##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139356_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6293155 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.55970637939158 33.0 33.0 33.0 33.0 33.0 2 32.55687473135494 33.0 33.0 33.0 33.0 33.0 3 32.63469499797796 33.0 33.0 33.0 33.0 33.0 4 36.553170071291746 37.0 37.0 37.0 37.0 37.0 5 36.55773534896248 37.0 37.0 37.0 37.0 37.0 6 36.004691287597396 37.0 37.0 37.0 33.0 37.0 7 35.83946827942423 37.0 37.0 37.0 33.0 37.0 8 35.710772895312445 37.0 37.0 37.0 33.0 37.0 9 35.719840048433575 37.0 37.0 37.0 33.0 37.0 10-11 35.62404676191831 37.0 37.0 37.0 33.0 37.0 12-13 35.51933767720642 37.0 37.0 37.0 33.0 37.0 14-15 37.08551791589433 40.0 37.0 40.0 33.0 40.0 16-17 36.9964945246065 40.0 37.0 40.0 33.0 40.0 18-19 37.01577690363578 40.0 37.0 40.0 33.0 40.0 20-21 36.9222154688093 40.0 37.0 40.0 33.0 40.0 22-23 36.76485424575863 40.0 37.0 40.0 33.0 40.0 24-25 36.74998884878839 40.0 37.0 40.0 33.0 40.0 26-27 36.568717348968555 40.0 37.0 40.0 33.0 40.0 28-29 36.35556302076138 38.5 37.0 40.0 30.0 40.0 30-31 36.13560215723699 37.0 37.0 40.0 27.0 40.0 32-33 35.8951875386209 37.0 37.0 40.0 27.0 40.0 34-35 35.792622931848584 37.0 37.0 40.0 27.0 40.0 36-37 35.517033064010576 37.0 37.0 40.0 27.0 40.0 38-39 35.58099823471973 37.0 37.0 40.0 27.0 40.0 40-41 35.65258859479923 37.0 37.0 40.0 27.0 40.0 42-43 35.55838045750073 37.0 35.0 40.0 27.0 40.0 44-45 35.39545303925521 37.0 33.0 40.0 27.0 40.0 46-47 35.18233602563702 37.0 33.0 40.0 27.0 40.0 48-49 34.979030352071206 37.0 33.0 40.0 24.5 40.0 50-51 35.00466239865279 37.0 33.0 40.0 27.0 40.0 52-53 34.863586865577744 37.0 33.0 40.0 24.5 40.0 54-55 34.66399044590855 37.0 33.0 40.0 22.0 40.0 56-57 34.37203932367173 37.0 33.0 40.0 22.0 40.0 58-59 34.21002197421082 37.0 33.0 40.0 22.0 40.0 60-61 34.0695790648289 37.0 33.0 40.0 22.0 40.0 62-63 33.89893008432796 37.0 33.0 40.0 22.0 40.0 64-65 33.74614643807371 37.0 33.0 38.5 22.0 40.0 66-67 33.499924813923585 37.0 33.0 37.0 22.0 40.0 68-69 33.32789917142486 37.0 33.0 37.0 22.0 40.0 70-71 33.07923659459354 37.0 33.0 37.0 22.0 40.0 72-73 32.754736736957256 37.0 33.0 37.0 22.0 40.0 74-75 32.365362182088376 37.0 33.0 37.0 22.0 38.5 76-77 30.549078288296457 33.0 27.0 35.0 22.0 37.0 78-79 32.640757263778234 33.0 33.0 37.0 24.5 37.0 80-81 33.007000999588925 37.0 33.0 37.0 27.0 37.0 82-83 32.92451836965549 37.0 33.0 37.0 27.0 37.0 84-85 32.798948068411335 33.0 33.0 37.0 27.0 37.0 86-87 32.66111029512325 33.0 33.0 37.0 27.0 37.0 88-89 32.51008977429173 33.0 33.0 37.0 27.0 37.0 90-91 32.46357891336001 33.0 33.0 37.0 27.0 37.0 92-93 32.53844385664005 33.0 33.0 37.0 27.0 37.0 94-95 32.63190808358743 33.0 33.0 37.0 27.0 37.0 96-97 32.84145947075105 33.0 33.0 37.0 27.0 37.0 98-99 33.07862936615949 33.0 33.0 37.0 27.0 37.0 100 33.04527340886318 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 2.0 14 10.0 15 11.0 16 53.0 17 124.0 18 414.0 19 1032.0 20 2582.0 21 6732.0 22 15960.0 23 34329.0 24 65041.0 25 107609.0 26 154748.0 27 202123.0 28 241260.0 29 268670.0 30 285371.0 31 296718.0 32 308677.0 33 332129.0 34 377924.0 35 463162.0 36 668124.0 37 1284349.0 38 1144231.0 39 31769.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.77932134199777 19.971445165421795 13.261503967405854 23.987729525174576 2 15.14814254532881 21.56878105768705 40.719956752826256 22.56311964415788 3 18.126997868728147 26.888714937781227 30.46657246610337 24.517714727387258 4 12.451831415276843 17.891143209552453 39.09944729081605 30.557578084354653 5 13.045034817999818 38.40524773511783 35.59462164673256 12.955095800149783 6 30.067716431583204 37.92395070517093 18.917855987974235 13.090476875271625 7 26.553898640665928 32.6809366684914 23.562124244516465 17.203040446326206 8 25.06461385425911 36.05579395390706 21.52487901537464 17.354713176459185 9 26.468043453561847 16.016687972884824 20.934761657705874 36.58050691584746 10-11 24.508169167258117 26.415935626458282 29.22832139004595 19.847573816237656 12-13 25.45553544239943 24.119464996579936 29.082641182716085 21.342358378304553 14-15 22.588922447502725 25.28276992284803 26.629264610292484 25.49904301935676 16-17 22.165765820164925 28.15281841937788 27.305326183766333 22.376089576690866 18-19 22.203346334231398 27.42549643223471 28.960727965543516 21.41042926799038 20-21 23.066182772631414 26.704594012125334 28.661587162577757 21.56763605266549 22-23 22.72239081037831 26.715369125834492 28.498068519513943 22.064171544273258 24-25 22.48241141078228 26.85976614848326 28.624773018008025 22.03304942272643 26-27 22.44888292930416 27.037390430329726 28.511373264680962 22.00235337568515 28-29 22.36151699533638 27.077761010327865 28.466868853847778 22.09385314048798 30-31 22.643084421917116 26.992360977449852 28.339682556030976 22.024872044602056 32-33 22.45440058098097 27.1910389438402 28.26256196415264 22.091998511026187 34-35 22.52046459076705 27.215163304653338 28.28877736985503 21.97559473472458 36-37 22.615949859590785 27.17997590558962 28.19231343242151 22.011760802398076 38-39 22.41393100947278 27.337391296921265 28.26942760606536 21.979250087540592 40-41 22.59623018685731 27.168426167941867 28.19918859902358 22.036155046177246 42-43 22.4903115367342 27.234901589467693 28.025737396002278 22.24904947779583 44-45 22.556473009496887 27.347389753178415 27.77327666384664 22.32286057347806 46-47 22.62378846176408 27.255650699518114 27.551037931818385 22.56952290689942 48-49 22.44312659736111 27.387098332050375 27.63801002340605 22.531765047182468 50-51 22.47494544686744 27.491336316539538 27.52618615397489 22.507532082618134 52-53 22.605711617554878 27.389629611985722 27.408947746635043 22.595711023824357 54-55 22.51657196969697 27.32346788783356 27.490751144843962 22.66920899762551 56-57 22.502967215439305 27.47398619097402 27.370798885477093 22.65224770810958 58-59 22.401330311814423 27.461512913378357 27.486329735677344 22.650827039129876 60-61 22.4835094902474 27.54801695544244 27.468102358789626 22.500371195520536 62-63 22.391324051195525 27.67278805361099 27.405478202347737 22.530409692845748 64-65 22.342125552320134 27.608398091614195 27.408380499603712 22.641095856461963 66-67 22.413490942903717 27.70945321790656 27.247721328094425 22.629334511095294 68-69 22.36718652589319 27.66688906150411 27.28410985659599 22.681814556006714 70-71 22.36561027999013 27.449264940679726 27.287110918393726 22.89801386093642 72-73 22.364513286418187 27.448953097268248 27.26241451638927 22.92411909992429 74-75 22.307331039733054 27.47386512544237 27.223915660409048 22.99488817441553 76-77 22.34203680237936 27.398433391864245 27.308172780641872 22.951357025114525 78-79 22.306152020528426 27.412735061271054 27.291223165779332 22.98988975242119 80-81 22.349248463194254 27.474956740810818 27.25082533668305 22.924969459311882 82-83 22.34387669293327 27.408343162040683 27.32586262019457 22.92191752483148 84-85 22.355013662785282 27.4213859223309 27.338382696253067 22.885217718630752 86-87 22.243812835293408 27.464204022455853 27.37540806258705 22.916575079663698 88-89 22.21623560498469 27.331053810705804 27.51814692541124 22.934563658898263 90-91 22.21960874249351 27.28345694519377 27.640246905465414 22.856687406847307 92-93 22.24022699893904 27.257130015465936 27.659586329518138 22.843056656076886 94-95 22.063519502475856 27.32248655218666 27.781261060958112 22.83273288437937 96-97 22.03390741100399 27.45837863015951 27.942399897707748 22.565314061128756 98-99 23.183672660688607 29.28976386202317 28.191831317022224 19.334732160266 100 22.16498970775136 30.059640619647794 21.81057140387552 25.964798268725332 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1075.0 1 1013.5 2 1499.0 3 2250.0 4 3234.0 5 5739.0 6 7948.0 7 8778.5 8 8667.5 9 7821.5 10 6894.0 11 6176.0 12 6597.0 13 9153.0 14 14832.5 15 22855.5 16 30115.0 17 35026.5 18 37356.0 19 36240.0 20 33426.5 21 30613.0 22 28693.5 23 29330.5 24 32215.5 25 37789.0 26 46123.0 27 55644.5 28 66316.5 29 78542.0 30 91361.5 31 105517.0 32 121530.0 33 137180.5 34 153287.0 35 169898.5 36 186885.5 37 202992.5 38 216688.0 39 228737.0 40 241063.5 41 252131.0 42 259524.0 43 267103.0 44 274327.0 45 279901.0 46 283599.0 47 286066.5 48 286728.0 49 283608.5 50 279105.0 51 272299.0 52 262118.5 53 249359.0 54 234677.5 55 219151.0 56 203350.5 57 186092.0 58 166936.0 59 147381.0 60 126462.0 61 106129.5 62 88074.5 63 70963.5 64 55778.5 65 43665.5 66 33824.0 67 26603.5 68 21358.0 69 16423.5 70 12399.5 71 9545.0 72 7285.0 73 5360.0 74 3885.5 75 2859.5 76 2173.5 77 1618.5 78 1173.0 79 845.0 80 601.0 81 437.0 82 330.5 83 235.5 84 163.5 85 123.5 86 94.0 87 68.5 88 49.0 89 33.5 90 22.5 91 17.5 92 17.5 93 13.0 94 6.5 95 4.5 96 4.0 97 3.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.2903758130858054E-4 3 0.0031621658770521303 4 0.002431212960748623 5 3.178056157841337E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.668479482866702E-4 12-13 0.002359706697197193 14-15 0.00294764708639784 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.005346795038620435 26-27 0.016530961052576603 28-29 0.006940168614041115 30-31 0.0 32-33 0.0 34-35 1.623929576669978E-4 36-37 0.018668212800647406 38-39 0.05179948420485083 40-41 0.05910782622315612 42-43 0.010901664240234369 44-45 4.875132311511205E-4 46-47 8.501574534111591E-6 48-49 0.034592686365628116 50-51 0.03869357522827606 52-53 0.046653499817762505 54-55 0.03009609556146174 56-57 0.0010536495115263007 58-59 0.0059824302710248765 60-61 0.02729898797901922 62-63 0.039435906276867855 64-65 0.02408229876897783 66-67 0.06441501258570245 68-69 0.07959795728562163 70-71 0.0737678562325751 72-73 0.04568291038348833 74-75 0.021275470488529444 76-77 0.005396609015269553 78-79 4.5374685071326425E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0023508770330588485 92-93 0.0029360138520390243 94-95 8.090969206927052E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2058.0 20-21 6212.0 22-23 7099.0 24-25 12799.0 26-27 17785.0 28-29 26375.0 30-31 25959.0 32-33 28598.0 34-35 32378.0 36-37 33584.0 38-39 36589.0 40-41 47541.0 42-43 52141.0 44-45 64277.0 46-47 65859.0 48-49 50299.0 50-51 59354.0 52-53 47952.0 54-55 58796.0 56-57 63626.0 58-59 72835.0 60-61 66288.0 62-63 65941.0 64-65 75713.0 66-67 82945.0 68-69 71479.0 70-71 66732.0 72-73 62405.0 74-75 64747.0 76-77 55416.0 78-79 86268.0 80-81 101909.0 82-83 116372.0 84-85 122272.0 86-87 120798.0 88-89 120180.0 90-91 131465.0 92-93 139999.0 94-95 156174.0 96-97 270487.0 98-99 379739.0 100-101 3123710.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 90.40108257965414 #Duplication Level Percentage of deduplicated Percentage of total 1 93.26140651747563 84.3093211208101 2 4.9793291606521795 9.002734932867952 3 1.0578965453522038 2.8690497887134625 4 0.3322179021029153 1.201314320097804 5 0.14844821969163924 0.6709939883573259 6 0.07683845240319642 0.41677675685965104 7 0.042252424608036306 0.26737654483271905 8 0.026836780792045243 0.19408592292430063 9 0.015849731129156115 0.1289549567404941 >10 0.057812231382891405 0.822432726881893 >50 8.181777413687492E-4 0.048803220781923055 >100 2.701866370669803E-4 0.05499597168893027 >500 2.3670031749601024E-5 0.013159748443381114 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5890280789206687E-5 2 0.0 4.767084236762006E-5 0.0 0.0 1.5890280789206687E-5 3 0.0 4.767084236762006E-5 0.0 0.0 1.5890280789206687E-5 4 0.0 2.224639310488936E-4 0.0 1.5890280789206687E-5 3.1780561578413374E-5 5 0.0 2.3835421183810029E-4 0.0 1.5890280789206687E-5 3.1780561578413374E-5 6 1.5890280789206687E-5 2.3835421183810029E-4 0.0 1.5890280789206687E-5 3.1780561578413374E-5 7 1.5890280789206687E-5 2.3835421183810029E-4 0.0 3.1780561578413374E-5 3.1780561578413374E-5 8 1.5890280789206687E-5 2.7013477341651367E-4 0.0 3.1780561578413374E-5 4.767084236762006E-5 9 1.5890280789206687E-5 3.8136673894096046E-4 0.0 6.356112315682675E-5 4.767084236762006E-5 10-11 4.767084236762006E-5 3.8136673894096046E-4 0.0 6.356112315682675E-5 4.767084236762006E-5 12-13 4.767084236762006E-5 3.8136673894096046E-4 0.0 6.356112315682675E-5 5.56159827622234E-5 14-15 4.767084236762006E-5 5.482146872276307E-4 0.0 8.739654434063678E-5 7.945140394603344E-5 16-17 6.356112315682675E-5 5.79995248806044E-4 0.0 1.0328682512984345E-4 9.534168473524011E-5 18-19 6.356112315682675E-5 6.356112315682675E-4 0.0 1.271222463136535E-4 1.112319655244468E-4 20-21 6.356112315682675E-5 6.912272143304908E-4 0.0 1.668479482866702E-4 1.271222463136535E-4 22-23 7.945140394603342E-5 7.945140394603344E-4 0.0 3.2575075617873706E-4 1.271222463136535E-4 24-25 1.1123196552444679E-4 8.898557241955744E-4 0.0 6.197209507790608E-4 1.3506738670825683E-4 26-27 1.7479308868127355E-4 8.898557241955744E-4 0.0 0.0012314967611635182 1.4301252710286017E-4 28-29 1.9068336947048023E-4 8.898557241955744E-4 0.0 0.003932844495328654 1.4301252710286017E-4 30-31 1.9068336947048023E-4 0.0010090328301146246 0.0 0.007452541690137936 1.4301252710286017E-4 32-33 1.9068336947048023E-4 0.001016977970509228 0.0 0.016057128737493355 1.4301252710286017E-4 34-35 1.9862850986508357E-4 0.001136155076428278 0.0 0.028713737386096484 1.5890280789206685E-4 36-37 2.065736502596869E-4 0.0012553321823473283 0.0 0.04861631407457785 1.827382290758769E-4 38-39 2.065736502596869E-4 0.0012950578843203449 0.0 0.08812749725694027 2.065736502596869E-4 40-41 2.065736502596869E-4 0.001414234990239395 0.0 0.1361638160827121 2.065736502596869E-4 42-43 2.065736502596869E-4 0.0014460155518178084 0.0 0.17817771848937458 2.065736502596869E-4 44-45 2.065736502596869E-4 0.0015651926577368584 0.0 0.23268932673674808 2.065736502596869E-4 46-47 2.3835421183810029E-4 0.0016605343424720986 0.0 0.29323129654362556 2.3040907144349695E-4 48-49 2.3835421183810029E-4 0.001668479482866702 0.0 0.352811904362756 2.54244492627307E-4 50-51 2.54244492627307E-4 0.0020101205198346456 0.0 0.4057027039696305 2.54244492627307E-4 52-53 2.54244492627307E-4 0.0020498462218076626 0.0 0.4880699744404834 2.9397019460032365E-4 54-55 2.54244492627307E-4 0.002065736502596869 0.0 0.5811075684612885 3.336958965733404E-4 56-57 2.54244492627307E-4 0.0020975170641752824 0.0 0.6842196005024507 3.336958965733404E-4 58-59 2.621896330219103E-4 0.0021213524853590923 0.0 0.7807053854545136 3.495861773625471E-4 60-61 2.7013477341651367E-4 0.002129297625753696 0.0 0.831737022209051 3.8136673894096046E-4 62-63 2.7013477341651367E-4 0.002169023327726713 0.0 0.8880839578875779 3.8136673894096046E-4 64-65 2.7013477341651367E-4 0.002478883803116243 0.0 0.9125232097413778 3.8136673894096046E-4 66-67 2.7013477341651367E-4 0.0024868289435108467 0.0 0.9215568343700418 3.8136673894096046E-4 68-69 2.7013477341651367E-4 0.0025186095050892597 0.0 0.9293271816759638 3.8136673894096046E-4 70-71 2.7013477341651367E-4 0.0025424449262730696 0.0 0.9350556279004728 4.131473005193738E-4 72-73 3.178056157841337E-4 0.0025583352070622763 0.0 0.942063241728513 4.290375813085805E-4 74-75 3.178056157841337E-4 0.0025901157686406898 0.0 0.9480062067436763 4.290375813085805E-4 76-77 3.178056157841337E-4 0.00268545745337593 0.0 0.953099041736617 4.290375813085805E-4 78-79 3.178056157841337E-4 0.002717238014954343 0.0 0.9563009333156421 4.290375813085805E-4 80-81 3.178056157841337E-4 0.002717238014954343 0.0 0.9576516071827248 4.6876328328159726E-4 82-83 3.178056157841337E-4 0.002717238014954343 0.0 0.960448296601625 5.164341256492172E-4 84-85 3.178056157841337E-4 0.0027490185765327566 0.0 0.9628477290007953 5.32324406438424E-4 86-87 3.178056157841337E-4 0.0027887442785057732 0.0 0.9642619639910347 5.402695468330273E-4 88 3.178056157841337E-4 0.002892031103635617 0.0 0.9644447022201106 5.402695468330273E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7265 0.0 48.014004 1 GTATCAA 13440 0.0 37.223892 1 TCAACGC 16125 0.0 30.394655 4 ATCAACG 16265 0.0 30.109503 3 CAACGCA 16465 0.0 29.717684 5 TATCAAC 17100 0.0 28.947958 2 AACGCAG 17055 0.0 28.690317 6 ACGCAGA 19685 0.0 24.630257 7 CGCAGAG 19820 0.0 24.442587 8 GTACATG 18725 0.0 24.310516 1 TACATGG 18515 0.0 24.081802 2 ACATGGG 19135 0.0 22.919527 3 CATGGGG 14190 0.0 20.574823 4 GCAGAGT 23515 0.0 20.51614 9 GAGTACT 13755 0.0 18.850197 12-13 CAGAGTA 22355 0.0 18.32908 10-11 AGAGTAC 20865 0.0 18.07123 10-11 GTGGTAT 3180 0.0 17.62229 1 ATGGGGG 8510 0.0 16.795881 5 GTACTTT 15835 0.0 16.39536 14-15 >>END_MODULE