##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139350_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7979448 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.631157192828375 33.0 33.0 33.0 33.0 33.0 2 32.631032121520185 33.0 33.0 33.0 33.0 33.0 3 32.685546168105866 33.0 33.0 33.0 33.0 33.0 4 36.61156435883785 37.0 37.0 37.0 37.0 37.0 5 36.61819000512316 37.0 37.0 37.0 37.0 37.0 6 36.19071707717125 37.0 37.0 37.0 33.0 37.0 7 36.0628751512636 37.0 37.0 37.0 33.0 37.0 8 35.964319712341 37.0 37.0 37.0 33.0 37.0 9 35.96916252853581 37.0 37.0 37.0 33.0 37.0 10-11 35.89416980974123 37.0 37.0 37.0 33.0 37.0 12-13 35.80800764664423 37.0 37.0 37.0 33.0 37.0 14-15 37.54896240942982 40.0 37.0 40.0 33.0 40.0 16-17 37.48356089293395 40.0 37.0 40.0 33.0 40.0 18-19 37.50979591570745 40.0 37.0 40.0 33.0 40.0 20-21 37.431456146835544 40.0 37.0 40.0 33.0 40.0 22-23 37.30901130720055 40.0 37.0 40.0 33.0 40.0 24-25 37.29513061589117 40.0 37.0 40.0 33.0 40.0 26-27 37.14728039829551 40.0 37.0 40.0 33.0 40.0 28-29 36.985073081908254 40.0 37.0 40.0 33.0 40.0 30-31 36.799281098054536 40.0 37.0 40.0 33.0 40.0 32-33 36.59054109231826 40.0 37.0 40.0 33.0 40.0 34-35 36.50049842348008 40.0 37.0 40.0 33.0 40.0 36-37 36.309231496718354 40.0 37.0 40.0 30.0 40.0 38-39 36.34540004557745 40.0 37.0 40.0 33.0 40.0 40-41 36.38490499848367 40.0 37.0 40.0 33.0 40.0 42-43 36.3014863228607 40.0 37.0 40.0 33.0 40.0 44-45 36.17154547509796 38.5 37.0 40.0 27.0 40.0 46-47 36.005382162076046 37.0 37.0 40.0 27.0 40.0 48-49 35.81962252927746 37.0 37.0 40.0 27.0 40.0 50-51 35.81117674700211 37.0 37.0 40.0 27.0 40.0 52-53 35.70396702127846 37.0 37.0 40.0 27.0 40.0 54-55 35.52372927455272 37.0 35.0 40.0 27.0 40.0 56-57 35.29277616034428 37.0 33.0 40.0 27.0 40.0 58-59 35.17317704765607 37.0 33.0 40.0 27.0 40.0 60-61 35.05060279952569 37.0 33.0 40.0 27.0 40.0 62-63 34.89248644766712 37.0 33.0 40.0 27.0 40.0 64-65 34.724440046655836 37.0 33.0 40.0 27.0 40.0 66-67 34.47006944572625 37.0 33.0 38.5 27.0 40.0 68-69 34.27045144297426 37.0 33.0 37.0 27.0 40.0 70-71 34.04507665993812 37.0 33.0 37.0 27.0 40.0 72-73 33.75829002515239 37.0 33.0 37.0 27.0 40.0 74-75 33.41724291430269 37.0 33.0 37.0 24.5 40.0 76-77 31.32110634703676 33.0 30.0 35.0 24.5 37.0 78-79 33.405064044991086 37.0 33.0 37.0 27.0 37.0 80-81 33.75044230951372 37.0 33.0 37.0 27.0 37.0 82-83 33.699231885042096 37.0 33.0 37.0 27.0 37.0 84-85 33.60163781999398 37.0 33.0 37.0 27.0 37.0 86-87 33.47012558508584 37.0 33.0 37.0 27.0 37.0 88-89 33.31658944466443 37.0 33.0 37.0 27.0 37.0 90-91 33.238712848291655 35.0 33.0 37.0 27.0 37.0 92-93 33.28119515935212 33.0 33.0 37.0 27.0 37.0 94-95 33.33504683095437 33.0 33.0 37.0 27.0 37.0 96-97 33.44650174397654 33.0 33.0 37.0 27.0 37.0 98-99 33.58765345807382 33.0 33.0 37.0 27.0 37.0 100 33.5627968311527 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 0.0 12 0.0 13 2.0 14 1.0 15 18.0 16 28.0 17 115.0 18 342.0 19 985.0 20 2349.0 21 6081.0 22 14855.0 23 32857.0 24 62504.0 25 103327.0 26 150164.0 27 196366.0 28 236779.0 29 267839.0 30 289783.0 31 309648.0 32 332173.0 33 371955.0 34 440083.0 35 573207.0 36 918321.0 37 1946941.0 38 1696657.0 39 26067.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.00894535673964 19.854308199553177 13.089152669351648 24.04759377435554 2 15.021760378052967 21.40270754320087 40.994090917236875 22.58144116150929 3 18.204489746913147 26.938744664537285 30.173948178492015 24.682817410057552 4 12.31482340202077 17.894735522875898 39.124918224269784 30.665522850833547 5 13.071145540680392 38.39804166855694 35.53538679251667 12.995425998245993 6 29.88297309324819 38.015090519430736 19.036181329357788 13.06575505796329 7 26.6128717942484 32.727543650581296 23.46356834001153 17.196016215158767 8 24.9917694797647 36.279243411228876 21.410293219567723 17.318693889438705 9 26.490971116168826 16.057340815723194 20.843850457306125 36.60783761080185 10-11 24.439824095326042 26.507545552564466 29.168272617781042 19.88435773432845 12-13 25.468727343774578 24.163666097319833 29.02675027781193 21.34085628109366 14-15 22.562416932513955 25.374532926525887 26.530255833757877 25.532794307202284 16-17 22.08194727254316 28.370978794523126 27.22475289017486 22.322321042758848 18-19 22.13333553899969 27.584113587807074 28.908327994618173 21.374222878575058 20-21 22.99040305441195 26.89297577909553 28.600644427157018 21.515976739335503 22-23 22.67824227888717 26.89548025487745 28.430207122908964 21.996070343326412 24-25 22.40243982179713 26.99277102167663 28.629684971716042 21.975104184810196 26-27 22.391681063378822 27.158772120766123 28.512487838074165 21.93705897778089 28-29 22.310317644494937 27.23654627246389 28.498560991026494 21.95457509201468 30-31 22.52775922247214 27.17678419232267 28.3213374706496 21.974119114555585 32-33 22.381852977011356 27.304067890201583 28.29606520940927 22.018013923377787 34-35 22.47777991560357 27.291070239311566 28.335282992191395 21.895866852893473 36-37 22.491893130263957 27.3048585353153 28.189406818534763 22.01384151588598 38-39 22.31684064340784 27.44047514438193 28.29328981066209 21.94939440154814 40-41 22.503731019918686 27.28786969846162 28.22394002563869 21.984459255981008 42-43 22.413869439707305 27.36110271911192 28.03208429132345 22.19294354985733 44-45 22.489041061923825 27.456592267154463 27.814305020376352 22.240061650545364 46-47 22.546587558061994 27.43209927844917 27.554300924929098 22.467012238559743 48-49 22.50483451365033 27.580913719076726 27.53372283438341 22.380528932889533 50-51 22.46268463051979 27.6613357683382 27.468968680328025 22.40701092081398 52-53 22.573170574546115 27.584453673501642 27.374059656969372 22.46831609498287 54-55 22.497510911328938 27.532422444634236 27.411895631248413 22.558171012788414 56-57 22.54047996801896 27.6585911003352 27.31309545872423 22.487833472921608 58-59 22.484515171415502 27.692550333312273 27.363275022523737 22.45965947274849 60-61 22.52948388488374 27.707945795044125 27.380456581350515 22.382113738721614 62-63 22.522272062685424 27.884948968728263 27.278968586313113 22.313810382273196 64-65 22.522393271054668 27.774436204227378 27.25088116221724 22.452289362500714 66-67 22.54802547925598 27.698022410442768 27.246414699731105 22.50753741057015 68-69 22.44216679379538 27.73709163480894 27.38187210620118 22.438869465194504 70-71 22.52011749317625 27.494644326376093 27.411504992192377 22.573733188255282 72-73 22.55014521113243 27.52776235104885 27.30246561953888 22.61962681827984 74-75 22.401711282540244 27.641369494366774 27.30739590363356 22.649523319459423 76-77 22.520548405623586 27.579628359982923 27.306845668432654 22.59297756596084 78-79 22.38422677336881 27.5649194967942 27.357772683713154 22.693081046123844 80-81 22.382678450275495 27.624971087373474 27.369327477826573 22.623022984524457 82-83 22.455378808494032 27.552623606396075 27.445199501964133 22.546798083145756 84-85 22.48415979454855 27.549125507232493 27.401242021118794 22.565472677100164 86-87 22.327345205732744 27.55021577173144 27.523774604783817 22.598664417751994 88-89 22.381271513824373 27.47119745231239 27.480808002913548 22.666723030949687 90-91 22.408676714644425 27.440514035203222 27.525559482499762 22.62524976765259 92-93 22.406898304672005 27.430373536843987 27.576267747898616 22.586460410585392 94-95 22.319354520614972 27.426846745543454 27.611752666331075 22.6420460675105 96-97 22.36384457263164 27.490912564138114 27.694696887330945 22.4505459758993 98-99 23.385055630002615 29.41125007367098 28.004333179227576 19.199361117098825 100 22.53993119799855 30.230867115069987 21.6367268140839 25.592474872847564 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1184.0 1 1152.5 2 1750.5 3 2591.0 4 3782.0 5 6861.0 6 9500.0 7 10499.0 8 10387.5 9 9319.0 10 8066.0 11 7012.0 12 7532.0 13 10756.0 14 18055.0 15 28287.0 16 37462.5 17 43743.0 18 46309.0 19 44288.5 20 40167.5 21 36112.5 22 33646.5 23 34281.5 24 38208.5 25 45842.5 26 56261.5 27 68729.0 28 83155.0 29 99614.0 30 116841.0 31 135189.5 32 155317.0 33 174973.5 34 194483.0 35 213464.5 36 233161.0 37 252682.5 38 268730.5 39 281904.5 40 294402.5 41 306919.0 42 316763.5 43 325037.0 44 332756.0 45 340448.0 46 345907.0 47 348092.5 48 347963.0 49 343533.5 50 337829.0 51 330493.5 52 317894.5 53 300665.0 54 283600.0 55 265262.0 56 244568.5 57 222794.5 58 199685.5 59 175930.5 60 149840.5 61 124466.0 62 101684.0 63 81295.5 64 63443.5 65 48619.5 66 37305.5 67 29519.5 68 23737.0 69 18118.0 70 13600.0 71 10397.5 72 7823.5 73 5751.0 74 4244.5 75 3182.5 76 2385.5 77 1735.0 78 1212.0 79 861.5 80 623.5 81 457.0 82 366.0 83 278.0 84 200.0 85 145.5 86 106.5 87 77.5 88 55.0 89 36.0 90 23.0 91 16.5 92 13.0 93 8.0 94 4.0 95 2.5 96 2.0 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.2532195209493187E-5 2 4.6369122275124796E-4 3 0.0036343366107530247 4 0.0038599161245239017 5 2.5064390418986375E-5 6 1.2532195209493187E-5 7 1.2532195209493187E-5 8 1.2532195209493187E-5 9 1.2532195209493187E-5 10-11 1.5665244011866484E-4 12-13 0.001616653182024621 14-15 0.0030453234359068444 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.006362457855782613 26-27 0.019837756970678248 28-29 0.00897131224179087 30-31 0.0 32-33 0.0 34-35 1.2754661972440873E-4 36-37 0.013022854308595013 38-39 0.0374908324103806 40-41 0.042503806743148076 42-43 0.00763685945515793 44-45 3.3454282590948914E-4 46-47 6.6169394841844226E-6 48-49 0.03452222468259029 50-51 0.055824051834392596 52-53 0.05327720572817752 54-55 0.02910071740516233 56-57 0.0013380431532711188 58-59 0.005983679253615772 60-61 0.029494894131909526 62-63 0.03411330384793527 64-65 0.016618486879618796 66-67 0.04379101881147283 68-69 0.06009806835674856 70-71 0.07238586963606088 72-73 0.05012174919109396 74-75 0.022668558289447548 76-77 0.0053440901440519935 78-79 3.9684602046244924E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.002332504815228011 92-93 0.0025651071421855355 94-95 5.260326890978299E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2071.0 20-21 6459.0 22-23 7259.0 24-25 12667.0 26-27 17864.0 28-29 26157.0 30-31 27557.0 32-33 30304.0 34-35 34472.0 36-37 35404.0 38-39 39468.0 40-41 46673.0 42-43 54951.0 44-45 63891.0 46-47 64534.0 48-49 52249.0 50-51 63208.0 52-53 66670.0 54-55 61156.0 56-57 68726.0 58-59 78225.0 60-61 59221.0 62-63 53049.0 64-65 71494.0 66-67 78751.0 68-69 52980.0 70-71 58264.0 72-73 67082.0 74-75 61506.0 76-77 48319.0 78-79 70351.0 80-81 89490.0 82-83 88166.0 84-85 109394.0 86-87 122487.0 88-89 135617.0 90-91 146055.0 92-93 155875.0 94-95 178329.0 96-97 334906.0 98-99 506305.0 100-101 4631842.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.89175896871535 #Duplication Level Percentage of deduplicated Percentage of total 1 91.15203728419216 79.20360853205382 2 6.136399902213678 10.664051624775988 3 1.5198987288387695 3.962000220093457 4 0.5690207484472856 1.9777285488911822 5 0.24929746307116316 1.0830947536345863 6 0.1317690697704309 0.6869787750014472 7 0.07250174040984242 0.4409862626753079 8 0.043411034087793905 0.3017648888431419 9 0.029902761115077624 0.2338473160179359 >10 0.09385331639402986 1.2785466999715305 >50 0.0015337012581811318 0.08903108489925805 >100 3.300099423364388E-4 0.05523895247623003 >500 4.4240259212811084E-5 0.02312234066607176 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.2532195209493187E-5 0.0 1.2532195209493187E-5 0.0 3 0.0 1.2532195209493187E-5 0.0 1.2532195209493187E-5 0.0 4 0.0 2.5064390418986375E-5 0.0 2.5064390418986375E-5 0.0 5 0.0 2.5064390418986375E-5 0.0 2.5064390418986375E-5 0.0 6 8.772536646645232E-5 2.5064390418986375E-5 0.0 2.5064390418986375E-5 1.2532195209493187E-5 7 8.772536646645232E-5 2.5064390418986375E-5 0.0 7.519317125695913E-5 1.2532195209493187E-5 8 8.772536646645232E-5 3.7596585628479566E-5 0.0 7.519317125695913E-5 1.2532195209493187E-5 9 8.772536646645232E-5 1.3785414730442506E-4 0.0 8.772536646645232E-5 1.2532195209493187E-5 10-11 8.772536646645232E-5 1.3785414730442506E-4 0.0 1.1278975688543869E-4 1.2532195209493187E-5 12-13 8.772536646645232E-5 1.3785414730442506E-4 0.0 1.3785414730442506E-4 1.2532195209493187E-5 14-15 8.772536646645232E-5 1.8798292814239782E-4 0.0 1.3785414730442506E-4 1.2532195209493187E-5 16-17 1.2532195209493188E-4 1.8798292814239782E-4 0.0 1.4412024490917166E-4 1.2532195209493187E-5 18-19 1.2532195209493188E-4 2.3184561137562396E-4 0.0 1.5038634251391826E-4 1.879829281423978E-5 20-21 1.2532195209493188E-4 2.757082946088501E-4 0.0 1.5038634251391826E-4 3.7596585628479566E-5 22-23 1.3158804969967848E-4 3.195709778420763E-4 0.0 1.6918463532815804E-4 4.386268323322616E-5 24-25 1.3785414730442506E-4 3.7596585628479564E-4 0.0 2.4437780658511716E-4 5.012878083797275E-5 26-27 1.3785414730442506E-4 4.135624419132752E-4 0.0 3.8849805149428885E-4 5.012878083797275E-5 28-29 1.3785414730442506E-4 4.135624419132752E-4 0.0 0.0012845500089730517 5.012878083797275E-5 30-31 1.3785414730442506E-4 4.6369122275124796E-4 0.0 0.0032207741688397495 5.012878083797275E-5 32-33 1.3785414730442506E-4 4.6995732035599457E-4 0.0 0.007801291517909509 5.012878083797275E-5 34-35 1.3785414730442506E-4 5.702148820319401E-4 0.0 0.013772882535233014 5.012878083797275E-5 36-37 1.3785414730442506E-4 6.64206346103139E-4 0.0 0.021135547220810263 5.012878083797275E-5 38-39 1.3785414730442506E-4 7.018029317316186E-4 0.0 0.03357375096623225 5.012878083797275E-5 40-41 1.3785414730442506E-4 7.519317125695913E-4 0.0 0.04691427276673775 5.012878083797275E-5 42-43 1.3785414730442506E-4 7.581978101743379E-4 0.0 0.05915196138880785 5.012878083797275E-5 44-45 1.5665244011866484E-4 7.957943958028174E-4 0.0 0.07380836368631014 5.012878083797275E-5 46-47 1.7545073293290464E-4 8.271248838265504E-4 0.0 0.08704236182753494 5.012878083797275E-5 48-49 1.7545073293290464E-4 8.33390981431297E-4 0.0 0.09709318238554848 5.012878083797275E-5 50-51 2.00515123351891E-4 9.524468359214822E-4 0.0 0.10582812244656523 5.012878083797275E-5 52-53 2.130473185613842E-4 9.649790311309754E-4 0.0 0.1166371408147531 5.6394878442719345E-5 54-55 2.130473185613842E-4 9.649790311309754E-4 0.0 0.12616787527157267 6.266097604746594E-5 56-57 2.2557951377087738E-4 9.775112263404686E-4 0.0 0.1331232436128414 7.519317125695913E-5 58-59 2.2557951377087738E-4 9.775112263404686E-4 0.0 0.13904470584932693 8.772536646645232E-5 60-61 2.694421970041035E-4 0.001002575616759455 0.0 0.14410771271396217 8.772536646645232E-5 62-63 2.882404898183433E-4 0.0010151078119689481 0.0 0.1491707195785974 8.772536646645232E-5 64-65 2.882404898183433E-4 0.0010527043975974279 0.0 0.1535381896091058 8.772536646645232E-5 66-67 2.882404898183433E-4 0.0010527043975974279 0.0 0.15855733379050782 8.772536646645232E-5 68-69 2.882404898183433E-4 0.001077768788016414 0.0 0.16380205748568072 8.772536646645232E-5 70-71 2.945065874230899E-4 0.0011153653736448938 0.0 0.1675805143413429 8.772536646645232E-5 72-73 3.258370754468229E-4 0.0011153653736448938 0.0 0.17333279194250029 1.1278975688543869E-4 74-75 3.258370754468229E-4 0.0011466958616686267 0.0 0.1784459275879735 1.1278975688543869E-4 76-77 3.258370754468229E-4 0.0011842924472971062 0.0 0.18251889103105878 1.1278975688543869E-4 78-79 3.321031730515695E-4 0.0011905585449018528 0.0 0.18470575909511536 1.1278975688543869E-4 80-81 3.383692706563161E-4 0.0011905585449018528 0.0 0.18578352788313174 1.1278975688543869E-4 82-83 3.383692706563161E-4 0.0011905585449018528 0.0 0.18768842155497473 1.1278975688543869E-4 84-85 3.509014658658093E-4 0.001203090740111346 0.0 0.18925494595616138 1.1278975688543869E-4 86-87 3.509014658658093E-4 0.001234421228135079 0.0 0.1901321996208259 1.1278975688543869E-4 88 3.6343366107530244E-4 0.001340944887415771 0.0 0.1902261910848971 1.1278975688543869E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9395 0.0 47.38243 1 GTATCAA 17150 0.0 38.05355 1 TCAACGC 20900 0.0 30.682264 4 ATCAACG 20985 0.0 30.438679 3 CAACGCA 21375 0.0 29.8616 5 TATCAAC 21940 0.0 29.420193 2 AACGCAG 22075 0.0 29.011074 6 GTACATG 25830 0.0 25.233389 1 ACGCAGA 25430 0.0 24.952425 7 CGCAGAG 25695 0.0 24.72839 8 TACATGG 26075 0.0 24.513123 2 ACATGGG 26565 0.0 23.523321 3 GCAGAGT 30575 0.0 20.713528 9 CATGGGG 18825 0.0 20.501005 4 GAGTACT 17060 0.0 19.151827 12-13 AGAGTAC 27435 0.0 18.415342 10-11 GTGGTAT 4425 0.0 18.032196 1 CAGAGTA 29610 0.0 17.942019 10-11 ATGGGGG 11440 0.0 17.142197 5 AGTACTT 19055 0.0 16.68386 12-13 >>END_MODULE