##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139355_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 6783769 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.58388928042803 33.0 33.0 33.0 33.0 33.0 2 32.581683869247314 33.0 33.0 33.0 33.0 33.0 3 32.654005317692864 33.0 33.0 33.0 33.0 33.0 4 36.573823636978204 37.0 37.0 37.0 37.0 37.0 5 36.575675557348724 37.0 37.0 37.0 37.0 37.0 6 36.05736280230061 37.0 37.0 37.0 33.0 37.0 7 35.89947652993491 37.0 37.0 37.0 33.0 37.0 8 35.781657807039124 37.0 37.0 37.0 33.0 37.0 9 35.784984129029155 37.0 37.0 37.0 33.0 37.0 10-11 35.69325834945146 37.0 37.0 37.0 33.0 37.0 12-13 35.591669542403345 37.0 37.0 37.0 33.0 37.0 14-15 37.21071413251247 40.0 37.0 40.0 33.0 40.0 16-17 37.126491040599994 40.0 37.0 40.0 33.0 40.0 18-19 37.14478699083061 40.0 37.0 40.0 33.0 40.0 20-21 37.053764617875025 40.0 37.0 40.0 33.0 40.0 22-23 36.90436856608402 40.0 37.0 40.0 33.0 40.0 24-25 36.88544882511974 40.0 37.0 40.0 33.0 40.0 26-27 36.71265234320086 40.0 37.0 40.0 33.0 40.0 28-29 36.51092369299987 40.0 37.0 40.0 33.0 40.0 30-31 36.301197628108056 38.5 37.0 40.0 30.0 40.0 32-33 36.07243960079062 37.0 37.0 40.0 27.0 40.0 34-35 35.973212374174224 37.0 37.0 40.0 27.0 40.0 36-37 35.71346506052815 37.0 37.0 40.0 27.0 40.0 38-39 35.766839007660806 37.0 37.0 40.0 27.0 40.0 40-41 35.83664946015115 37.0 37.0 40.0 27.0 40.0 42-43 35.743511338353755 37.0 37.0 40.0 27.0 40.0 44-45 35.58902546373544 37.0 35.0 40.0 27.0 40.0 46-47 35.39193760624856 37.0 33.0 40.0 27.0 40.0 48-49 35.19473420462033 37.0 33.0 40.0 27.0 40.0 50-51 35.2138039797507 37.0 33.0 40.0 27.0 40.0 52-53 35.08473939561827 37.0 33.0 40.0 27.0 40.0 54-55 34.885609791707424 37.0 33.0 40.0 27.0 40.0 56-57 34.61120397654841 37.0 33.0 40.0 27.0 40.0 58-59 34.466033192844705 37.0 33.0 40.0 24.5 40.0 60-61 34.337436257043024 37.0 33.0 40.0 22.0 40.0 62-63 34.16538945820943 37.0 33.0 40.0 22.0 40.0 64-65 34.00612031136327 37.0 33.0 38.5 22.0 40.0 66-67 33.75555174655569 37.0 33.0 37.0 22.0 40.0 68-69 33.569638240690466 37.0 33.0 37.0 22.0 40.0 70-71 33.33150416865074 37.0 33.0 37.0 22.0 40.0 72-73 33.017230320936015 37.0 33.0 37.0 22.0 40.0 74-75 32.64602028362944 37.0 33.0 37.0 22.0 37.0 76-77 30.71971890682075 33.0 27.0 35.0 22.0 37.0 78-79 32.826812591808476 35.0 33.0 37.0 27.0 37.0 80-81 33.21158993602414 37.0 33.0 37.0 27.0 37.0 82-83 33.166059271957174 37.0 33.0 37.0 27.0 37.0 84-85 33.06966666530993 37.0 33.0 37.0 27.0 37.0 86-87 32.94057333607062 35.0 33.0 37.0 27.0 37.0 88-89 32.785137963804665 33.0 33.0 37.0 27.0 37.0 90-91 32.71613092078934 33.0 33.0 37.0 27.0 37.0 92-93 32.78015009187333 33.0 33.0 37.0 27.0 37.0 94-95 32.86174629110662 33.0 33.0 37.0 27.0 37.0 96-97 33.02841374321841 33.0 33.0 37.0 27.0 37.0 98-99 33.230104448703514 33.0 33.0 37.0 27.0 37.0 100 33.202295970949756 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 1.0 14 2.0 15 13.0 16 44.0 17 131.0 18 394.0 19 1058.0 20 2588.0 21 6569.0 22 15836.0 23 34940.0 24 65619.0 25 108006.0 26 156826.0 27 205633.0 28 246180.0 29 277367.0 30 294819.0 31 308479.0 32 322097.0 33 350952.0 34 401478.0 35 502614.0 36 755536.0 37 1502446.0 38 1202755.0 39 21385.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.30047843617294 19.506548573005446 13.070243557857522 24.1227294329641 2 15.47206436099518 21.23810537438367 40.29545076636237 22.994379498258777 3 18.547540766591922 26.473397363654495 30.00129578037009 24.97776608938349 4 12.750849660099107 17.483325581789597 38.33748919267733 31.42833556543396 5 13.473150459494033 38.214260338578896 35.06317877120172 13.249410430725353 6 30.911709994842102 37.18316469797247 18.506673797412617 13.398451509772812 7 27.200513460879932 32.27517033672579 22.997304300898218 17.527011901496056 8 25.632609247160392 35.60205248734148 21.072843134841413 17.69249513065672 9 26.855425059432303 15.735353016884861 20.37293722707834 37.0362846966045 10-11 25.14612654736263 25.998566724164274 28.67674205184573 20.178564676627367 12-13 25.966823952194318 23.68925983422737 28.550367362366075 21.793548851212236 14-15 23.109969067832154 24.792656591612094 26.06326655072939 26.034107789826365 16-17 22.733159103737172 27.68126391096159 26.7101665755423 22.87541040975894 18-19 22.79236660328499 26.950925068350646 28.328713728312387 21.927994600051978 20-21 23.740055720635432 26.22037402902438 27.999785241694177 22.039785008646014 22-23 23.32000530020924 26.1970371239795 27.89031371997548 22.592643855835785 24-25 23.057207456452097 26.378635275436537 28.059571187102865 22.504586081008505 26-27 23.04277586747155 26.56556628137733 27.934696053842558 22.45696179730857 28-29 22.9803897080442 26.581013116025176 27.89738820602199 22.54120896990863 30-31 23.267856286043536 26.475636373187903 27.778123109047016 22.47838423172154 32-33 23.046418734660588 26.6700301802167 27.77852117387722 22.505029911245497 34-35 23.128748251073368 26.68309110708919 27.788372086370668 22.399788555466777 36-37 23.171677734427032 26.667096541385433 27.6233407441313 22.537884980056237 38-39 22.985636322358467 26.834061389616497 27.723688655800604 22.456613632224432 40-41 23.246644962733036 26.643616606242826 27.60327177725721 22.506466653766925 42-43 23.056567174179538 26.718502799124938 27.50706286837617 22.717867158319358 44-45 23.096946041478393 26.841280492750606 27.265673184576723 22.796100281194278 46-47 23.21008632126484 26.711507991332294 27.03157913256487 23.046826554837992 48-49 23.030236283079816 26.922408147837864 27.08149431578557 22.96586125329675 50-51 23.041105025021196 27.028785372564535 26.95069563223812 22.97941397017615 52-53 23.246295112552822 26.936064361920366 26.802549227849052 23.01509129767776 54-55 23.115554551756436 26.831949687502345 26.897082562151624 23.155413198589596 56-57 23.172587351200878 27.03212244343244 26.770165357375138 23.025124847991545 58-59 23.08651757877555 27.085360657228623 26.835678947946935 22.992442816048893 60-61 23.060325212033177 27.13531748575328 26.869385408712215 22.934971893501327 62-63 23.097132060252758 27.324555158687712 26.722182558146663 22.856130222912864 64-65 23.040110039525256 27.159793837470303 26.80583015587672 22.99426596712772 66-67 23.0207881008899 27.190953130637936 26.7911132235204 22.99714554495176 68-69 22.996997024040493 27.199477046211644 26.830163888342234 22.97336204140563 70-71 23.066461608516015 26.891060997359396 26.890873498614965 23.151603895509627 72-73 23.041385000918474 26.935293658503763 26.824281002210753 23.19904033836701 74-75 22.892984309596823 27.081496070124878 26.793258867404663 23.232260752873636 76-77 22.96940448888525 26.951849698020265 26.88413171466273 23.19461409843176 78-79 22.80832018230214 26.995973272469016 26.920203572463524 23.27550297276532 80-81 22.892153187875255 27.001932985244103 26.926578041336786 23.179335785543856 82-83 22.868366969491856 26.984153478499106 27.039427133935302 23.108052418073736 84-85 22.902244678800507 26.992005621989833 26.95369965520718 23.152050044002475 86-87 22.76806600995001 27.022617951428263 26.997607201413267 23.211708837208462 88-89 22.783883507573528 26.899154307888896 27.061159717535993 23.255802467001587 90-91 22.78592922212232 26.965973033539868 27.121717783693327 23.126379960644485 92-93 22.864677428054627 26.880041875642707 27.107141242725646 23.14813945357702 94-95 22.684321140774262 26.934478588518378 27.21301175033898 23.16818852036838 96-97 22.609255238702737 27.07868953168346 27.378459400443777 22.933595829170024 98-99 23.836634198814952 28.900701339683998 27.540709363235482 19.72195509826556 100 22.738496785568152 29.56175561057749 21.273740062372447 26.426007541481916 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 974.0 1 913.0 2 1370.5 3 2116.0 4 3107.0 5 5481.5 6 7537.5 7 8350.0 8 8271.5 9 7457.5 10 6516.0 11 5764.0 12 6157.5 13 8593.0 14 14122.5 15 22332.0 16 30050.0 17 34991.5 18 36664.5 19 34775.0 20 31555.0 21 28281.0 22 25790.5 23 25674.5 24 27629.5 25 32146.5 26 39146.0 27 47421.0 28 56700.0 29 67786.0 30 79832.0 31 92648.0 32 107681.0 33 123023.0 34 139445.0 35 156602.0 36 174934.5 37 193670.0 38 209726.0 39 225315.5 40 241295.0 41 255126.0 42 266928.5 43 278677.0 44 289418.0 45 299612.5 46 307389.5 47 312572.5 48 316720.0 49 316529.0 50 313806.0 51 309546.0 52 300613.5 53 287969.5 54 273850.5 55 257658.0 56 240301.0 57 221415.0 58 199836.0 59 177250.5 60 152825.5 61 128438.0 62 106242.5 63 85618.5 64 67268.5 65 52807.5 66 41284.5 67 32707.0 68 26147.0 69 19996.0 70 15234.5 71 11676.0 72 8807.0 73 6524.5 74 4806.5 75 3562.0 76 2643.5 77 1945.0 78 1428.5 79 1064.5 80 783.5 81 564.0 82 428.0 83 297.0 84 204.0 85 162.5 86 138.0 87 107.0 88 68.0 89 42.5 90 27.5 91 17.0 92 13.5 93 7.5 94 2.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.4741067981530622E-5 2 4.8645524339051055E-4 3 0.0031251064120844914 4 0.002564945828786328 5 4.4223203944591866E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.2529907784301027E-4 12-13 0.002063749517414287 14-15 0.003184070684010614 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.005743591017289762 26-27 0.018468603818000466 28-29 0.008191501547576828 30-31 0.0 32-33 0.0 34-35 1.355025790657549E-4 36-37 0.01694993232134166 38-39 0.0469210317058526 40-41 0.053494839278620185 42-43 0.009637001893246844 44-45 3.0328669457941134E-4 46-47 0.0 48-49 0.033425146140889726 50-51 0.04229071592848751 52-53 0.047016764871928365 54-55 0.028916042636745593 56-57 8.64320029554806E-4 58-59 0.005849167687566916 60-61 0.027583242104002613 62-63 0.036816691777211086 64-65 0.020992418067915585 66-67 0.05539679149938935 68-69 0.07065193081016184 70-71 0.0712166256827566 72-73 0.045617918023896156 74-75 0.021022502310828584 76-77 0.004883580608067638 78-79 4.3808098159966666E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0019165936560961764 92-93 0.0020090121665340063 94-95 4.629964225056915E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2294.0 20-21 6538.0 22-23 7619.0 24-25 13672.0 26-27 18848.0 28-29 27068.0 30-31 27167.0 32-33 29719.0 34-35 34156.0 36-37 34867.0 38-39 37916.0 40-41 45334.0 42-43 53814.0 44-45 61369.0 46-47 62274.0 48-49 51658.0 50-51 63074.0 52-53 53834.0 54-55 59200.0 56-57 66936.0 58-59 64147.0 60-61 73994.0 62-63 55744.0 64-65 68127.0 66-67 81116.0 68-69 59128.0 70-71 77691.0 72-73 66653.0 74-75 53577.0 76-77 42650.0 78-79 75225.0 80-81 76093.0 82-83 92091.0 84-85 116524.0 86-87 130542.0 88-89 135295.0 90-91 142287.0 92-93 148769.0 94-95 165247.0 96-97 295033.0 98-99 421242.0 100-101 3585237.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.50495830514913 #Duplication Level Percentage of deduplicated Percentage of total 1 92.2603734755588 81.65500507671818 2 5.519558664765489 9.770166189757882 3 1.2437837899735213 3.3024309741668056 4 0.4600420982383522 1.6286402689279473 5 0.19316081317623676 0.8547844858175767 6 0.1038628209364387 0.5515424781860806 7 0.06740160434120371 0.4175763327342875 8 0.03691483729750329 0.26137169086855144 9 0.026503603722157893 0.21111303081292015 >10 0.0861796884789874 1.1556752156147805 >50 0.0018123700803925778 0.10004059857526096 >100 3.575688073143507E-4 0.06365776642062214 >500 4.866462365815346E-5 0.027995891399111985 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.896427192612248E-5 0.0 0.0 0.0 3 0.0 5.896427192612248E-5 0.0 0.0 0.0 4 0.0 1.7689281577836747E-4 0.0 0.0 0.0 5 0.0 1.7689281577836747E-4 0.0 0.0 0.0 6 0.0 1.7689281577836747E-4 0.0 0.0 0.0 7 0.0 1.7689281577836747E-4 0.0 1.474106798153062E-5 0.0 8 0.0 2.5059815568602054E-4 0.0 1.474106798153062E-5 0.0 9 0.0 3.8326776751979616E-4 0.0 2.948213596306124E-5 0.0 10-11 1.474106798153062E-5 3.8326776751979616E-4 0.0 4.422320394459186E-5 0.0 12-13 3.685266995382655E-5 3.8326776751979616E-4 0.0 7.37053399076531E-5 0.0 14-15 5.1593737935357174E-5 5.085668453628065E-4 0.0 8.844640788918373E-5 3.685266995382655E-5 16-17 5.896427192612248E-5 5.159373793535717E-4 0.0 8.844640788918373E-5 6.63348059168878E-5 18-19 5.896427192612248E-5 5.527900493073983E-4 0.0 1.0318747587071435E-4 8.844640788918373E-5 20-21 7.37053399076531E-5 5.896427192612248E-4 0.0 1.326696118337756E-4 1.1055800986147966E-4 22-23 7.37053399076531E-5 6.559775251781127E-4 0.0 1.4004014582454089E-4 1.326696118337756E-4 24-25 7.37053399076531E-5 7.591650010488271E-4 0.0 1.6952228178760214E-4 1.5478121380607153E-4 26-27 7.37053399076531E-5 7.81276603021123E-4 0.0 2.727097576583165E-4 1.6215174779683682E-4 28-29 7.37053399076531E-5 7.81276603021123E-4 0.0 7.002007291227045E-4 1.6215174779683682E-4 30-31 7.37053399076531E-5 8.402408749472454E-4 0.0 0.001614146943977603 1.6952228178760214E-4 32-33 9.581694187994904E-5 8.402408749472454E-4 0.0 0.0037294901993272472 1.7689281577836747E-4 34-35 1.326696118337756E-4 9.72910486781021E-4 0.0 0.006346029766048932 1.9163388375989808E-4 36-37 1.6215174779683682E-4 0.0011055800986147966 0.0 0.010746238558535823 1.9163388375989808E-4 38-39 1.6215174779683682E-4 0.0011350622345778578 0.0 0.019340281191768175 2.063749517414287E-4 40-41 1.6215174779683682E-4 0.001208767574485511 0.0 0.02824388625261267 2.211160197229593E-4 42-43 1.6215174779683682E-4 0.0012382497104485722 0.0 0.03639569684639911 2.2848655371372463E-4 44-45 1.6215174779683682E-4 0.0013193255843469906 0.0 0.04640488200585839 2.5059815568602054E-4 46-47 1.6215174779683682E-4 0.0013709193222823477 0.0 0.05583916551403799 2.948213596306124E-4 48-49 1.6215174779683682E-4 0.0013709193222823477 0.0 0.06362244940828617 3.2430349559367365E-4 50-51 1.6215174779683682E-4 0.0015772942740237765 0.0 0.07133202796262667 3.2430349559367365E-4 52-53 1.990044177506634E-4 0.0015994058759960725 0.0 0.08017666875154505 3.390445635752043E-4 54-55 2.063749517414287E-4 0.0016067764099868377 0.0 0.08745875633442117 3.6115616554750025E-4 56-57 2.063749517414287E-4 0.0016215174779683683 0.0 0.09440179935372209 3.9063830151056143E-4 58-59 2.063749517414287E-4 0.0016215174779683683 0.0 0.10035719081826047 4.127499034828574E-4 60-61 2.063749517414287E-4 0.0016362585459498988 0.0 0.10537652446597165 4.127499034828574E-4 62-63 2.063749517414287E-4 0.0016952228178760214 0.0 0.11189207651380817 4.2749097146438803E-4 64-65 2.063749517414287E-4 0.0017689281577836745 0.0 0.11711041457927002 4.2749097146438803E-4 66-67 2.063749517414287E-4 0.0017762986917744398 0.0 0.12277098468417777 4.2749097146438803E-4 68-69 2.211160197229593E-4 0.0017910397597559705 0.0 0.1289696037704114 4.2749097146438803E-4 70-71 2.211160197229593E-4 0.0017984102937467358 0.0 0.1331339554751938 4.4960257343668394E-4 72-73 2.211160197229593E-4 0.001805780827737501 0.0 0.13890508358996304 5.23307913344337E-4 74-75 2.211160197229593E-4 0.0018426334976913276 0.0 0.14334214505240378 5.380489813258677E-4 76-77 2.3585708770448993E-4 0.0019163388375989807 0.0 0.1472632691354909 5.45419515316633E-4 78-79 2.5059815568602054E-4 0.0019310799055805114 0.0 0.14991666137216642 5.45419515316633E-4 80-81 2.5059815568602054E-4 0.0019310799055805114 0.0 0.15130969229642105 5.896427192612248E-4 82-83 2.5059815568602054E-4 0.001945820973562042 0.0 0.15362403996952137 6.338659232058168E-4 84-85 2.5059815568602054E-4 0.0019605620415435727 0.0 0.1555035261371665 6.338659232058168E-4 86-87 2.5059815568602054E-4 0.0019605620415435727 0.0 0.15666807050770742 6.338659232058168E-4 88 2.5059815568602054E-4 0.002034267381451226 0.0 0.15683022225550428 6.338659232058168E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7275 0.0 47.275513 1 GTATCAA 13835 0.0 38.894806 1 TCAACGC 17005 0.0 30.724646 4 ATCAACG 17195 0.0 30.385368 3 CAACGCA 17430 0.0 29.880629 5 TATCAAC 17905 0.0 29.479174 2 AACGCAG 18085 0.0 28.84476 6 GTACATG 21560 0.0 25.970026 1 TACATGG 21320 0.0 25.876444 2 ACGCAGA 21210 0.0 24.497902 7 ACATGGG 21950 0.0 24.477758 3 CGCAGAG 21815 0.0 23.838232 8 CATGGGG 16935 0.0 21.96054 4 GCAGAGT 25480 0.0 20.425829 9 GAGTACT 14545 0.0 18.527199 12-13 AGAGTAC 22385 0.0 18.508064 10-11 ATGGGGG 10125 0.0 18.162092 5 GTGGTAT 3835 0.0 17.807613 1 CAGAGTA 24160 0.0 17.557001 10-11 GTATAAT 3645 0.0 16.817123 1 >>END_MODULE