##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139337_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9554458 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.967546563080816 32.0 25.0 33.0 18.0 33.0 2 30.706899438984397 32.0 30.0 33.0 27.0 33.0 3 31.600385495440975 33.0 31.0 33.0 29.0 33.0 4 31.823600145607422 33.0 31.0 33.0 29.0 34.0 5 32.48374664475996 33.0 33.0 33.0 31.0 34.0 6 36.32484333491235 38.0 37.0 38.0 34.0 38.0 7 36.94943124978936 38.0 38.0 38.0 35.0 38.0 8 36.860842446531244 38.0 38.0 38.0 35.0 38.0 9 37.12066241748093 38.0 38.0 38.0 36.0 38.0 10-11 37.226272437431824 38.0 38.0 38.0 36.0 38.0 12-13 37.25120749915903 38.0 38.0 38.0 36.0 38.0 14-15 37.24983185859418 38.0 38.0 38.0 36.0 38.0 16-17 37.25199645024344 38.0 38.0 38.0 36.0 38.0 18-19 37.264486431360105 38.0 38.0 38.0 36.0 38.0 20-21 37.237940580555346 38.0 38.0 38.0 36.5 38.0 22-23 37.25646544289394 38.0 38.0 38.0 36.5 38.0 24-25 37.279061763327064 38.0 38.0 38.0 37.0 38.0 26-27 37.25520994725531 38.0 38.0 38.0 37.0 38.0 28-29 37.23384432665559 38.0 38.0 38.0 36.5 38.0 30-31 37.23267226432543 38.0 38.0 38.0 36.5 38.0 32-33 37.173072848130886 38.0 38.0 38.0 36.5 38.0 34-35 37.18128232728141 38.0 38.0 38.0 36.0 38.0 36-37 37.178613122189724 38.0 38.0 38.0 36.0 38.0 38-39 37.16688738487548 38.0 38.0 38.0 36.0 38.0 40-41 37.1603181416554 38.0 38.0 38.0 36.0 38.0 42-43 37.130043722221565 38.0 38.0 38.0 36.0 38.0 44-45 37.10354070208966 38.0 38.0 38.0 36.0 38.0 46-47 37.07517618356047 38.0 38.0 38.0 36.0 38.0 48-49 37.028128226478074 38.0 38.0 38.0 36.0 38.0 50-51 36.997797310481666 38.0 38.0 38.0 36.0 38.0 52-53 36.96140734609304 38.0 38.0 38.0 36.0 38.0 54-55 36.933299113796735 38.0 38.0 38.0 36.0 38.0 56-57 36.899535234041565 38.0 38.0 38.0 36.0 38.0 58-59 36.903843424940234 38.0 38.0 38.0 36.0 38.0 60-61 36.92853414047167 38.0 38.0 38.0 36.0 38.0 62-63 36.937941420136866 38.0 38.0 38.0 36.0 38.0 64-65 36.934723391237185 38.0 38.0 38.0 36.0 38.0 66-67 36.93805771445649 38.0 38.0 38.0 36.0 38.0 68-69 36.938816169752926 38.0 38.0 38.0 36.0 38.0 70-71 36.92292392278103 38.0 38.0 38.0 35.5 38.0 72-73 36.89799076040491 38.0 38.0 38.0 35.0 38.0 74-75 36.890452484836956 38.0 38.0 38.0 35.0 38.0 76-77 36.88756574475538 38.0 38.0 38.0 35.0 38.0 78-79 36.85779168878319 38.0 38.0 38.0 35.0 38.0 80-81 36.828410558148676 38.0 38.0 38.0 35.0 38.0 82-83 36.82291823775168 38.0 38.0 38.0 35.0 38.0 84-85 36.77411980818957 38.0 38.0 38.0 35.0 38.0 86-87 36.75482034525879 38.0 38.0 38.0 35.0 38.0 88-89 36.75630074893075 38.0 38.0 38.0 35.0 38.0 90-91 36.73163048710282 38.0 38.0 38.0 35.0 38.0 92-93 36.73787959344983 38.0 38.0 38.0 35.0 38.0 94-95 36.68144005834694 38.0 38.0 38.0 34.5 38.0 96-97 36.64928299449905 38.0 38.0 38.0 34.0 38.0 98-99 36.73834141648308 38.0 38.0 38.0 34.0 38.0 100 35.080057049742614 38.0 35.0 38.0 29.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 4.0 19 31.0 20 125.0 21 374.0 22 1071.0 23 2684.0 24 6046.0 25 11525.0 26 19772.0 27 31840.0 28 47660.0 29 67216.0 30 92635.0 31 122577.0 32 160326.0 33 213849.0 34 310936.0 35 535896.0 36 1458758.0 37 6471130.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.24176651360025 18.765690319639273 13.633614800546509 23.35892836621397 2 14.382525312808307 20.484048257456834 42.853664974785055 22.279761454949806 3 17.438529741823135 27.096858869440844 30.725751267104844 24.738860121631177 4 11.97168902725827 18.50673266866629 39.454378259865706 30.06720004420973 5 13.129923501513893 37.71280746764556 36.07038430106375 13.086884729776802 6 29.351089534652246 38.55074381078715 19.10238437686497 12.99578227769564 7 25.97808269187012 33.1070061744999 23.68652413355106 17.228387000078914 8 24.307668734322764 36.74259701596888 21.391260498502373 17.55847375120598 9 25.806665328373413 16.571185932263244 21.192295784857706 36.429852954505634 10-11 23.95752328389533 26.680885509151853 29.45316730682159 19.90842390013123 12-13 24.885252517725235 24.39239358213726 29.397774316449976 21.32457958368753 14-15 22.162633401078324 25.665537490457336 26.862795356889947 25.309033751574393 16-17 21.648412709543546 28.806992505488015 27.48017731618057 22.06441746878787 18-19 21.69549020991039 27.92474989162127 29.228062962859852 21.151696935608488 20-21 22.57685057271801 27.09881558698951 29.03563433337663 21.288699506915854 22-23 22.304028957431562 26.990980424091305 28.94057978083473 21.7644108376424 24-25 22.034467822209695 27.13538645191289 29.012177354843043 21.817968371034368 26-27 21.970957286845394 27.272342777255904 28.92534067750139 21.831359258397317 28-29 21.93132762253881 27.262336298481067 28.97000335325388 21.836332725726244 30-31 22.229056791374 27.12529391646248 28.846641037818465 21.799008254345058 32-33 22.026557832071994 27.318321502173603 28.8189306255583 21.836190040196108 34-35 22.169774858770722 27.313568855695692 28.795838902986194 21.720817382547395 36-37 22.130655032180975 27.209625640160073 28.803904892630396 21.855814435028563 38-39 21.94428000234717 27.349150122329714 28.864623024258705 21.84194685106441 40-41 22.181702712491752 27.1489998136476 28.791835193416237 21.87746228044441 42-43 22.087620446419695 27.25994183087303 28.61123583401063 22.041201888696644 44-45 22.130478092759496 27.34789522587711 28.518531619879354 22.00309506148404 46-47 22.22315349034151 27.301408131821127 28.328588401321653 22.146849976515718 48-49 22.110700647219637 27.409309974788087 28.302105957817663 22.177883420174606 50-51 22.105429840203136 27.5689342282603 28.18935968653909 22.136276244997475 52-53 22.323243643389663 27.452480978069683 28.073674471583693 22.15060090695696 54-55 22.248196125568438 27.343337699389924 28.13292271464033 22.275543460401313 56-57 22.253304910974006 27.43897252460797 28.123158696886268 22.184563867531754 58-59 22.203247814870554 27.449568607000135 28.15499712222961 22.1921864558997 60-61 22.264753307655212 27.46178311198939 28.13969513015479 22.133768450200602 62-63 22.184400500432357 27.567387241973577 28.102777203512712 22.145435054081354 64-65 22.239310974085978 27.49585340764461 28.050921432681076 22.21391418558834 66-67 22.263377114080352 27.55178625213444 27.910419599023516 22.274417034761687 68-69 22.202330849743074 27.518384229857134 27.975381943420068 22.30390297697972 70-71 22.253940043174108 27.29735403437316 28.032027560013635 22.4166783624391 72-73 22.336532693461308 27.3054907090871 27.920343642114954 22.437632955336642 74-75 22.177572296189922 27.483765780147664 27.92971630662842 22.408945617033996 76-77 22.409472086027783 27.37681942973528 27.80516781681545 22.408540667421484 78-79 22.334171296989496 27.465225188585112 27.702247250425955 22.498356263999433 80-81 22.359612847233173 27.465258182921332 27.673299746522133 22.501829223323362 82-83 22.401762592624795 27.416700026652258 27.74124975827278 22.440287622450168 84-85 22.477713277139866 27.404200770999797 27.69236956597964 22.425716385880694 86-87 22.367324174651205 27.43695966759723 27.77488698506176 22.420829172689803 88-89 22.408673331164085 27.51618539637021 27.649602006741446 22.42553926572426 90-91 22.476820932584953 27.494249662435678 27.635093376361958 22.393836028617407 92-93 22.563230306556356 27.479432947844494 27.62724306520999 22.330093680389158 94-95 22.452731067820622 27.530275377276336 27.62244766915785 22.394545885745192 96-97 22.532408474235506 27.618095149740498 27.752894106879882 22.09660226914412 98-99 23.562662688958 29.558602927804223 27.942281585768423 18.936452797469354 100 22.47629635408136 30.329757830742277 21.973754507709764 25.2201913074666 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1542.0 1 1533.0 2 2378.0 3 3499.0 4 4424.5 5 6276.5 6 7979.0 7 9785.0 8 12242.0 9 13733.5 10 13240.0 11 12506.0 12 13655.0 13 16368.0 14 21180.0 15 26791.5 16 31075.0 17 33868.0 18 34312.5 19 32469.5 20 30284.5 21 29004.5 22 30190.0 23 35086.0 24 43532.5 25 56214.0 26 73581.0 27 93149.0 28 113812.0 29 138009.0 30 161939.5 31 185424.5 32 210873.5 33 233307.5 34 253156.5 35 272531.5 36 292772.5 37 312115.5 38 326496.5 39 336408.0 40 347352.5 41 358530.5 42 365935.0 43 373827.0 44 381752.0 45 390233.0 46 393824.5 47 392319.0 48 390055.0 49 383128.0 50 373900.0 51 362885.0 52 348982.5 53 331933.5 54 313713.5 55 293287.0 56 271135.0 57 247740.0 58 221783.0 59 193936.0 60 162854.0 61 132008.5 62 104488.5 63 80551.0 64 60527.5 65 44518.5 66 32721.0 67 24829.0 68 18925.5 69 13855.0 70 10081.0 71 7314.0 72 5205.0 73 3633.5 74 2401.5 75 1539.0 76 940.0 77 525.5 78 324.0 79 199.5 80 127.0 81 88.5 82 64.0 83 43.5 84 28.5 85 20.5 86 16.5 87 14.0 88 9.5 89 5.0 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002135128962835987 3 0.0 4 0.0 5 0.0029515018015673937 6 1.2559582134329337E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 5.901569967833224E-5 44-45 1.620168024385473E-5 46-47 0.0 48-49 0.0 50-51 2.210023140047288E-5 52-53 0.0011123405564094314 54-55 0.002088094758523877 56-57 0.0024294112302155175 58-59 0.0016182937834635473 60-61 0.003965612588147613 62-63 0.0015108469294659959 64-65 0.0014877531185281288 66-67 2.2853286762632112E-4 68-69 2.4831308212050626E-4 70-71 2.0288543668046965E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 8.040090613058146E-5 80-81 3.247223826579763E-4 82-83 6.305241799717777E-6 84-85 0.0 86-87 0.0 88-89 0.0 90-91 5.896602678918322E-5 92-93 2.6484451872156107E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 54.0 20-21 334.0 22-23 771.0 24-25 855.0 26-27 2284.0 28-29 5934.0 30-31 15657.0 32-33 20496.0 34-35 27527.0 36-37 43670.0 38-39 52171.0 40-41 51500.0 42-43 58019.0 44-45 70092.0 46-47 70844.0 48-49 68516.0 50-51 61580.0 52-53 57469.0 54-55 61251.0 56-57 63179.0 58-59 67099.0 60-61 67983.0 62-63 66625.0 64-65 69514.0 66-67 74646.0 68-69 77264.0 70-71 79418.0 72-73 71232.0 74-75 70678.0 76-77 74087.0 78-79 77203.0 80-81 78055.0 82-83 73336.0 84-85 71869.0 86-87 73268.0 88-89 78213.0 90-91 80183.0 92-93 80724.0 94-95 96836.0 96-97 298859.0 98-99 660077.0 100-101 6435086.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.35782770237611 #Duplication Level Percentage of deduplicated Percentage of total 1 89.1233418074285 74.29128170643598 2 7.310213906070715 12.187271024995129 3 1.9217008249838523 4.80566418793554 4 0.7137546190287904 2.3798813821910807 5 0.35295674428042095 1.4710853738059477 6 0.19171713727479137 0.9588674457926908 7 0.10843118145070416 0.6327011418653012 8 0.07008246528849742 0.46735376531810574 9 0.045238710789064544 0.33939005934892186 >10 0.15746435588586427 2.0314888080370457 >50 0.004079609087926097 0.2265365523031157 >100 8.83411920075641E-4 0.11099353692188331 >500 9.015175452651542E-5 0.04798214270250946 >1k 4.50747562412355E-5 0.04950287234677436 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 5.2331592226372235E-5 0.0 0.0 0.0 3 0.0 5.2331592226372235E-5 0.0 0.0 0.0 4 0.0 7.326422911692112E-5 0.0 2.0932636890548894E-5 0.0 5 0.0 7.326422911692112E-5 0.0 2.0932636890548894E-5 0.0 6 0.0 7.326422911692112E-5 0.0 3.139895533582334E-5 0.0 7 0.0 7.326422911692112E-5 0.0 3.139895533582334E-5 0.0 8 0.0 8.373054756219558E-5 0.0 3.139895533582334E-5 0.0 9 0.0 1.8839373201494003E-4 0.0 3.139895533582334E-5 0.0 10-11 1.0466318445274447E-5 1.8839373201494003E-4 0.0 3.139895533582334E-5 0.0 12-13 1.0466318445274447E-5 1.8839373201494003E-4 0.0 3.139895533582334E-5 0.0 14-15 1.569947766791167E-5 2.5119164268658673E-4 0.0 3.139895533582334E-5 0.0 16-17 2.0932636890548894E-5 2.5119164268658673E-4 0.0 3.663211455846056E-5 0.0 18-19 2.0932636890548894E-5 2.564248019092239E-4 0.0 4.186527378109779E-5 0.0 20-21 2.0932636890548894E-5 2.6165796113186116E-4 0.0 5.2331592226372235E-5 0.0 22-23 2.0932636890548894E-5 3.0352323491295897E-4 0.0 5.7564751449009456E-5 5.2331592226372235E-6 24-25 2.6165796113186118E-5 3.506216679166939E-4 0.0 8.373054756219558E-5 1.0466318445274447E-5 26-27 3.139895533582334E-5 3.7678746402988007E-4 0.0 1.3606213978856782E-4 1.0466318445274447E-5 28-29 3.139895533582334E-5 3.7678746402988007E-4 0.0 3.9248694169779174E-4 1.569947766791167E-5 30-31 3.663211455846056E-5 4.291190562562523E-4 0.0 0.001266424531878208 2.0932636890548894E-5 32-33 4.186527378109779E-5 4.291190562562523E-4 0.0 0.003275957673370902 2.0932636890548894E-5 34-35 4.7098433003735015E-5 5.023832853731735E-4 0.0 0.006133262608930826 2.0932636890548894E-5 36-37 5.2331592226372235E-5 5.756475144900946E-4 0.0 0.010403520534602799 2.0932636890548894E-5 38-39 5.2331592226372235E-5 5.913469921580062E-4 0.0 0.023439320158192126 2.0932636890548894E-5 40-41 6.279791067164668E-5 6.593780620522901E-4 0.0 0.03807646650390843 2.0932636890548894E-5 42-43 6.279791067164668E-5 6.855438581654762E-4 0.0 0.046161697502882945 2.0932636890548894E-5 44-45 6.803106989428391E-5 7.117096542786623E-4 0.0 0.056371591146248165 2.0932636890548894E-5 46-47 7.326422911692112E-5 7.221759727239368E-4 0.0 0.06696350541286591 2.0932636890548894E-5 48-49 7.326422911692112E-5 7.221759727239368E-4 0.0 0.0775187875649252 2.0932636890548894E-5 50-51 7.326422911692112E-5 8.059065202861324E-4 0.0 0.08858168616158027 2.0932636890548894E-5 52-53 8.373054756219558E-5 8.059065202861324E-4 0.0 0.12249779108349212 2.6165796113186118E-5 54-55 8.373054756219558E-5 8.111396795087696E-4 0.0 0.16346819463751894 3.139895533582334E-5 56-57 8.373054756219558E-5 8.268391571766813E-4 0.0 0.21848439754510407 3.663211455846056E-5 58-59 8.373054756219558E-5 8.477717940672301E-4 0.0 0.2551217452627873 4.186527378109779E-5 60-61 8.373054756219558E-5 8.739375901804162E-4 0.0 0.27106718141416286 4.186527378109779E-5 62-63 8.373054756219558E-5 9.315023416294258E-4 0.0 0.2857043277598792 4.186527378109779E-5 64-65 8.373054756219558E-5 0.0010884971183085426 0.0 0.29286852273566955 4.186527378109779E-5 66-67 8.373054756219558E-5 0.0010884971183085426 0.0 0.29878722581647227 5.2331592226372235E-5 68-69 8.373054756219558E-5 0.0011146629144217286 0.0 0.30507748320208217 6.279791067164668E-5 70-71 8.896370678483279E-5 0.0011408287105349147 0.0 0.31013271501114975 7.326422911692112E-5 72-73 9.419686600747002E-5 0.0011408287105349147 0.0 0.3139162891291165 7.326422911692112E-5 74-75 9.419686600747002E-5 0.001198393461983924 0.0 0.316909656204465 7.326422911692112E-5 76-77 9.419686600747002E-5 0.0012245592580971102 0.0 0.3198035932545834 7.326422911692112E-5 78-79 1.0466318445274447E-4 0.0012350255765423846 0.0 0.3216456653009517 7.326422911692112E-5 80-81 1.0466318445274447E-4 0.0012350255765423846 0.0 0.3222108464969965 7.326422911692112E-5 82-83 1.0466318445274447E-4 0.0012350255765423846 0.0 0.3226190329163622 7.326422911692112E-5 84-85 1.0466318445274447E-4 0.0012350255765423846 0.0 0.3228178929668224 7.849738833955835E-5 86-87 1.0466318445274447E-4 0.0012350255765423846 0.0 0.3229173229920525 8.373054756219558E-5 88 1.0466318445274447E-4 0.001287357168768757 0.0 0.32293825562894307 9.419686600747002E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11575 0.0 51.59412 1 GTATCAA 21440 0.0 39.611366 1 TCAACGC 25205 0.0 32.839485 4 ATCAACG 25465 0.0 32.504192 3 CAACGCA 25970 0.0 31.872131 5 TATCAAC 26800 0.0 31.206764 2 AACGCAG 26545 0.0 31.180271 6 ACGCAGA 30415 0.0 27.241228 7 CGCAGAG 30900 0.0 26.785772 8 GTACATG 27695 0.0 23.726105 1 TACATGG 27940 0.0 22.885767 2 GCAGAGT 36735 0.0 22.624939 9 ACATGGG 27965 0.0 22.248877 3 GAGTACT 21500 0.0 21.001875 12-13 CAGAGTA 35590 0.0 19.878353 10-11 AGAGTAC 32635 0.0 19.552696 10-11 CATGGGG 20865 0.0 19.494373 4 GTACTTT 24115 0.0 18.670956 14-15 GTGGTAT 5510 0.0 17.438583 1 AGTACTT 23825 0.0 16.990225 12-13 >>END_MODULE