##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139361_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8658096 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.1962526172036 33.0 31.0 34.0 31.0 34.0 2 32.41793426637912 34.0 31.0 34.0 31.0 34.0 3 32.46497428533941 34.0 31.0 34.0 31.0 34.0 4 36.0921780031083 37.0 35.0 37.0 35.0 37.0 5 35.95544909642952 37.0 35.0 37.0 35.0 37.0 6 35.97783658208456 37.0 35.0 37.0 35.0 37.0 7 35.93316879369321 37.0 35.0 37.0 35.0 37.0 8 35.93323751549995 37.0 35.0 37.0 35.0 37.0 9 37.71281965457533 39.0 37.0 39.0 35.0 39.0 10-11 37.600546124690695 39.0 37.0 39.0 35.0 39.0 12-13 37.56527428201304 39.0 37.0 39.0 35.0 39.0 14-15 38.84910487248004 40.0 38.0 41.0 35.0 41.0 16-17 38.83548374838995 40.0 38.0 41.0 35.0 41.0 18-19 38.816405131105036 40.0 38.0 41.0 35.0 41.0 20-21 38.805941005304945 40.0 38.0 41.0 34.5 41.0 22-23 38.7284072672508 40.0 38.0 41.0 34.0 41.0 24-25 38.66545071644549 40.0 38.0 41.0 34.0 41.0 26-27 38.50239567607245 40.0 38.0 41.0 34.0 41.0 28-29 38.37109049853608 40.0 38.0 41.0 34.0 41.0 30-31 38.23807643500942 40.0 38.0 41.0 34.0 41.0 32-33 38.15177281159379 40.0 38.0 41.0 33.5 41.0 34-35 38.209464908515514 40.0 38.0 41.0 34.0 41.0 36-37 38.17249419559721 40.0 38.0 41.0 33.0 41.0 38-39 38.1127916725323 40.0 38.0 41.0 33.0 41.0 40-41 38.042253266509036 40.0 37.5 41.0 33.0 41.0 42-43 38.00974746517431 40.0 37.0 41.0 33.0 41.0 44-45 38.039093425056166 40.0 37.0 41.0 33.0 41.0 46-47 38.02448870048964 40.0 37.0 41.0 33.0 41.0 48-49 37.94365082028836 40.0 37.0 41.0 33.0 41.0 50-51 37.86536546070539 40.0 37.0 41.0 33.0 41.0 52-53 37.638868524701806 40.0 37.0 41.0 32.0 41.0 54-55 37.521329672333906 39.5 36.0 41.0 32.0 41.0 56-57 37.4578078975281 39.0 36.0 41.0 32.0 41.0 58-59 37.299360482805845 39.0 36.0 41.0 31.5 41.0 60-61 37.109503463234944 39.0 35.0 41.0 31.0 41.0 62-63 36.8624183462941 39.0 35.0 40.0 31.0 41.0 64-65 36.568914946500634 38.0 35.0 40.0 31.0 41.0 66-67 36.28595991812139 38.0 35.0 40.0 30.5 41.0 68-69 36.00396781470043 37.0 34.5 40.0 30.0 41.0 70-71 35.70242587394185 37.0 34.0 39.0 30.0 41.0 72-73 35.38883753741895 36.0 34.0 39.0 30.0 40.5 74-75 35.0328044028513 36.0 34.0 39.0 29.0 40.0 76-77 33.68993210011128 34.5 32.0 36.5 28.0 39.0 78-79 34.406527655168816 35.0 33.5 37.0 29.0 39.0 80-81 34.34343413937336 35.0 34.0 37.0 29.0 39.0 82-83 34.0565637892573 35.0 34.0 36.0 29.0 38.5 84-85 33.86438482905929 35.0 33.0 36.0 29.0 37.0 86-87 33.62247399034674 35.0 33.0 35.5 29.0 37.0 88-89 33.50399179635752 35.0 33.0 35.0 29.0 36.5 90-91 33.31725946390405 35.0 33.0 35.0 29.0 36.0 92-93 33.20767609861913 35.0 33.0 35.0 29.0 36.0 94-95 33.19933798019923 35.0 33.0 35.0 29.0 36.0 96-97 33.232762936923194 35.0 33.0 35.0 29.0 35.5 98-99 33.32940466328758 35.0 33.0 35.0 29.5 35.0 100 32.042443253697044 34.0 31.0 35.0 26.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 6.0 20 29.0 21 222.0 22 1085.0 23 4035.0 24 11249.0 25 25226.0 26 46566.0 27 74702.0 28 108343.0 29 144888.0 30 184291.0 31 228387.0 32 283685.0 33 357365.0 34 475046.0 35 657987.0 36 1022013.0 37 1795969.0 38 2287741.0 39 922068.0 40 27191.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.277324861877815 20.41401717121376 14.62125328955157 23.687404677356856 2 14.44880029050267 21.38395092870303 41.519763698623805 22.64748508217049 3 18.010622658838617 26.295273233283623 30.83815425469988 24.85594985317788 4 12.384789912239365 18.38996703201258 39.42407198996177 29.801171065786285 5 12.924435118298527 38.17118682906727 35.93757796171352 12.966800090920682 6 29.530730543990273 38.467406690801305 19.050666566875673 12.95119619833275 7 26.228087561052682 32.942057930519596 23.385395588129306 17.444458920298413 8 24.31599280026463 36.854650260288174 21.346667904814176 17.48268903463302 9 25.40736439050803 17.053206617251647 21.381248255967595 36.15818073627273 10-11 23.891749634778225 26.997068812650543 29.28088515540167 19.830296397169562 12-13 24.771624153855537 24.493092938678434 29.32918507718094 21.406097830285088 14-15 21.832762076096177 25.968873526003872 26.958796714658746 25.23956768324121 16-17 21.399634060328935 29.13848482865729 27.642992430859632 21.81888868015414 18-19 21.427629700190888 28.3441069727541 29.306940298916878 20.921323028138126 20-21 22.240323322652856 27.506617402720973 29.225039972381143 21.028019302245024 22-23 21.913438148797297 27.431224057133 29.083642994382636 21.571694799687062 24-25 21.687468067686915 27.57104946882886 29.161079354354335 21.580403109129886 26-27 21.69549240484813 27.74702196265158 29.007770531970124 21.54971510053016 28-29 21.618571916123837 27.865378677034503 29.025256197724037 21.490793209117623 30-31 21.93190865442658 27.640228940675886 28.96161678520351 21.46624561969402 32-33 21.74234643985582 27.767000895760148 28.90180222864569 21.588850435738347 34-35 21.87237221365447 27.803495217639163 28.85944833471084 21.46468423399553 36-37 21.810641757149646 27.76687574736542 28.854322042394415 21.568160453090517 38-39 21.687898436178514 27.902974044258645 28.9079877799261 21.50113973963675 40-41 21.97698369923696 27.770003689907274 28.721377866202545 21.531634744653214 42-43 21.846140794509125 27.858233811270395 28.566899307720817 21.728726086499666 44-45 21.940496404411967 27.97650309538049 28.384249462922334 21.69875103728521 46-47 21.973071853123205 27.945341974952353 28.13247975690692 21.949106415017518 48-49 21.930660142250872 28.04171555493533 28.176663846288854 21.85096045652494 50-51 21.912573307810927 28.1276180827239 28.10005058525181 21.859758024213363 52-53 22.068449324048387 28.07052540820583 27.99055830004271 21.87046696770307 54-55 22.055184528765185 27.97090649281488 28.00806405945211 21.965844918967832 56-57 22.030210405018423 28.07881251910434 28.014297080859407 21.876679995017824 58-59 22.01788739547083 28.141076298806052 28.00655079650156 21.83448550922156 60-61 22.062985526276833 28.11949039943374 28.008471976638884 21.80905209765055 62-63 22.020597565423312 28.12691870828985 27.985867388942324 21.866616337344507 64-65 21.990081052247824 28.124474089997697 27.93913801123692 21.94630684651756 66-67 22.044549606200317 28.1416053408495 27.8522789497956 21.96156610315458 68-69 22.026132960161547 28.11531262689767 27.926115628329434 21.932438784611357 70-71 21.981394399516173 27.922760811927304 27.969682142504777 22.126162646051743 72-73 22.008733481001375 27.974695875305876 27.951953093264738 22.06461755042801 74-75 21.938600552533973 28.082838121791514 27.919233880609923 22.05932744506459 76-77 22.034810080780527 28.00843706864122 27.854776161899704 22.101976688678544 78-79 22.01420197846125 28.018365537124033 27.811387476798426 22.15604500761629 80-81 22.003158369249316 28.011544877482482 27.847286005656557 22.13801074761165 82-83 22.033147710213854 27.968977344814576 27.962070915972177 22.035804028999394 84-85 22.138612438548385 27.970434547757865 27.875999718673793 22.01495329501995 86-87 21.953415200691005 27.990195852464524 27.959958736959745 22.096430209884733 88-89 22.026545632367096 27.951131194950552 27.932917431004313 22.089405741678043 90-91 22.05600459038546 27.948738871759147 27.95587971455507 22.039376823300323 92-93 22.044378350878567 27.866937942637925 28.047913487000876 22.040770219482635 94-95 21.916545271135348 27.977688534046806 28.062346655954784 22.04341953886306 96-97 21.93415989269329 28.097000035357244 28.150549270104264 21.8182908018452 98-99 22.05519974233508 28.902184767346302 27.269777859696713 21.772837630621904 100 20.27229110606558 28.798625709323943 28.268090851129823 22.66099233348065 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1210.0 1 1069.0 2 1613.0 3 2446.5 4 3282.5 5 5195.5 6 6890.5 7 8347.5 8 9660.0 9 10030.0 10 9385.5 11 8420.0 12 8945.5 13 11746.5 14 18383.0 15 28076.5 16 36530.5 17 42093.0 18 44163.5 19 42722.0 20 39445.5 21 35988.0 22 34293.5 23 36183.0 24 41803.0 25 51290.0 26 65677.5 27 82567.5 28 101024.5 29 121369.5 30 140865.5 31 161029.5 32 183707.5 33 205723.5 34 226857.5 35 245904.0 36 265143.5 37 284243.5 38 297186.5 39 307451.5 40 319772.5 41 331333.5 42 337693.5 43 342655.5 44 346413.5 45 348660.5 46 349252.0 47 345495.0 48 339596.0 49 331070.5 50 320665.5 51 308730.5 52 292605.0 53 273182.0 54 254084.0 55 233982.5 56 213042.5 57 191207.0 58 168929.0 59 146392.5 60 121599.0 61 98404.0 62 77360.5 63 58744.5 64 43811.0 65 32566.5 66 24599.0 67 18841.0 68 14287.5 69 10418.0 70 7595.0 71 5548.5 72 3953.0 73 2680.0 74 1772.0 75 1137.5 76 740.5 77 489.0 78 329.0 79 212.5 80 136.0 81 92.5 82 68.0 83 43.5 84 28.5 85 20.0 86 13.0 87 9.5 88 7.0 89 5.0 90 3.0 91 2.0 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.1549883484775405E-5 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 5.774941742387703E-6 12-13 0.0 14-15 0.0 16-17 0.0012878120085524577 18-19 4.042459219671392E-5 20-21 0.0 22-23 0.006884412390856507 24-25 0.008323949875380477 26-27 0.02151837067334992 28-29 0.016232042363780765 30-31 0.0019610011819226002 32-33 0.006069048046070561 34-35 0.03325561703262925 36-37 0.005637160393775994 38-39 0.0024471712535687183 40-41 0.00693745617333658 42-43 0.007391775171766376 44-45 0.008304665341731675 46-47 0.005047595208931637 48-49 8.572985997218067E-4 50-51 0.002666401222240058 52-53 8.581762350716342E-4 54-55 0.00495771096641449 56-57 7.13808473692982E-4 58-59 0.0012820468418598865 60-61 7.87488384546328E-4 62-63 0.0013432694380748188 64-65 4.1918511646257074E-4 66-67 0.005238113480722069 68-69 0.0038977951949976503 70-71 0.0015941449941399481 72-73 0.0013519137666010588 74-75 7.94960838639167E-4 76-77 6.404097802869317E-4 78-79 7.805563289442414E-4 80-81 9.884437914935047E-4 82-83 0.007004320380237533 84-85 6.351633160368217E-4 86-87 7.348829565276647E-5 88-89 3.78185733632037E-4 90-91 3.4199321718012503E-4 92-93 0.00237992233682007 94-95 0.0031826940481857057 96-97 7.953566212787975E-5 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 145.0 20-21 479.0 22-23 1161.0 24-25 2474.0 26-27 3203.0 28-29 5003.0 30-31 8896.0 32-33 12063.0 34-35 16148.0 36-37 21007.0 38-39 25407.0 40-41 29532.0 42-43 38894.0 44-45 43099.0 46-47 42608.0 48-49 36394.0 50-51 32236.0 52-53 30992.0 54-55 33721.0 56-57 36229.0 58-59 37943.0 60-61 38780.0 62-63 40149.0 64-65 43799.0 66-67 48085.0 68-69 50051.0 70-71 52021.0 72-73 52109.0 74-75 54837.0 76-77 54552.0 78-79 61438.0 80-81 64424.0 82-83 66133.0 84-85 70814.0 86-87 77911.0 88-89 89782.0 90-91 101674.0 92-93 115640.0 94-95 144767.0 96-97 357480.0 98-99 164979.0 100-101 6451037.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.67081221683698 #Duplication Level Percentage of deduplicated Percentage of total 1 88.35470364602581 73.92709817240906 2 8.111896678756224 13.574579674611911 3 2.018963277646109 5.067848918298519 4 0.7330048197058818 2.453244344945891 5 0.31429149035329723 1.3148512135350283 6 0.16747730979591513 0.8407777523109027 7 0.09134079894364679 0.5349791185304812 8 0.05741564730796482 0.38432110753702925 9 0.0429953709250812 0.3237711846179149 >10 0.10562475800717677 1.299018709615441 >50 0.0015820943107000037 0.0866682200533221 >100 5.705008387660755E-4 0.08535544247548044 >500 6.680417323808439E-5 0.034114915263215626 >1k 6.68032102161245E-5 0.07337122579573897 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 1.1549883484775405E-5 0.0 0.0 0.0 4 0.0 2.309976696955081E-5 0.0 0.0 1.1549883484775405E-5 5 0.0 2.309976696955081E-5 0.0 0.0 1.1549883484775405E-5 6 0.0 2.309976696955081E-5 0.0 0.0 1.1549883484775405E-5 7 0.0 3.464965045432622E-5 0.0 1.1549883484775405E-5 1.1549883484775405E-5 8 0.0 4.619953393910162E-5 0.0 1.1549883484775405E-5 1.1549883484775405E-5 9 0.0 1.3859860181730487E-4 0.0 1.1549883484775405E-5 2.309976696955081E-5 10-11 0.0 1.3859860181730487E-4 0.0 2.309976696955081E-5 2.8874708711938516E-5 12-13 0.0 1.4437354355969259E-4 0.0 2.309976696955081E-5 3.464965045432622E-5 14-15 0.0 2.13672844468345E-4 0.0 2.8874708711938516E-5 6.352435916626473E-5 16-17 0.0 2.194477862107327E-4 0.0 3.464965045432622E-5 6.929930090865243E-5 18-19 0.0 2.2522272795312038E-4 0.0 3.464965045432622E-5 7.507424265104014E-5 20-21 0.0 2.309976696955081E-4 0.0 6.929930090865243E-5 1.0394895136297865E-4 22-23 0.0 2.598723784074466E-4 0.0 1.5592342704446796E-4 1.0972389310536635E-4 24-25 0.0 2.656473201498343E-4 0.0 4.100208637095269E-4 1.1549883484775405E-4 26-27 0.0 2.656473201498343E-4 0.0 0.0011376635232503774 1.2704871833252947E-4 28-29 0.0 2.656473201498343E-4 0.0 0.0036093385889923143 1.3282366007491715E-4 30-31 0.0 3.0029697060416055E-4 0.0 0.003932735326566026 1.4437354355969259E-4 32-33 0.0 3.0029697060416055E-4 0.0 0.0046430531608797135 1.6169836878685568E-4 34-35 0.0 3.1762179583132367E-4 0.0 0.005422670296102053 1.6169836878685568E-4 36-37 0.0 3.407215628008745E-4 0.0 0.0067509068968512245 1.7324825227163108E-4 38-39 0.0 3.4649650454326216E-4 0.0 0.010625892805993374 1.7324825227163108E-4 40-41 0.0 3.753712132552007E-4 0.0 0.014229456453243298 1.7324825227163108E-4 42-43 0.0 3.9847098022475146E-4 0.0 0.01745187394549564 1.7902319401401877E-4 44-45 0.0 4.331206306790777E-4 0.0 0.02115938654410854 1.8479813575640648E-4 46-47 0.0 4.619953393910162E-4 0.0 0.025432843433475443 1.8479813575640648E-4 48-49 0.0 4.619953393910162E-4 0.0 0.029775599623750995 1.963480192411819E-4 50-51 0.0 5.717192324963825E-4 0.0 0.03426850429932863 1.963480192411819E-4 52-53 0.0 5.774941742387702E-4 0.0 0.04429380316411368 2.194477862107327E-4 54-55 0.0 5.890440577235457E-4 0.0 0.05654822954146038 2.4254755318028353E-4 56-57 0.0 6.005939412083211E-4 0.0 0.07040808972319088 2.4254755318028353E-4 58-59 0.0 6.005939412083211E-4 0.0 0.0828877388284907 2.4254755318028353E-4 60-61 0.0 6.179187664354842E-4 0.0 0.08921707497814763 2.5409743666505893E-4 62-63 0.0 6.23693708177872E-4 0.0 0.09623362919514868 2.7719720363460974E-4 64-65 0.0 6.929930090865243E-4 0.0 0.09969281929883891 2.7719720363460974E-4 66-67 0.0 6.98767950828912E-4 0.0 0.10301918574245422 2.7719720363460974E-4 68-69 0.0 7.103178343136874E-4 0.0 0.10632245241909999 2.8297214537699743E-4 70-71 0.0 7.160927760560752E-4 0.0 0.10914639893112758 2.9452202886177286E-4 72-73 0.0 7.160927760560752E-4 0.0 0.11135820161846208 3.11846854088936E-4 74-75 0.0 7.218677177984629E-4 0.0 0.11336788134481299 3.11846854088936E-4 76-77 0.0 7.738421934799522E-4 0.0 0.115244737411089 3.11846854088936E-4 78-79 0.0 8.200417274190538E-4 0.0 0.11661917354577728 3.11846854088936E-4 80-81 0.0 8.258166691614415E-4 0.0 0.11712736841910738 3.11846854088936E-4 82-83 0.0 8.315916109038292E-4 0.0 0.11743921527319633 3.2339673757371135E-4 84-85 0.0 8.315916109038292E-4 0.0 0.11752006445758975 3.291716793160991E-4 86-87 0.0 8.315916109038292E-4 0.0 0.11754893916630169 3.4649650454326216E-4 88 0.0 8.777911448429308E-4 0.0 0.11755471410804408 3.4649650454326216E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9790 0.0 51.278492 1 GTATCAA 18080 0.0 38.511524 1 TCAACGC 21110 0.0 31.938042 4 ATCAACG 21125 0.0 31.894466 3 CAACGCA 21655 0.0 31.154634 5 TATCAAC 22530 0.0 30.21904 2 AACGCAG 22525 0.0 30.049332 6 ACGCAGA 26020 0.0 26.114927 7 CGCAGAG 26365 0.0 25.72296 8 GTACATG 24600 0.0 21.232794 1 GCAGAGT 31700 0.0 21.129238 9 TACATGG 24360 0.0 20.970732 2 ACATGGG 24720 0.0 20.093775 3 GAGTACT 18220 0.0 19.811596 12-13 GTGGTAT 5285 0.0 19.382084 1 AGAGTAC 28120 0.0 19.039103 10-11 CAGAGTA 31210 0.0 18.611317 10-11 TGGTATC 5060 0.0 18.41151 2 CATGGGG 18040 0.0 18.160376 4 GTACTTT 20195 0.0 17.92932 14-15 >>END_MODULE