##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139351_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7961904 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60544412492288 33.0 33.0 33.0 33.0 33.0 2 32.60776593136516 33.0 33.0 33.0 33.0 33.0 3 32.67024822203332 33.0 33.0 33.0 33.0 33.0 4 36.59062631250013 37.0 37.0 37.0 37.0 37.0 5 36.58916372264725 37.0 37.0 37.0 37.0 37.0 6 36.10361855656637 37.0 37.0 37.0 33.0 37.0 7 35.95891284295816 37.0 37.0 37.0 33.0 37.0 8 35.84423914179322 37.0 37.0 37.0 33.0 37.0 9 35.852482270572466 37.0 37.0 37.0 33.0 37.0 10-11 35.76682436763869 37.0 37.0 37.0 33.0 37.0 12-13 35.677354436828175 37.0 37.0 37.0 33.0 37.0 14-15 37.35123439066837 40.0 37.0 40.0 33.0 40.0 16-17 37.271873599581205 40.0 37.0 40.0 33.0 40.0 18-19 37.29009731843037 40.0 37.0 40.0 33.0 40.0 20-21 37.20445851963977 40.0 37.0 40.0 33.0 40.0 22-23 37.07418820711999 40.0 37.0 40.0 33.0 40.0 24-25 37.05295992029317 40.0 37.0 40.0 33.0 40.0 26-27 36.88473119208721 40.0 37.0 40.0 33.0 40.0 28-29 36.707383794098085 40.0 37.0 40.0 33.0 40.0 30-31 36.5170887852811 40.0 37.0 40.0 33.0 40.0 32-33 36.29840777808464 38.5 37.0 40.0 33.0 40.0 34-35 36.20140456833916 37.0 37.0 40.0 27.0 40.0 36-37 35.98506067371767 37.0 37.0 40.0 27.0 40.0 38-39 36.027257770768244 37.0 37.0 40.0 27.0 40.0 40-41 36.07312641407567 37.0 37.0 40.0 27.0 40.0 42-43 35.98979647031835 37.0 37.0 40.0 27.0 40.0 44-45 35.85165933776847 37.0 37.0 40.0 27.0 40.0 46-47 35.675450500074106 37.0 37.0 40.0 27.0 40.0 48-49 35.49484231564901 37.0 33.0 40.0 27.0 40.0 50-51 35.48740552814119 37.0 33.0 40.0 27.0 40.0 52-53 35.36906712246473 37.0 33.0 40.0 27.0 40.0 54-55 35.1895779575909 37.0 33.0 40.0 27.0 40.0 56-57 34.94297341212881 37.0 33.0 40.0 27.0 40.0 58-59 34.810543555884536 37.0 33.0 40.0 27.0 40.0 60-61 34.68489957996279 37.0 33.0 40.0 27.0 40.0 62-63 34.523548136856846 37.0 33.0 40.0 27.0 40.0 64-65 34.34935827695531 37.0 33.0 40.0 27.0 40.0 66-67 34.10369898753491 37.0 33.0 37.0 27.0 40.0 68-69 33.903142795371096 37.0 33.0 37.0 27.0 40.0 70-71 33.672765749745054 37.0 33.0 37.0 27.0 40.0 72-73 33.374331015806035 37.0 33.0 37.0 22.0 40.0 74-75 33.02391893123168 37.0 33.0 37.0 22.0 38.5 76-77 31.035093574392903 33.0 30.0 35.0 22.0 37.0 78-79 33.11460337863094 35.0 33.0 37.0 27.0 37.0 80-81 33.46447782144118 37.0 33.0 37.0 27.0 37.0 82-83 33.4133827609416 37.0 33.0 37.0 27.0 37.0 84-85 33.31512578350649 37.0 33.0 37.0 27.0 37.0 86-87 33.18635407682564 37.0 33.0 37.0 27.0 37.0 88-89 33.03106868326907 33.0 33.0 37.0 27.0 37.0 90-91 32.96464190689982 33.0 33.0 37.0 27.0 37.0 92-93 33.01743291437879 33.0 33.0 37.0 27.0 37.0 94-95 33.0830163000232 33.0 33.0 37.0 27.0 37.0 96-97 33.21601996573451 33.0 33.0 37.0 27.0 37.0 98-99 33.409607725590725 33.0 33.0 37.0 27.0 37.0 100 33.42948929880784 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 2.0 15 9.0 16 35.0 17 111.0 18 375.0 19 1012.0 20 2686.0 21 6973.0 22 17175.0 23 38055.0 24 73030.0 25 119784.0 26 173424.0 27 225897.0 28 270172.0 29 301414.0 30 320948.0 31 335486.0 32 354219.0 33 388546.0 34 454613.0 35 582714.0 36 912667.0 37 1864959.0 38 1499666.0 39 17932.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.40591145032646 19.401113100584986 13.003447416597838 24.18952803249072 2 15.318494433340124 20.709253333326636 40.9296765356262 23.042575697707047 3 18.98288828797847 25.713161751065076 29.467810771748425 25.83613918920803 4 12.60636632973424 17.261326692152217 38.249060871408844 31.883246106704703 5 13.545666966092531 37.91532779094046 35.22232872940945 13.31667651355756 6 31.327267949977795 37.0667619202643 18.304001153492933 13.301968976264975 7 27.67171018389571 31.888653769249164 22.52934725161218 17.910288795242945 8 25.276014380479843 36.366715800642666 20.740214903369846 17.617054915507644 9 26.200428942624782 16.245297607205515 20.352217258585384 37.202056191584326 10-11 24.898557415931112 26.260469714928348 28.593708807691836 20.247264061448703 12-13 25.80707920919545 23.731823282902724 28.577915826453054 21.883181681448775 14-15 22.758999487732552 25.172936578627464 25.99792141376521 26.07014251987478 16-17 22.561695041788997 28.13978917605638 26.676408055158667 22.622107726995957 18-19 22.534697730593084 27.33182289060506 28.285715326384242 21.847764052417613 20-21 23.304725695288756 26.594057427649947 28.159183629871325 21.942033247189975 22-23 22.938797841699472 26.598783754889503 28.022444564629527 22.43997383878149 24-25 22.771625148435323 26.71066317545864 28.17479683141513 22.342914844690906 26-27 22.768073269910825 26.909900575245025 28.010735046531998 22.31129110831215 28-29 22.607690566851613 26.88305657276603 28.105633025562827 22.403619834819533 30-31 22.893057551864597 26.793325437558913 27.983520724629912 22.33009628594658 32-33 22.67520405659001 27.01145956853484 27.944888740812523 22.368447634062626 34-35 22.79581662750792 27.045786292067064 27.965001349095132 22.19339573132988 36-37 22.85846230978297 27.008840920663747 27.79676416412932 22.335932605423963 38-39 22.65734621937466 27.098889578607675 27.933804837249316 22.30995936476835 40-41 22.84114987180039 26.965214959737015 27.885225760146408 22.308409408316184 42-43 22.727135666986577 27.038489757145882 27.745776728104104 22.488597847763437 44-45 22.788969841535984 27.172506909798788 27.52436356561435 22.514159683050877 46-47 22.88608509862296 27.063070782595073 27.250705200279274 22.800138918502697 48-49 22.740655187671145 27.17436437430037 27.350336577280604 22.73464386074788 50-51 22.72683542460402 27.321839158947547 27.26960499928099 22.681720417167448 52-53 22.882496218040423 27.24373266750944 27.182436196023037 22.6913349184271 54-55 22.8019466410675 27.187864379637457 27.20260354348455 22.807585435810495 56-57 22.839685482223388 27.391178834790047 27.108435946816655 22.660699736169914 58-59 22.734331771439685 27.448843257263245 27.159209171680782 22.657615799616288 60-61 22.76736572955761 27.475972780319445 27.177652470254998 22.579009019867943 62-63 22.73109576881307 27.63635633032237 27.086017113352394 22.546530787512165 64-65 22.69927128560244 27.563097952931297 27.092149320436036 22.645481441030224 66-67 22.76853048882538 27.52499999092395 27.041355221871406 22.665114298379272 68-69 22.702141114228912 27.50460159558159 27.12250360827135 22.67075368191815 70-71 22.706399708917537 27.242461883634622 27.195987216100843 22.855151191346998 72-73 22.683741333357 27.292092110784772 27.185850248493047 22.83831630736518 74-75 22.594232907343077 27.41083927061404 27.130895654884352 22.864032167158534 76-77 22.669774891398298 27.323473260027402 27.207577892917044 22.799173955657253 78-79 22.638044204208754 27.299759065003563 27.195163457560795 22.867033273226888 80-81 22.594755507686934 27.433182300550886 27.171520688690336 22.800541503071848 82-83 22.58277673292992 27.32993655769407 27.32299120571232 22.764295503663693 84-85 22.627891532011326 27.323166767590518 27.30419181007723 22.744749890320925 86-87 22.524766476852882 27.36836500651325 27.353720932079533 22.753147584554334 88-89 22.567119961941255 27.26023825079252 27.32627387910991 22.846367908156324 90-91 22.550517844415293 27.284349002053354 27.397529059875954 22.7676040936554 92-93 22.58223413584505 27.249425819083473 27.415725352503806 22.752614692567676 94-95 22.417221508173935 27.312592024984017 27.509238695823594 22.76094777101845 96-97 22.421635112875514 27.41647320873433 27.59334331772284 22.568548360667315 98-99 22.608672563180857 28.117342931629384 26.72601000797942 22.547974497210337 100 20.7802252233435 27.6080413605702 27.937780111835863 23.67395330425044 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 979.0 1 897.0 2 1253.0 3 1892.0 4 2844.5 5 5208.5 6 7283.5 7 8151.0 8 8217.5 9 7464.5 10 6520.0 11 5799.5 12 6204.5 13 8686.5 14 14554.0 15 23189.0 16 31169.5 17 36564.0 18 38946.0 19 38137.0 20 35806.0 21 32691.0 22 30200.0 23 30562.0 24 33730.0 25 39841.0 26 48595.5 27 58973.5 28 71265.5 29 85865.5 30 101827.5 31 118762.0 32 137216.0 33 156189.0 34 176238.0 35 196487.0 36 217358.5 37 237590.0 38 255056.5 39 269905.5 40 284160.0 41 298543.5 42 309620.0 43 320058.5 44 329193.5 45 338045.0 46 346259.0 47 352251.0 48 356880.5 49 356937.5 50 354545.5 51 348199.0 52 335959.5 53 320169.0 54 303525.0 55 284888.5 56 264229.5 57 242277.0 58 217428.0 59 192154.0 60 165452.5 61 138314.0 62 114009.5 63 92094.5 64 72216.0 65 55987.5 66 43577.0 67 34564.5 68 27691.5 69 21577.0 70 16668.0 71 12952.0 72 9992.5 73 7467.0 74 5408.0 75 3988.5 76 3016.0 77 2253.5 78 1668.5 79 1218.5 80 880.5 81 643.5 82 495.0 83 355.5 84 252.5 85 190.5 86 150.0 87 122.5 88 86.5 89 55.5 90 35.0 91 20.0 92 13.0 93 8.5 94 5.0 95 3.0 96 3.0 97 2.5 98 1.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 4.77272772944763E-4 3 0.0035293065578283784 4 0.0033660290302420124 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.3815790795769454E-4 12-13 0.0017458135641926858 14-15 0.003045753879976448 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.006025837051417517 26-27 0.01862447407311696 28-29 0.007865780797078866 30-31 0.0 32-33 0.0 34-35 1.7919637593249315E-4 36-37 0.01422972590384319 38-39 0.041107658191308266 40-41 0.046888545142065405 42-43 0.008208077847372394 44-45 3.0317605921476606E-4 46-47 0.0 48-49 0.03231385512541136 50-51 0.04722911275763146 52-53 0.04831049177587447 54-55 0.027753572173809866 56-57 9.560224809379163E-4 58-59 0.006369865877614389 60-61 0.030170335331912157 62-63 0.03612335184536414 64-65 0.01840331912232049 66-67 0.04750690014863869 68-69 0.06269886092549821 70-71 0.0722449836709632 72-73 0.04829486118525831 74-75 0.021314395223771078 76-77 0.004735920883903181 78-79 4.124535932422381E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.002079602271838677 92-93 0.0024693480262717835 94-95 6.147955083218363E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2315.0 20-21 7170.0 22-23 8280.0 24-25 14517.0 26-27 19909.0 28-29 27928.0 30-31 28636.0 32-33 31331.0 34-35 36096.0 36-37 37660.0 38-39 40832.0 40-41 48378.0 42-43 56417.0 44-45 66023.0 46-47 67810.0 48-49 53194.0 50-51 61581.0 52-53 55413.0 54-55 64318.0 56-57 65381.0 58-59 67098.0 60-61 66881.0 62-63 61803.0 64-65 60443.0 66-67 75387.0 68-69 56024.0 70-71 60340.0 72-73 57037.0 74-75 53602.0 76-77 47011.0 78-79 68563.0 80-81 84988.0 82-83 100382.0 84-85 110142.0 86-87 120119.0 88-89 128537.0 90-91 142414.0 92-93 154907.0 94-95 175607.0 96-97 341748.0 98-99 108672.0 100-101 5027010.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.21258739917346 #Duplication Level Percentage of deduplicated Percentage of total 1 91.37856450182731 79.69361043026623 2 5.996338315559168 10.45912358841433 3 1.4770007939011294 3.8643918248025244 4 0.5446869824979759 1.9001424426518712 5 0.23393139569795723 1.0200881146359364 6 0.12270373621633628 0.6420786191383412 7 0.06911747644490597 0.4219539768683173 8 0.04689234496177487 0.3271682186664786 9 0.0314204715621937 0.24662345600169563 >10 0.09755627460321523 1.2719589232881692 >50 0.0015097401715923019 0.08594382550782827 >100 2.343025910656903E-4 0.03807064404669677 >500 4.366396529752088E-5 0.028845935711654395 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2559809814335867E-5 0.0 0.0 0.0 3 0.0 1.2559809814335867E-5 0.0 0.0 0.0 4 0.0 3.76794294430076E-5 0.0 0.0 0.0 5 1.2559809814335867E-5 3.76794294430076E-5 0.0 0.0 0.0 6 1.2559809814335867E-5 3.76794294430076E-5 0.0 2.5119619628671734E-5 1.2559809814335867E-5 7 1.2559809814335867E-5 3.76794294430076E-5 0.0 3.76794294430076E-5 1.2559809814335867E-5 8 1.2559809814335867E-5 3.76794294430076E-5 0.0 3.76794294430076E-5 1.2559809814335867E-5 9 1.2559809814335867E-5 7.53588588860152E-5 0.0 3.76794294430076E-5 1.2559809814335867E-5 10-11 2.5119619628671734E-5 1.130382883290228E-4 0.0 5.023923925734347E-5 1.2559809814335867E-5 12-13 2.5119619628671734E-5 1.130382883290228E-4 0.0 5.023923925734347E-5 1.2559809814335867E-5 14-15 3.76794294430076E-5 1.695574324935342E-4 0.0 5.023923925734347E-5 4.3959334350175534E-5 16-17 3.76794294430076E-5 1.8839714721503802E-4 0.0 5.65191441645114E-5 5.023923925734347E-5 18-19 6.907895397884727E-5 1.9467705212220594E-4 0.0 6.279904907167934E-5 6.279904907167934E-5 20-21 9.4198573607519E-5 2.1351676684370975E-4 0.0 7.53588588860152E-5 8.791866870035107E-5 22-23 1.130382883290228E-4 2.386363864723815E-4 0.0 8.163876379318314E-5 1.1931819323619073E-4 24-25 1.1931819323619075E-4 2.574761011938853E-4 1.2559809814335867E-5 1.3815790795769454E-4 1.507177177720304E-4 26-27 1.255980981433587E-4 2.6375600610105323E-4 1.2559809814335867E-5 2.009569570293739E-4 1.5699762267919833E-4 28-29 1.3815790795769454E-4 2.763158159153891E-4 1.2559809814335867E-5 4.521531533160912E-4 1.7583733740070213E-4 30-31 1.3815790795769454E-4 3.139952453583967E-4 1.2559809814335867E-5 0.0011555025029188998 1.8839714721503802E-4 32-33 1.4443781286486247E-4 3.139952453583967E-4 1.2559809814335867E-5 0.0026124404413818605 2.072368619365418E-4 34-35 1.5699762267919833E-4 3.7679429443007603E-4 1.2559809814335867E-5 0.0042389358123383555 2.1351676684370975E-4 36-37 1.6327752758636628E-4 4.584330582232592E-4 1.2559809814335867E-5 0.006688098726133849 2.1351676684370975E-4 38-39 1.6327752758636628E-4 5.086722974806026E-4 1.2559809814335867E-5 0.011730862366589701 2.1979667175087768E-4 40-41 1.9467705212220594E-4 5.714713465522819E-4 1.2559809814335867E-5 0.016679427433438032 2.260765766580456E-4 42-43 2.1351676684370975E-4 6.028708710881217E-4 1.2559809814335867E-5 0.02176615040824406 2.3235648156521356E-4 44-45 2.1351676684370975E-4 6.970694446956406E-4 1.2559809814335867E-5 0.027700660545517758 2.6375600610105323E-4 46-47 2.1351676684370975E-4 7.787082084888238E-4 1.2559809814335867E-5 0.03436363965202294 2.82595720822557E-4 48-49 2.1351676684370975E-4 7.912680183031597E-4 1.2559809814335867E-5 0.03980203730163036 3.014354355440608E-4 50-51 2.1979667175087768E-4 8.917464968178465E-4 1.2559809814335867E-5 0.04395933435017553 3.0771534045122875E-4 52-53 2.260765766580456E-4 9.168661164465183E-4 1.2559809814335867E-5 0.04951077028811199 3.4539476989423637E-4 54-55 2.260765766580456E-4 9.231460213536863E-4 1.2559809814335867E-5 0.05623026853878168 3.7679429443007603E-4 56-57 2.260765766580456E-4 9.54545545889526E-4 1.2559809814335867E-5 0.06237201553799192 3.9563400915157984E-4 58-59 2.386363864723815E-4 9.796651655181977E-4 1.2559809814335867E-5 0.06764085575510581 4.270335336874195E-4 60-61 2.386363864723815E-4 0.0010110646900540372 1.2559809814335867E-5 0.07168511451532197 4.270335336874195E-4 62-63 2.386363864723815E-4 0.0010675838342185488 1.2559809814335867E-5 0.07643272262514092 4.521531533160912E-4 64-65 2.449162913795494E-4 0.0011178230734758922 1.2559809814335867E-5 0.08043930195591406 4.521531533160912E-4 66-67 2.511961962867174E-4 0.0011303828832902282 1.2559809814335867E-5 0.08529994835406204 4.521531533160912E-4 68-69 2.574761011938853E-4 0.0011429426931045638 1.2559809814335867E-5 0.09056878857117594 4.521531533160912E-4 70-71 2.6375600610105323E-4 0.0011492225980117318 1.2559809814335867E-5 0.09392853769651079 4.521531533160912E-4 72-73 2.700359110082212E-4 0.0011617824078260677 1.2559809814335867E-5 0.09939833487065405 5.526316318307782E-4 74-75 2.763158159153891E-4 0.0011743422176404036 1.2559809814335867E-5 0.1034049142014272 5.526316318307782E-4 76-77 2.763158159153891E-4 0.0012245814568977473 1.2559809814335867E-5 0.10646322789121798 5.526316318307782E-4 78-79 2.763158159153891E-4 0.0012559809814335868 1.2559809814335867E-5 0.10827812040938951 5.526316318307782E-4 80-81 2.763158159153891E-4 0.0012559809814335868 1.2559809814335867E-5 0.10900030947371384 5.777512514594499E-4 82-83 2.763158159153891E-4 0.0012559809814335868 1.2559809814335867E-5 0.11062052493976315 6.279904907167934E-4 84-85 2.763158159153891E-4 0.0012622608863407546 1.2559809814335867E-5 0.1121779413567408 6.279904907167934E-4 86-87 2.763158159153891E-4 0.0012936604108765943 1.2559809814335867E-5 0.11306340794865148 6.342703956239613E-4 88 2.763158159153891E-4 0.0013062202206909302 1.2559809814335867E-5 0.1131764462369805 6.405503005311292E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8750 0.0 46.104046 1 GTATCAA 15445 0.0 35.85943 1 TCAACGC 18115 0.0 29.528683 4 ATCAACG 18175 0.0 29.432682 3 CAACGCA 18470 0.0 28.777864 5 TATCAAC 19215 0.0 28.145826 2 AACGCAG 19195 0.0 27.801065 6 GTACATG 21770 0.0 24.610909 1 TACATGG 21795 0.0 24.216345 2 ACGCAGA 22575 0.0 23.526926 7 ACATGGG 22240 0.0 23.183853 3 CGCAGAG 23035 0.0 23.058117 8 CATGGGG 16865 0.0 20.48045 4 GTGGTAT 4440 0.0 19.496655 1 GCAGAGT 27440 0.0 19.357155 9 GAGTACT 15670 0.0 18.302347 12-13 AGAGTAC 24120 0.0 17.387287 10-11 CAGAGTA 26370 0.0 17.337934 10-11 CTTATAC 5050 0.0 17.141613 1 ATGGGGG 10240 0.0 17.110828 5 >>END_MODULE