##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139349_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7690822 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.61370735143786 33.0 33.0 33.0 33.0 33.0 2 32.615925189791156 33.0 33.0 33.0 33.0 33.0 3 32.667168997020084 33.0 33.0 33.0 33.0 33.0 4 36.5802040406084 37.0 37.0 37.0 37.0 37.0 5 36.60397640200228 37.0 37.0 37.0 37.0 37.0 6 36.202701219713575 37.0 37.0 37.0 33.0 37.0 7 36.06811599592345 37.0 37.0 37.0 33.0 37.0 8 35.984311689959796 37.0 37.0 37.0 33.0 37.0 9 35.98201596656378 37.0 37.0 37.0 33.0 37.0 10-11 35.91941349052156 37.0 37.0 37.0 33.0 37.0 12-13 35.83279082521998 37.0 37.0 37.0 33.0 37.0 14-15 37.570841842393435 40.0 37.0 40.0 33.0 40.0 16-17 37.5104436170802 40.0 37.0 40.0 33.0 40.0 18-19 37.533425295761624 40.0 37.0 40.0 33.0 40.0 20-21 37.447082086778764 40.0 37.0 40.0 33.0 40.0 22-23 37.336701001869926 40.0 37.0 40.0 33.0 40.0 24-25 37.32562498749495 40.0 37.0 40.0 33.0 40.0 26-27 37.17242630229482 40.0 37.0 40.0 33.0 40.0 28-29 37.01927841184096 40.0 37.0 40.0 33.0 40.0 30-31 36.845348788989384 40.0 37.0 40.0 33.0 40.0 32-33 36.636319148630285 40.0 37.0 40.0 33.0 40.0 34-35 36.54031546118006 40.0 37.0 40.0 33.0 40.0 36-37 36.375538182323496 40.0 37.0 40.0 33.0 40.0 38-39 36.4025321193932 40.0 37.0 40.0 33.0 40.0 40-41 36.4267235107106 40.0 37.0 40.0 33.0 40.0 42-43 36.33522145691531 40.0 37.0 40.0 33.0 40.0 44-45 36.21340824551349 37.0 37.0 40.0 30.0 40.0 46-47 36.04650020629752 37.0 37.0 40.0 27.0 40.0 48-49 35.8499375330958 37.0 37.0 40.0 27.0 40.0 50-51 35.825137379907 37.0 37.0 40.0 27.0 40.0 52-53 35.70869205997886 37.0 37.0 40.0 27.0 40.0 54-55 35.51148601719936 37.0 33.0 40.0 27.0 40.0 56-57 35.273036839325144 37.0 33.0 40.0 27.0 40.0 58-59 35.14120565841522 37.0 33.0 40.0 27.0 40.0 60-61 35.005949726209764 37.0 33.0 40.0 27.0 40.0 62-63 34.83095914091983 37.0 33.0 40.0 27.0 40.0 64-65 34.634187156203836 37.0 33.0 40.0 27.0 40.0 66-67 34.364914188696304 37.0 33.0 37.0 27.0 40.0 68-69 34.14358991175089 37.0 33.0 37.0 27.0 40.0 70-71 33.91842876970016 37.0 33.0 37.0 27.0 40.0 72-73 33.63172252368927 37.0 33.0 37.0 27.0 40.0 74-75 33.29245389770257 37.0 33.0 37.0 24.5 38.5 76-77 31.13475259883984 33.0 30.0 35.0 22.0 37.0 78-79 33.25037760053847 35.0 33.0 37.0 27.0 37.0 80-81 33.624011168109604 37.0 33.0 37.0 27.0 37.0 82-83 33.586060872469204 37.0 33.0 37.0 27.0 37.0 84-85 33.497590918394515 37.0 33.0 37.0 27.0 37.0 86-87 33.37028178600758 37.0 33.0 37.0 27.0 37.0 88-89 33.21193250339492 35.0 33.0 37.0 27.0 37.0 90-91 33.13230060009023 33.0 33.0 37.0 27.0 37.0 92-93 33.1825761276169 33.0 33.0 37.0 27.0 37.0 94-95 33.23807199123921 33.0 33.0 37.0 27.0 37.0 96-97 33.34182541953547 33.0 33.0 37.0 27.0 37.0 98-99 33.47543667815422 33.0 33.0 37.0 27.0 37.0 100 33.451779154645706 33.0 33.0 37.0 27.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 1.0 15 10.0 16 39.0 17 89.0 18 295.0 19 873.0 20 2182.0 21 5683.0 22 14257.0 23 31534.0 24 59933.0 25 98496.0 26 142714.0 27 186924.0 28 225496.0 29 253846.0 30 274417.0 31 292832.0 32 316460.0 33 357833.0 34 430307.0 35 577544.0 36 945922.0 37 1944201.0 38 1498033.0 39 30900.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.738867410904504 19.32339863325385 12.71087963170642 24.226854324135225 2 15.53044704345298 21.16721078026254 40.03778022456973 23.26456195171475 3 18.698011541208672 26.232499740915095 29.883379933942127 25.18610878393411 4 12.812176507555249 17.206648062715452 37.996648064015766 31.98452736571354 5 13.442661063103667 38.250987768406 35.051693440791304 13.254657727699032 6 31.15547336812632 37.024039823051424 18.343617886358572 13.476868922463684 7 27.601015860203237 32.30762589486533 22.616581166486498 17.47477707844493 8 25.937773621597277 35.667110745769435 20.84943586004201 17.545679772591278 9 26.98009393534267 15.775088800650957 20.17411142788118 37.07070583612519 10-11 25.19634462619951 26.095976316681174 28.47701816738774 20.23066088973157 12-13 26.058923826138784 23.643483325139464 28.383182876897305 21.914409971824444 14-15 23.094123945828514 24.889515774335543 25.84995730164607 26.16640297818987 16-17 22.795976814962042 27.876344037087325 26.467742979879134 22.859936168071503 18-19 22.845457871733345 27.120235002188327 28.06909976592879 21.965207360149538 20-21 23.79746800862539 26.448503409360548 27.69743798418956 22.056590597824503 22-23 23.39943550785643 26.37447275367532 27.63410301190714 22.59198872656111 24-25 23.153307378389236 26.545511731830686 27.759092306460037 22.542088583320044 26-27 23.092111818917807 26.726289335478825 27.730150253618035 22.451448591985333 28-29 23.015614530616464 26.70024834380183 27.73499127179718 22.54914585378452 30-31 23.403279279298207 26.60534915887831 27.538671688058713 22.452699873764768 32-33 23.130008166917428 26.874152711143147 27.543978306769713 22.45186081516971 34-35 23.16405325241238 26.855555870853763 27.57515017069429 22.405240706039564 36-37 23.25864396510259 26.708417153198354 27.53014857707751 22.50279030462154 38-39 22.9911168291778 26.928572953841147 27.588504728526775 22.49180548845428 40-41 23.20111156923675 26.766245302815463 27.51951782835038 22.51312529959741 42-43 23.135950323372853 26.743144612782288 27.39008578476472 22.730819279080137 44-45 23.077405828075655 26.92504002411522 27.209389847060628 22.788164300748498 46-47 23.276587255248096 26.769001405946653 26.93144690534487 23.022964433460384 48-49 23.047449927235828 26.92317785307774 27.061308903801486 22.968063315884947 50-51 23.000356229448933 27.07919382162079 26.996748582796926 22.923701366133347 52-53 23.23666620649 27.017223525823347 26.764091444016923 22.98201882366973 54-55 23.166954169767564 26.88590023156098 26.84225272594773 23.10489287272372 56-57 23.10399273470675 27.111589299915707 26.78164327909322 23.00277468628432 58-59 23.011978291439796 27.184408843596415 26.865044506784567 22.93856835817922 60-61 23.117085076965246 27.1822929942651 26.825456192148287 22.875165736621366 62-63 23.037413446748484 27.328975584022686 26.738697527945142 22.894913441283688 64-65 23.012155603560355 27.272905918547398 26.76240574952637 22.952532728365878 66-67 23.10637263492483 27.28492087848146 26.608763957956604 22.999942528637103 68-69 22.964168975411127 27.248013088341093 26.72847859281915 23.05933934342863 70-71 22.990969963550956 26.951953866330296 26.832823775568805 23.224252394549943 72-73 23.08853581637953 27.023392418718284 26.670262481913248 23.217809282988938 74-75 22.878679164666863 27.217872578821623 26.662107711778237 23.241340544733276 76-77 23.02928222910324 27.057411509087103 26.676020509653142 23.23728575215651 78-79 22.990936495808324 27.134032231184392 26.603570432778646 23.27146084022864 80-81 23.049647303043212 27.106992835431676 26.573782702538974 23.269577158986138 82-83 23.075037429719977 26.98022598247042 26.78150478052408 23.163231807285523 84-85 23.140138393932595 27.087970693049567 26.655103380101515 23.116787532916323 86-87 22.913537540627516 27.104460839772106 26.760291528068418 23.22171009153196 88-89 22.988946944643146 27.05004198675085 26.755426312388337 23.205584756217668 90-91 23.039351751347873 27.04864650345436 26.84982695253506 23.062174792662706 92-93 23.09120579420181 26.998467153893614 26.83451863517936 23.075808416725216 94-95 22.920316108573992 27.04830199544447 26.918725134617468 23.112656761364075 96-97 22.95693444262347 27.08240361836686 27.075326827842183 22.885335111167485 98-99 24.117121435642147 29.02779967350796 27.225642228468377 19.62943666238151 100 23.225679368382632 29.767349926760446 20.995135229141315 26.01183547571561 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 865.0 1 864.5 2 1388.0 3 2119.5 4 3150.0 5 5791.0 6 8093.0 7 9055.5 8 9044.0 9 8092.0 10 7002.5 11 6126.5 12 6458.5 13 8974.0 14 14900.5 15 23412.5 16 31238.5 17 36396.0 18 38080.5 19 36055.5 20 32520.0 21 28997.0 22 26624.5 23 26791.5 24 29730.0 25 35921.5 26 45122.0 27 55991.0 28 67169.0 29 80204.0 30 93938.5 31 108243.0 32 125632.0 33 143415.5 34 161200.5 35 179128.0 36 199412.5 37 219308.0 38 233395.0 39 245334.5 40 260403.0 41 274268.5 42 283706.5 43 294674.0 44 305347.0 45 314996.0 46 323088.5 47 329165.0 48 336226.5 49 338458.5 50 336617.5 51 335222.5 52 329057.5 53 318697.5 54 306748.5 55 290384.0 56 272073.5 57 251958.0 58 229900.5 59 206359.0 60 178035.0 61 148682.5 62 121629.0 63 97283.5 64 76171.5 65 58934.5 66 45930.0 67 36439.0 68 28594.0 69 21268.5 70 15735.5 71 11665.5 72 8445.5 73 6069.5 74 4271.0 75 3138.0 76 2356.5 77 1730.5 78 1285.0 79 934.0 80 652.0 81 452.5 82 341.0 83 241.5 84 173.0 85 133.0 86 103.0 87 82.5 88 57.5 89 36.5 90 23.5 91 16.0 92 14.0 93 7.5 94 2.5 95 2.0 96 1.5 97 2.0 98 1.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 1.3002511305033456E-5 2 3.380652939308698E-4 3 0.0038097358123748023 4 0.004433856355016408 5 1.3002511305033456E-5 6 0.0 7 0.0 8 0.0 9 0.0 10-11 1.0402009044026764E-4 12-13 0.0014692837774687804 14-15 0.0031791140140806796 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.006894831724072224 26-27 0.02151819482192323 28-29 0.009740334338285346 30-31 0.0 32-33 0.0 34-35 1.5213666688142192E-4 36-37 0.011963660497487665 38-39 0.033687575421811805 40-41 0.038132793263966056 42-43 0.006658838712008056 44-45 3.2566025751449174E-4 46-47 2.051079117163587E-5 48-49 0.03366219788194614 50-51 0.05887458680366507 52-53 0.05381658030842183 54-55 0.028080351275002587 56-57 0.0012408363350346026 58-59 0.006217883362382321 60-61 0.030540999306982005 62-63 0.03328773569100823 64-65 0.014445475504874152 66-67 0.03910399105853863 68-69 0.05573657872916225 70-71 0.07321548414797416 72-73 0.05218972480001135 74-75 0.022940194196847747 76-77 0.005128331978119747 78-79 3.5797272884202186E-4 80-81 0.0 82-83 0.0 84-85 0.0 86-87 0.0 88-89 0.0 90-91 0.0022017869667652194 92-93 0.002765647968196318 94-95 6.06454844118713E-4 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 2119.0 20-21 6141.0 22-23 7061.0 24-25 12784.0 26-27 17165.0 28-29 24458.0 30-31 25952.0 32-33 27873.0 34-35 32216.0 36-37 32006.0 38-39 32835.0 40-41 40303.0 42-43 46686.0 44-45 54634.0 46-47 55227.0 48-49 44896.0 50-51 52117.0 52-53 48693.0 54-55 59067.0 56-57 62920.0 58-59 63283.0 60-61 63406.0 62-63 66613.0 64-65 78512.0 66-67 84795.0 68-69 75226.0 70-71 73882.0 72-73 65618.0 74-75 72603.0 76-77 56293.0 78-79 74548.0 80-81 85599.0 82-83 99938.0 84-85 107771.0 86-87 118161.0 88-89 129958.0 90-91 139345.0 92-93 149648.0 94-95 170905.0 96-97 324189.0 98-99 483585.0 100-101 4421791.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 86.06477170158293 #Duplication Level Percentage of deduplicated Percentage of total 1 90.68331439113767 78.04638750216132 2 6.409091646189682 11.031940186876746 3 1.626544328320857 4.199644988383173 4 0.5925253651061617 2.0398224110103547 5 0.2778962173752143 1.195853725256564 6 0.13852246951334282 0.7153142828523198 7 0.07775200343920048 0.4684195897734836 8 0.05015469231115485 0.34532417148181427 9 0.03780915497136502 0.2928632661756269 >10 0.10348311187572765 1.3688342735940942 >50 0.0024058111423949655 0.1465162215876242 >100 3.813812790995092E-4 0.04810358963628822 >500 7.165647372364583E-5 0.04236794765749871 >1k 4.7770864347846936E-5 0.05860784355306779 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.3002511305033454E-5 1.3002511305033454E-5 2 0.0 5.2010045220133815E-5 0.0 2.6005022610066908E-5 1.3002511305033454E-5 3 0.0 5.2010045220133815E-5 0.0 2.6005022610066908E-5 1.3002511305033454E-5 4 0.0 1.8203515827046836E-4 0.0 2.6005022610066908E-5 3.9007533915100365E-5 5 0.0 1.8203515827046836E-4 0.0 2.6005022610066908E-5 3.9007533915100365E-5 6 3.9007533915100365E-5 1.8203515827046836E-4 0.0 2.6005022610066908E-5 5.2010045220133815E-5 7 3.9007533915100365E-5 1.8203515827046836E-4 0.0 2.6005022610066908E-5 5.2010045220133815E-5 8 3.9007533915100365E-5 1.9503766957550182E-4 0.0 2.6005022610066908E-5 6.501255652516727E-5 9 3.9007533915100365E-5 3.120602713208029E-4 0.0 2.6005022610066908E-5 7.801506783020073E-5 10-11 3.9007533915100365E-5 3.120602713208029E-4 0.0 2.6005022610066908E-5 7.801506783020073E-5 12-13 3.9007533915100365E-5 3.120602713208029E-4 0.0 2.6005022610066908E-5 7.801506783020073E-5 14-15 3.9007533915100365E-5 4.940954295912713E-4 0.0 3.250627826258363E-5 1.4952888000788471E-4 16-17 6.501255652516727E-5 5.070979408963047E-4 0.0 3.9007533915100365E-5 1.690326469654349E-4 18-19 6.501255652516727E-5 5.201004522013381E-4 0.0 3.9007533915100365E-5 1.690326469654349E-4 20-21 7.1513812177684E-5 5.461054748114051E-4 0.0 7.1513812177684E-5 1.690326469654349E-4 22-23 7.801506783020073E-5 6.241205426416058E-4 0.0 2.210426921855687E-4 1.7553390261795164E-4 24-25 7.801506783020073E-5 7.476444000394237E-4 0.0 6.176192869890891E-4 1.9503766957550182E-4 26-27 7.801506783020073E-5 8.32160723522141E-4 0.0 0.0012677448522407618 1.9503766957550182E-4 28-29 7.801506783020073E-5 8.32160723522141E-4 0.0 0.005396042191588884 1.9503766957550182E-4 30-31 7.801506783020073E-5 0.001001193370487576 0.0 0.00935530688397157 2.0153892522801854E-4 32-33 7.801506783020073E-5 0.0010076946261400929 0.0 0.014543308894679918 2.0804018088053526E-4 34-35 7.801506783020073E-5 0.001215734807020628 0.0 0.02139563235243255 2.0804018088053526E-4 36-37 7.801506783020073E-5 0.0014172737322486464 0.0 0.032265731803440514 2.2104269218556873E-4 38-39 7.801506783020073E-5 0.0014432787548587134 0.0 0.054935610263766345 2.2104269218556873E-4 40-41 7.801506783020073E-5 0.0016123114018241483 0.0 0.08092763036252823 2.2104269218556873E-4 42-43 7.801506783020073E-5 0.001618812657476665 0.0 0.10459870219334162 2.2754394783808544E-4 44-45 7.801506783020073E-5 0.0017943465600946166 0.0 0.13324323459833032 2.3404520349060216E-4 46-47 7.801506783020073E-5 0.001950376695755018 0.0 0.16641914219312318 2.3404520349060216E-4 48-49 7.801506783020073E-5 0.001950376695755018 0.0 0.19858735516177595 2.470477147956356E-4 50-51 8.451632348271745E-5 0.0021779206435931036 0.0 0.2299754174521267 2.470477147956356E-4 52-53 1.0402009044026763E-4 0.0021844218992456204 0.0 0.2855936595594073 2.86055248710736E-4 54-55 1.0402009044026763E-4 0.0022039256662031706 0.0 0.35492304983784567 3.4456654958338654E-4 56-57 1.0402009044026763E-4 0.0022234294331607207 0.0 0.4316898765827632 3.510678052359033E-4 58-59 1.0402009044026763E-4 0.002236431944465754 0.0 0.492632647069455 3.705715721934534E-4 60-61 1.0402009044026763E-4 0.0022559357114233045 0.0 0.5380439178022843 3.9007533915100365E-4 62-63 1.3002511305033453E-4 0.002301444500990921 0.0 0.5784752267052858 4.030778504560371E-4 64-65 1.3002511305033453E-4 0.002450973380998806 0.0 0.5917637932590301 4.030778504560371E-4 66-67 1.3002511305033453E-4 0.0024704771479563564 0.0 0.6001699168177341 4.030778504560371E-4 68-69 1.3002511305033453E-4 0.0025354897044815236 0.0 0.6080429374129319 4.030778504560371E-4 70-71 1.43027624355368E-4 0.0025549934714390737 0.0 0.6136275160184438 4.030778504560371E-4 72-73 1.690326469654349E-4 0.0025614947270915906 0.0 0.619719192564852 4.810929182862378E-4 74-75 1.690326469654349E-4 0.002646011050574308 0.0 0.6251997510799236 4.810929182862378E-4 76-77 1.8203515827046836E-4 0.002737028629709542 0.0 0.6296661137132026 4.875941739387545E-4 78-79 1.8203515827046836E-4 0.0027695349079721256 0.0 0.632201603417684 4.940954295912713E-4 80-81 1.8203515827046836E-4 0.0027695349079721256 0.0 0.6331637892542565 5.00596685243788E-4 82-83 1.8203515827046836E-4 0.0027695349079721256 0.0 0.6351856797621893 5.070979408963047E-4 84-85 1.8853641392298508E-4 0.0027695349079721256 0.0 0.6369085125101062 5.070979408963047E-4 86-87 1.9503766957550182E-4 0.0027695349079721256 0.0 0.6378186883014585 5.201004522013381E-4 88 2.0804018088053526E-4 0.002886557509717427 0.0 0.6378771996023312 5.331029635063716E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8375 0.0 47.72681 1 GTATCAA 15215 0.0 37.154984 1 TCAACGC 18235 0.0 30.101631 4 ATCAACG 18755 0.0 29.380037 3 CAACGCA 18885 0.0 28.998236 5 TATCAAC 19325 0.0 28.9267 2 AACGCAG 19500 0.0 28.213728 6 GTACATG 26595 0.0 27.451529 1 TACATGG 26095 0.0 27.397676 2 ACATGGG 26430 0.0 26.446112 3 CATGGGG 20790 0.0 23.996552 4 ACGCAGA 22760 0.0 23.950972 7 CGCAGAG 23525 0.0 23.19074 8 GCAGAGT 27545 0.0 19.791084 9 ATGGGGG 12155 0.0 19.501513 5 GTGGTAT 4085 0.0 19.446278 1 GAGTACT 14465 0.0 18.044292 12-13 AGAGTAC 24070 0.0 17.872452 10-11 CAGAGTA 26420 0.0 17.467949 10-11 GTATAAT 5020 0.0 17.415113 1 >>END_MODULE