##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139352_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9133554 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.65807187432187 33.0 33.0 33.0 33.0 33.0 2 32.65189760743737 33.0 33.0 33.0 33.0 33.0 3 32.7314059784395 33.0 33.0 33.0 33.0 33.0 4 36.67470833368916 37.0 37.0 37.0 37.0 37.0 5 36.69136636187841 37.0 37.0 37.0 37.0 37.0 6 36.3391825350789 37.0 37.0 37.0 37.0 37.0 7 36.2304722783705 37.0 37.0 37.0 37.0 37.0 8 36.14563553245539 37.0 37.0 37.0 33.0 37.0 9 36.14321730620961 37.0 37.0 37.0 33.0 37.0 10-11 36.079409066832035 37.0 37.0 37.0 33.0 37.0 12-13 35.99026600160244 37.0 37.0 37.0 33.0 37.0 14-15 37.82164385298428 40.0 37.0 40.0 33.0 40.0 16-17 37.76342226695107 40.0 37.0 40.0 33.0 40.0 18-19 37.79346889502159 40.0 37.0 40.0 33.0 40.0 20-21 37.70945786486711 40.0 37.0 40.0 33.0 40.0 22-23 37.57633786986162 40.0 37.0 40.0 33.0 40.0 24-25 37.574236845040346 40.0 37.0 40.0 33.0 40.0 26-27 37.451067854178916 40.0 37.0 40.0 33.0 40.0 28-29 37.284397356397506 40.0 37.0 40.0 33.0 40.0 30-31 37.111390821741495 40.0 37.0 40.0 33.0 40.0 32-33 36.91832057946746 40.0 37.0 40.0 33.0 40.0 34-35 36.832260950434176 40.0 37.0 40.0 33.0 40.0 36-37 36.60456323196112 40.0 37.0 40.0 33.0 40.0 38-39 36.66170180603692 40.0 37.0 40.0 33.0 40.0 40-41 36.706240382822216 40.0 37.0 40.0 33.0 40.0 42-43 36.61727733125668 40.0 37.0 40.0 33.0 40.0 44-45 36.47286277741537 40.0 37.0 40.0 33.0 40.0 46-47 36.27122365518913 38.5 37.0 40.0 30.0 40.0 48-49 36.070662230219334 37.0 37.0 40.0 27.0 40.0 50-51 36.08326022718846 37.0 37.0 40.0 27.0 40.0 52-53 35.94910064018147 37.0 37.0 40.0 27.0 40.0 54-55 35.756961437251704 37.0 37.0 40.0 27.0 40.0 56-57 35.5086639429607 37.0 35.0 40.0 27.0 40.0 58-59 35.36908368923412 37.0 33.0 40.0 27.0 40.0 60-61 35.23854614719704 37.0 33.0 40.0 27.0 40.0 62-63 35.05640248002367 37.0 33.0 40.0 27.0 40.0 64-65 34.91202853031868 37.0 33.0 40.0 27.0 40.0 66-67 34.66459536006531 37.0 33.0 38.5 27.0 40.0 68-69 34.47785551129243 37.0 33.0 37.0 27.0 40.0 70-71 34.24036163978842 37.0 33.0 37.0 27.0 40.0 72-73 33.938357845481704 37.0 33.0 37.0 27.0 40.0 74-75 33.57925473399166 37.0 33.0 37.0 27.0 40.0 76-77 31.540493993676318 33.0 30.0 35.0 24.5 37.0 78-79 33.58425800683065 37.0 33.0 37.0 27.0 37.0 80-81 33.91665228179082 37.0 33.0 37.0 27.0 37.0 82-83 33.85483883878068 37.0 33.0 37.0 27.0 37.0 84-85 33.741990400234286 37.0 33.0 37.0 27.0 37.0 86-87 33.60237678387441 37.0 33.0 37.0 27.0 37.0 88-89 33.43664731821575 37.0 33.0 37.0 27.0 37.0 90-91 33.349090937133795 37.0 33.0 37.0 27.0 37.0 92-93 33.378569689086675 37.0 33.0 37.0 27.0 37.0 94-95 33.414420507985625 35.0 33.0 37.0 27.0 37.0 96-97 33.51519029302473 33.0 33.0 37.0 27.0 37.0 98-99 33.65394916099251 33.0 33.0 37.0 27.0 37.0 100 33.60829581440623 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 10.0 15 20.0 16 50.0 17 181.0 18 544.0 19 1384.0 20 3266.0 21 6936.0 22 14721.0 23 29723.0 24 55068.0 25 90003.0 26 134662.0 27 182521.0 28 228762.0 29 271582.0 30 308460.0 31 343265.0 32 386658.0 33 444598.0 34 537208.0 35 692909.0 36 1062852.0 37 2296995.0 38 2022346.0 39 18827.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.28312943679974 19.492532698662536 12.836470885265472 24.387866979272253 2 15.147506593864996 21.25637625923935 40.60813555387919 22.98798159301647 3 18.372103743141377 26.480150299823357 30.033632202299938 25.114113754735328 4 12.58056735226449 17.52819959976775 38.82797009634195 31.06326295162581 5 13.22037546615211 38.19258507614725 35.485040706502716 13.101998751197918 6 30.40221801940406 37.74273409890608 18.740755241606934 13.114292640082931 7 26.853676017024696 32.47596718648623 23.286192866435123 17.38416393005395 8 25.064602453765534 36.09971540103666 21.395439278072917 17.440242867124887 9 26.48190397735646 15.887211046214869 20.695021893996575 36.9358630824321 10-11 24.564751204639645 26.31193237715429 29.14040836628469 19.982908051921378 12-13 25.559234981173436 23.922861988510267 28.966109990069384 21.55179304024692 14-15 22.52560969467638 25.204390327221603 26.512805942237495 25.757194035864522 16-17 22.25468311678017 28.117592560354925 27.123280817083906 22.50444350578099 18-19 22.32597518994249 27.367670897878305 28.69933215482166 21.607021757357543 20-21 23.056219918836575 26.69008688696196 28.489842086829135 21.763851107372325 22-23 22.728731632647804 26.65844343453282 28.409298239020025 22.203526693799354 24-25 22.488549368830636 26.74496410223564 28.525227142662544 22.241259386271174 26-27 22.496564715940824 26.96611627249616 28.359802818731506 22.17751619283151 28-29 22.413358637318943 27.053437917954188 28.428502718226234 22.104700726500635 30-31 22.749186225772558 26.942173144619876 28.233996095473202 22.074644534134364 32-33 22.429167677842127 27.16615644390183 28.243980473636892 22.16069540461915 34-35 22.579603302243903 27.17480198403855 28.22245359478569 22.02314111893186 36-37 22.623487456384215 27.118074025008056 28.151359742001958 22.107078776605768 38-39 22.420429338155863 27.243731177400342 28.260615069596078 22.075224414847717 40-41 22.64827972172175 27.0873021380429 28.142841681900293 22.121576458335056 42-43 22.52498010844264 27.12047281841593 28.01843212674853 22.336114946392904 44-45 22.575120358869015 27.257560410494396 27.83273449363339 22.334584737003194 46-47 22.649453445553643 27.214254894193036 27.570972479934742 22.56531918031858 48-49 22.561983418557823 27.272889023732745 27.6198160463583 22.545311511351137 50-51 22.544498101881953 27.414307189381816 27.546907833980068 22.494286874756174 52-53 22.709144407408537 27.34410567173276 27.42314172309468 22.523608197764023 54-55 22.628840215614698 27.255185638906955 27.468914924123837 22.64705922135451 56-57 22.603191143042675 27.400741255679712 27.428791774782972 22.567275826494637 58-59 22.602239761207883 27.42948793354898 27.43295195509436 22.535320350148783 60-61 22.62921824109126 27.44914535240792 27.44003351618072 22.4816028903201 62-63 22.582734063913325 27.573376156558695 27.370499070859584 22.473390708668394 64-65 22.579653166092914 27.482096964711978 27.383659400918166 22.55459046827695 66-67 22.632210241545327 27.48117428883477 27.3260339548399 22.560581514780008 68-69 22.541676447762693 27.51222974994224 27.388936854358647 22.557156947936416 70-71 22.589261089259498 27.290136354192235 27.434839450089537 22.685763106458726 72-73 22.592933804807096 27.336514921792414 27.344620866298452 22.72593040710204 74-75 22.48558191159517 27.446768283875272 27.306296778016044 22.761353026513515 76-77 22.581909411186103 27.365050326055684 27.330279132755024 22.72276113000318 78-79 22.490332761592143 27.353191941917192 27.360127846707254 22.796347449783408 80-81 22.45262735437298 27.411001856042745 27.39962682107504 22.736743968509238 82-83 22.50645599604744 27.38387535426413 27.453126330443723 22.65654231924471 84-85 22.597031370453593 27.334547426512103 27.414104189456882 22.654317013577426 86-87 22.416029754831353 27.36786621110535 27.496837066280396 22.7192669677829 88-89 22.432773879926337 27.33759780843456 27.48574355561193 22.74388475602717 90-91 22.471917046931818 27.317295990762545 27.545111425684322 22.665675536621315 92-93 22.438600711712713 27.292217608631496 27.598790616599512 22.67039106305628 94-95 22.31926625400772 27.324072128784476 27.67369878214831 22.682962835059488 96-97 22.329207994527348 27.42724177256572 27.811916670812497 22.431633562094433 98-99 23.414410944931248 29.326864808320313 28.103220271145517 19.155503975602922 100 22.445026486514102 30.197705801647633 21.812330181274675 25.544937530563587 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1289.0 1 1229.0 2 2056.5 3 3135.5 4 4237.5 5 7103.0 6 9687.0 7 11328.0 8 12377.0 9 12054.0 10 10750.5 11 9449.5 12 9874.5 13 12693.0 14 19477.0 15 29023.0 16 37429.0 17 43069.5 18 44489.5 19 42128.0 20 38300.5 21 34274.0 22 31891.0 23 32935.5 24 37189.0 25 44832.5 26 56232.0 27 69731.5 28 84181.5 29 101175.5 30 119388.0 31 138253.5 32 160147.5 33 182019.0 34 204765.5 35 227443.5 36 250714.0 37 275416.0 38 296000.5 39 313822.5 40 333076.5 41 349822.0 42 360297.5 43 369223.5 44 377634.5 45 385957.5 46 392585.0 47 396651.5 48 398546.0 49 394702.5 50 388433.5 51 379109.5 52 364170.5 53 346081.0 54 325961.0 55 303523.5 56 279204.0 57 252836.0 58 225440.5 59 198336.5 60 169181.0 61 140862.0 62 115311.5 63 91809.5 64 71186.0 65 54805.0 66 42532.0 67 33628.5 68 26814.0 69 20473.5 70 15475.5 71 11937.5 72 9054.5 73 6683.0 74 4915.0 75 3667.0 76 2715.5 77 1945.5 78 1381.5 79 1032.0 80 772.0 81 553.5 82 421.0 83 308.0 84 210.0 85 149.0 86 114.0 87 91.5 88 62.5 89 39.0 90 27.5 91 20.0 92 14.0 93 7.5 94 3.5 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 7.007129973721072E-4 3 0.0037553837202911377 4 0.003908664688466286 5 1.0948640583939176E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.4780664788317888E-4 12-13 0.0020145498674448083 14-15 0.0032189003316781175 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.006157878912850879 26-27 0.019190302127284797 28-29 0.008437497162045353 30-31 0.0 32-33 1.1068738136734005E-5 34-35 1.6104363382853695E-4 36-37 0.016395397447903918 38-39 0.043654574903708825 40-41 0.04997990678367684 42-43 0.00894672401166128 44-45 3.3577555987586774E-4 46-47 0.0 48-49 0.04275907292093608 50-51 0.053930533987214195 52-53 0.05779498290460637 54-55 0.03589584139093858 56-57 0.0014971888356344672 58-59 0.006081044947686022 60-61 0.02850465207691248 62-63 0.0416620058279671 64-65 0.02225271849076199 66-67 0.05529599984295789 68-69 0.0699043837727774 70-71 0.07324341016677657 72-73 0.04675238733856347 74-75 0.021386542459542364 76-77 0.0052048829456269605 78-79 5.45878415665606E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.002328386027327397 92-93 0.002806065090806347 94-95 7.661053766159298E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 1519.0 20-21 5122.0 22-23 5874.0 24-25 11209.0 26-27 16599.0 28-29 26899.0 30-31 25351.0 32-33 28310.0 34-35 34173.0 36-37 38396.0 38-39 40534.0 40-41 45875.0 42-43 52414.0 44-45 63742.0 46-47 65861.0 48-49 50539.0 50-51 52421.0 52-53 50179.0 54-55 54808.0 56-57 58554.0 58-59 65332.0 60-61 52050.0 62-63 55541.0 64-65 55588.0 66-67 81228.0 68-69 59008.0 70-71 67207.0 72-73 64080.0 74-75 55877.0 76-77 45240.0 78-79 71850.0 80-81 72743.0 82-83 89592.0 84-85 119782.0 86-87 132976.0 88-89 148051.0 90-91 159948.0 92-93 173986.0 94-95 201254.0 96-97 400426.0 98-99 616029.0 100-101 5617387.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.03176049039631 #Duplication Level Percentage of deduplicated Percentage of total 1 90.82037370852485 78.13436638540095 2 6.281001675732857 10.807312636128541 3 1.5830943352044664 4.085891780400415 4 0.5999629273285452 2.064634674681858 5 0.2644649051446248 1.137619068875887 6 0.1437307665794165 0.741924653127685 7 0.08934300041071881 0.5380434928979837 8 0.056460181744868554 0.38858950664950215 9 0.03920705854005549 0.3035747042865901 >10 0.11975505531281819 1.5682389981599802 >50 0.0022085198412106666 0.12853638338743317 >100 3.162097714716046E-4 0.04619215432200723 >500 6.124241821611238E-5 0.03540606918508144 >1k 2.041344588487342E-5 0.01966949249609227 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.0948640583939176E-5 2 0.0 7.664048408757424E-5 0.0 0.0 1.0948640583939176E-5 3 0.0 7.664048408757424E-5 0.0 0.0 1.0948640583939176E-5 4 0.0 9.853776525545259E-5 0.0 1.0948640583939176E-5 1.0948640583939176E-5 5 0.0 1.2043504642333094E-4 0.0 1.0948640583939176E-5 1.0948640583939176E-5 6 0.0 1.2043504642333094E-4 0.0 1.0948640583939176E-5 2.189728116787835E-5 7 0.0 1.2043504642333094E-4 0.0 1.0948640583939176E-5 2.189728116787835E-5 8 0.0 1.313836870072701E-4 0.0 1.0948640583939176E-5 2.189728116787835E-5 9 0.0 2.1897281167878352E-4 0.0 2.189728116787835E-5 3.284592175181753E-5 10-11 0.0 2.1897281167878352E-4 0.0 2.737160145984794E-5 3.832024204378711E-5 12-13 1.6422960875908764E-5 2.1897281167878352E-4 0.0 4.37945623357567E-5 4.9268882627726294E-5 14-15 2.189728116787835E-5 3.667794595619624E-4 0.0 4.37945623357567E-5 5.474320291969588E-5 16-17 2.737160145984794E-5 3.72253779853932E-4 0.0 6.569184350363505E-5 5.474320291969588E-5 18-19 3.284592175181753E-5 4.269969827736279E-4 0.0 8.75891246715134E-5 7.664048408757424E-5 20-21 3.284592175181753E-5 4.926888262772629E-4 0.0 1.313836870072701E-4 7.664048408757424E-5 22-23 4.37945623357567E-5 4.981631465692325E-4 0.0 1.5328096817514847E-4 1.0948640583939176E-4 24-25 5.474320291969588E-5 6.076495524086243E-4 0.0 2.0802417109484436E-4 1.368580072992397E-4 26-27 6.569184350363505E-5 6.569184350363506E-4 0.0 2.846646551824186E-4 1.5328096817514847E-4 28-29 6.569184350363505E-5 6.569184350363506E-4 0.0 7.992507626275599E-4 1.5328096817514847E-4 30-31 6.569184350363505E-5 6.897643567881681E-4 0.0 0.0022773172414593487 1.5328096817514847E-4 32-33 6.569184350363505E-5 7.007129973721072E-4 0.0 0.005611178299268828 1.5328096817514847E-4 34-35 6.569184350363505E-5 8.101994032114991E-4 0.0 0.01077346233459615 1.5328096817514847E-4 36-37 6.569184350363505E-5 9.361087699267996E-4 0.0 0.017983142159120096 1.5328096817514847E-4 38-39 6.569184350363505E-5 9.799033322625563E-4 0.0 0.029725559185394865 1.6422960875908763E-4 40-41 6.569184350363505E-5 0.0010839154178099784 0.0 0.041489873492837503 1.9707553051090518E-4 42-43 6.569184350363505E-5 0.0011277099801457352 0.0 0.05175422404028049 2.0254985080287477E-4 44-45 6.569184350363505E-5 0.0012536193468610356 0.0 0.06378678004202964 2.1349849138681395E-4 46-47 6.569184350363505E-5 0.0013466827918245186 0.0 0.07555109434947228 2.572930537225706E-4 48-49 6.569184350363505E-5 0.001352157112116488 0.0 0.08412935424698864 2.737160145984794E-4 50-51 6.569184350363505E-5 0.0015656556035033022 0.0 0.09143209751647606 2.79190334890449E-4 52-53 6.569184350363505E-5 0.0015875528846711806 0.0 0.09944650242391953 3.2298489722620567E-4 54-55 6.569184350363505E-5 0.001609450165839059 0.0 0.1061306475004144 3.613051392699928E-4 56-57 6.569184350363505E-5 0.0016532447281748157 0.0 0.11149548138654461 3.613051392699928E-4 58-59 6.569184350363505E-5 0.0016587190484667852 0.0 0.11595157810420785 3.667794595619624E-4 60-61 6.569184350363505E-5 0.001713462251386481 0.0 0.11972338478537489 3.72253779853932E-4 62-63 6.569184350363505E-5 0.0017517824934302681 0.0 0.12376890748114042 4.160483421896887E-4 64-65 6.569184350363505E-5 0.0019105377818973862 0.0 0.1272067806244973 4.160483421896887E-4 66-67 6.569184350363505E-5 0.0019214864224813256 0.0 0.131586236858073 4.324713030655975E-4 68-69 6.569184350363505E-5 0.001954332344233143 0.0 0.1362065631844953 4.3794562335756703E-4 70-71 6.569184350363505E-5 0.00199265258627693 0.0 0.13935429735237784 4.65317224817415E-4 72-73 6.569184350363505E-5 0.0020090755471528386 0.0 0.14353120373515063 5.58380669780898E-4 74-75 6.569184350363505E-5 0.0020583444297805654 0.0 0.14729206177573373 5.58380669780898E-4 76-77 6.569184350363505E-5 0.002195202437079805 0.0 0.15024819473339732 5.638549900728676E-4 78-79 7.664048408757424E-5 0.002271842921167379 0.0 0.1521970527573385 5.693293103648372E-4 80-81 7.664048408757424E-5 0.0022827915617513184 0.0 0.15294703463733833 5.967009118246851E-4 82-83 7.664048408757424E-5 0.0023046888429191963 0.0 0.1543758322335424 6.350211538684723E-4 84-85 7.664048408757424E-5 0.0023320604443790444 0.0 0.15555281109631586 6.350211538684723E-4 86-87 7.664048408757424E-5 0.002364906366130862 0.0 0.1561933065704763 6.350211538684723E-4 88 7.664048408757424E-5 0.002441546850218436 0.0 0.15626994705456387 6.350211538684723E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9795 0.0 49.271114 1 GTATCAA 18250 0.0 38.62431 1 TCAACGC 21520 0.0 32.038258 4 ATCAACG 21950 0.0 31.509373 3 CAACGCA 22155 0.0 31.060915 5 TATCAAC 22855 0.0 30.486622 2 AACGCAG 22655 0.0 30.300756 6 ACGCAGA 26450 0.0 25.807816 7 CGCAGAG 26900 0.0 25.36131 8 GTACATG 26020 0.0 24.54405 1 TACATGG 25980 0.0 24.18695 2 CTCGTAT 2485 0.0 23.73876 9 ACATGGG 26155 0.0 23.403677 3 AATCTCG 2545 0.0 23.177326 6 TCTCGTA 2815 0.0 20.955194 8 GCAGAGT 32560 0.0 20.927107 9 CATGGGG 19715 0.0 20.922197 4 GAGTACT 19445 0.0 19.070448 12-13 CAGAGTA 31265 0.0 18.375795 10-11 AGAGTAC 28880 0.0 18.309557 10-11 >>END_MODULE