879156836356772E-4 0.0 0.1322358073069142 3.2271912332098793E-4 82-83 8.891241152721095E-4 9.879156836356772E-4 0.0 0.13258487084846546 3.358913324361302E-4 84-85 8.957102198296807E-4 9.879156836356772E-4 0.0 0.13269683462594417 3.424774369937014E-4 86-87 9.088824289448231E-4 0.001014260101865962 0.0 0.13279562619430774 3.490635415512726E-4 88 9.088824289448231E-4 0.0010669489383265313 0.0 0.13281538450798044 3.556496461088438E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9030 0.0 51.064346 1 GTATCAA 16270 0.0 37.75198 1 TCAACGC 19275 0.0 31.085802 4 ATCAACG 19460 0.0 30.813019 3 CAACGCA 19900 0.0 30.10949 5 TATCAAC 20575 0.0 29.573359 2 AACGCAG 20695 0.0 28.995598 6 ACGCAGA 23900 0.0 25.107277 7 CGCAGAG 24240 0.0 24.755112 8 GTACATG 23365 0.0 22.197273 1 GTGGTAT 4530 0.0 22.175095 1 TACATGG 23125 0.0 21.968376 2 TGGTATC 4330 0.0 21.768549 2 ACATGGG 23740 0.0 20.840057 3 GCAGAGT 28635 0.0 20.739252 9 GAGTACT 15865 0.0 20.125315 12-13 CATGGGG 18315 0.0 18.991245 4 AGAGTAC 25795 0.0 18.716972 10-11 CAGAGTA 27840 0.0 18.653496 10-11 GTACTTT 17765 0.0 17.873762 14-15 >>END_MODULE