##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139336_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7312676 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.809461406467346 32.0 25.0 33.0 18.0 33.0 2 30.62693834650954 32.0 30.0 33.0 25.0 33.0 3 31.55542745227602 33.0 31.0 33.0 29.0 33.0 4 31.771548746313936 33.0 31.0 33.0 29.0 34.0 5 32.47020598205089 33.0 33.0 33.0 31.0 34.0 6 36.312440890311564 38.0 37.0 38.0 34.0 38.0 7 36.93385513046113 38.0 37.0 38.0 35.0 38.0 8 36.844794162902886 38.0 38.0 38.0 35.0 38.0 9 37.10772390298709 38.0 38.0 38.0 36.0 38.0 10-11 37.212072639345706 38.0 38.0 38.0 36.0 38.0 12-13 37.240008650731966 38.0 38.0 38.0 36.0 38.0 14-15 37.23614091476226 38.0 38.0 38.0 36.0 38.0 16-17 37.236823906870754 38.0 38.0 38.0 36.0 38.0 18-19 37.24938271571173 38.0 38.0 38.0 36.0 38.0 20-21 37.22381910102137 38.0 38.0 38.0 36.0 38.0 22-23 37.24454370575751 38.0 38.0 38.0 36.0 38.0 24-25 37.267802090380655 38.0 38.0 38.0 37.0 38.0 26-27 37.24555772129933 38.0 38.0 38.0 36.5 38.0 28-29 37.22543387936306 38.0 38.0 38.0 36.0 38.0 30-31 37.22373262234895 38.0 38.0 38.0 36.0 38.0 32-33 37.164420096069875 38.0 38.0 38.0 36.0 38.0 34-35 37.17478779752628 38.0 38.0 38.0 36.0 38.0 36-37 37.17488709639428 38.0 38.0 38.0 36.0 38.0 38-39 37.163132837010394 38.0 38.0 38.0 36.0 38.0 40-41 37.155697847062086 38.0 38.0 38.0 36.0 38.0 42-43 37.125544729800744 38.0 38.0 38.0 36.0 38.0 44-45 37.0971554241234 38.0 38.0 38.0 36.0 38.0 46-47 37.064503789478 38.0 38.0 38.0 36.0 38.0 48-49 37.015269284495936 38.0 38.0 38.0 36.0 38.0 50-51 36.981279250762505 38.0 38.0 38.0 36.0 38.0 52-53 36.94459960677362 38.0 38.0 38.0 36.0 38.0 54-55 36.91451746386501 38.0 38.0 38.0 36.0 38.0 56-57 36.88066856647582 38.0 38.0 38.0 35.5 38.0 58-59 36.883523142596516 38.0 38.0 38.0 35.0 38.0 60-61 36.91056127459531 38.0 38.0 38.0 36.0 38.0 62-63 36.91890963804752 38.0 38.0 38.0 36.0 38.0 64-65 36.916794486571746 38.0 38.0 38.0 35.5 38.0 66-67 36.91995499661149 38.0 38.0 38.0 35.5 38.0 68-69 36.92166203861636 38.0 38.0 38.0 35.5 38.0 70-71 36.90571578276703 38.0 38.0 38.0 35.0 38.0 72-73 36.878381142584416 38.0 38.0 38.0 35.0 38.0 74-75 36.87147662555866 38.0 38.0 38.0 35.0 38.0 76-77 36.86863967467037 38.0 38.0 38.0 35.0 38.0 78-79 36.83690671289669 38.0 38.0 38.0 35.0 38.0 80-81 36.805703176575236 38.0 38.0 38.0 35.0 38.0 82-83 36.80277182587777 38.0 38.0 38.0 35.0 38.0 84-85 36.74744741181297 38.0 38.0 38.0 35.0 38.0 86-87 36.72871133514866 38.0 38.0 38.0 35.0 38.0 88-89 36.73044952260145 38.0 38.0 38.0 35.0 38.0 90-91 36.7047548222026 38.0 38.0 38.0 34.0 38.0 92-93 36.711532442175354 38.0 38.0 38.0 34.0 38.0 94-95 36.65300201936568 38.0 38.0 38.0 34.0 38.0 96-97 36.620641017446864 38.0 38.0 38.0 34.0 38.0 98-99 36.71224305549836 38.0 38.0 38.0 34.0 38.0 100 35.04856278596764 38.0 35.0 38.0 28.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 8.0 19 28.0 20 104.0 21 322.0 22 871.0 23 2149.0 24 4847.0 25 9012.0 26 15003.0 27 24098.0 28 35650.0 29 51456.0 30 70816.0 31 94178.0 32 123993.0 33 165975.0 34 244203.0 35 423219.0 36 1155577.0 37 4891166.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.45905985715763 18.734277301496743 13.698801916015423 23.107860925330208 2 14.553730781375407 20.286966036116496 42.79251577742942 22.36678740507867 3 17.51583141383537 27.14329200418561 30.537138524939433 24.803738057039585 4 12.143817119752057 18.327681959381216 39.002890323597 30.525610597269726 5 13.272637886130054 37.672139285452985 35.837272383525935 13.217950444891018 6 29.70398765539472 38.26303887992727 18.86366234594542 13.169311118732589 7 26.28965101147651 33.00277490757145 23.460741320961027 17.24683275999101 8 24.619222839901564 36.69725009011749 21.045018266910773 17.638508803070177 9 25.969371540596082 16.5394583323533 21.100046002311604 36.391124124739015 10-11 24.30984908944414 26.54888579775721 29.061269773199307 20.07999533959935 12-13 25.22693470899025 24.28340186273807 29.093638224912468 21.39602520335921 14-15 22.478214541434628 25.43429382075727 26.57287154524554 25.514620092562556 16-17 21.906713766615667 28.59314428808278 27.203687131769545 22.29645481353201 18-19 21.970213092990857 27.718300386889833 28.967084005909737 21.344402514209573 20-21 22.789431266260102 26.835204779934056 28.82043719379351 21.554926760012332 22-23 22.652302760172237 26.70049884640956 28.726073879158044 21.921124514260164 24-25 22.319256242712704 26.89591432703848 28.768724718851402 22.016104711397418 26-27 22.242055082535988 26.97556411200078 28.724019441249094 22.05836136421414 28-29 22.234565921282705 26.929275234125843 28.775550362337782 22.060608482253674 30-31 22.454054919537683 26.813298102670906 28.605155727074816 22.127491250716595 32-33 22.243258735506284 27.026921149322693 28.638135419085785 22.091684696085235 34-35 22.397741958022337 27.001306884981467 28.61694378716618 21.98400736983002 36-37 22.409531137325803 26.875157420409966 28.599898560875552 22.11541288138868 38-39 22.244207885276317 27.03574141891525 28.675850149105525 22.04420054670291 40-41 22.39959499470161 26.837454785060018 28.631805195577204 22.131145024661173 42-43 22.342317935386244 26.97748684981185 28.38629144866663 22.29390376613528 44-45 22.360627114904204 27.05244743333551 28.325824903636203 22.261100548124084 46-47 22.523786670486075 27.015586526474504 28.084884878037307 22.37574192500211 48-49 22.458864303373556 27.161015643135546 27.952925535984903 22.427194517506 50-51 22.38795183410135 27.291238114907657 27.861007077503785 22.459802973487207 52-53 22.630595617494865 27.145007522682736 27.760117842356458 22.46427901746594 54-55 22.559064376619524 27.04722697116152 27.799016826350005 22.59469182586895 56-57 22.51563933926728 27.165425204976028 27.855437729469894 22.463497726286793 58-59 22.558157815291104 27.11610561749218 27.830329111990675 22.495407455226044 60-61 22.58913124765547 27.178995297252563 27.841532783411 22.390340671680963 62-63 22.545306016111823 27.27598419283294 27.723503626323776 22.45520616473146 64-65 22.55735907044093 27.226946304046333 27.683337756427346 22.532356869085383 66-67 22.616826378463028 27.209992852269732 27.60275951268377 22.57042125658347 68-69 22.481090412359542 27.207761714100965 27.686818866751455 22.624329006788038 70-71 22.62982977087475 26.964076900297645 27.690158619611893 22.71593470921571 72-73 22.671469696738917 27.024921747673375 27.5440097939165 22.75959876167121 74-75 22.45188479310037 27.243946156178588 27.589395235178493 22.714773815542554 76-77 22.768573965889846 27.041277167095295 27.525147066497336 22.66500180051752 78-79 22.592303667761033 27.118122514791466 27.426907190472132 22.862666626975372 80-81 22.70751173120947 27.14521783895269 27.36604109004836 22.78122933978948 82-83 22.718025457456882 27.09278305898959 27.436293937583123 22.752897545970402 84-85 22.72356905511444 27.100676289695834 27.39601368460457 22.77974097058516 86-87 22.662359363760977 27.160488172305687 27.51679491877367 22.66035754515967 88-89 22.690866456168408 27.145203106090076 27.37581340911659 22.788117028624924 90-91 22.77198699466078 27.107654297680938 27.414887900609347 22.705470807048933 92-93 22.79986778538328 27.07577604945352 27.388573067182097 22.7357830979811 94-95 22.70906689770466 27.09401726814701 27.392059465649943 22.804856368498392 96-97 22.828684746134364 27.20018730150186 27.438220794157285 22.532907158206488 98-99 23.866589454237722 29.182260444450154 27.563572312416902 19.38757778889523 100 22.79695720539564 29.829041621065677 21.57292092459025 25.801080248948434 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1909.0 1 1802.0 2 2343.5 3 3138.0 4 3768.5 5 5193.5 6 6465.5 7 8047.5 8 10352.5 9 11482.0 10 10757.0 11 10008.5 12 10967.0 13 13208.0 14 17020.0 15 21554.5 16 25236.0 17 27571.0 18 27693.0 19 25655.0 20 22882.5 21 20999.0 22 21147.0 23 24203.0 24 30503.5 25 39948.5 26 52422.0 27 66914.0 28 83947.5 29 104386.5 30 124275.5 31 143739.0 32 164189.0 33 181859.0 34 197218.5 35 210834.0 36 225264.0 37 240340.5 38 250132.5 39 253198.5 40 255312.5 41 258517.0 42 260575.5 43 264843.0 44 269879.5 45 275488.5 46 280067.0 47 282728.0 48 284953.0 49 284184.0 50 282659.0 51 280923.5 52 276111.0 53 267575.0 54 257141.0 55 244641.5 56 230233.0 57 212627.0 58 191537.5 59 167801.0 60 140976.5 61 114747.0 62 91191.0 63 70895.5 64 53652.5 65 39422.5 66 29186.5 67 22422.5 68 17177.5 69 12620.5 70 9178.0 71 6677.5 72 4759.5 73 3227.0 74 2116.0 75 1362.5 76 836.0 77 496.5 78 321.0 79 197.5 80 126.0 81 77.0 82 54.0 83 42.0 84 29.5 85 24.0 86 16.5 87 13.0 88 9.5 89 5.0 90 3.0 91 2.0 92 1.5 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.002365755025930316 3 0.0 4 0.0 5 0.002885400638562409 6 1.0939907634359842E-4 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 8.422289673844727E-5 44-45 2.1202928350569783E-5 46-47 0.0 48-49 0.0 50-51 2.1724790498793222E-5 52-53 0.0011887951029226711 54-55 0.0022693531205257847 56-57 0.0027006066080366205 58-59 0.0019017158921475017 60-61 0.004316606707946662 62-63 0.0018424522842768912 64-65 0.0017885693906068922 66-67 2.467121177205373E-4 68-69 2.0231398959997155E-4 70-71 2.671375201168303E-4 72-73 0.0 74-75 0.0 76-77 0.0 78-79 1.1418030489240586E-4 80-81 4.8612023730906903E-4 82-83 0.0 84-85 8.402679244693247E-6 86-87 0.0 88-89 0.0 90-91 4.329915298196937E-5 92-93 3.8525965055723866E-4 94-95 0.0 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 54.0 20-21 304.0 22-23 655.0 24-25 789.0 26-27 2034.0 28-29 4849.0 30-31 12388.0 32-33 15961.0 34-35 22042.0 36-37 34731.0 38-39 42223.0 40-41 41660.0 42-43 46848.0 44-45 56541.0 46-47 58168.0 48-49 55984.0 50-51 50223.0 52-53 46902.0 54-55 49815.0 56-57 52466.0 58-59 55069.0 60-61 55349.0 62-63 52689.0 64-65 55035.0 66-67 58821.0 68-69 61565.0 70-71 62479.0 72-73 56810.0 74-75 56122.0 76-77 57984.0 78-79 62019.0 80-81 61656.0 82-83 58097.0 84-85 55685.0 86-87 57095.0 88-89 61456.0 90-91 64005.0 92-93 63241.0 94-95 76144.0 96-97 228428.0 98-99 504594.0 100-101 4853696.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.91953174090956 #Duplication Level Percentage of deduplicated Percentage of total 1 88.58975885006804 73.45821320887738 2 7.643724630266124 12.676281341962481 3 2.0242947992022002 5.0356073056621495 4 0.7741020657584209 2.5675272324943617 5 0.37538628824591525 1.5563427621654695 6 0.1854460187493479 0.9226258222747117 7 0.11469806326666289 0.6657496788362633 8 0.07625551963191736 0.5058457584430658 9 0.05458259993172791 0.40733672647862523 >10 0.15856183993155165 1.9838970163763439 >50 0.0027665804845830675 0.1470165886193759 >100 3.9372868845735735E-4 0.049544932487230485 >500 2.9015775061721227E-5 0.0240116253225505 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 5.469953817179922E-5 0.0 0.0 0.0 5 0.0 8.204930725769882E-5 0.0 0.0 0.0 6 4.102465362884941E-5 8.204930725769882E-5 0.0 0.0 1.3674884542949804E-5 7 4.102465362884941E-5 8.204930725769882E-5 0.0 0.0 1.3674884542949804E-5 8 4.102465362884941E-5 8.204930725769882E-5 0.0 0.0 1.3674884542949804E-5 9 4.102465362884941E-5 1.6409861451539763E-4 0.0 1.3674884542949804E-5 1.3674884542949804E-5 10-11 4.102465362884941E-5 1.6409861451539763E-4 0.0 1.3674884542949804E-5 1.3674884542949804E-5 12-13 4.102465362884941E-5 1.6409861451539763E-4 0.0 1.3674884542949804E-5 2.7349769085899606E-5 14-15 4.102465362884941E-5 2.461479217730965E-4 0.0 1.3674884542949804E-5 4.786209590032431E-5 16-17 1.2307396088654825E-4 2.5982280631604626E-4 0.0 1.3674884542949804E-5 5.469953817179922E-5 18-19 1.2307396088654825E-4 2.5982280631604626E-4 0.0 1.3674884542949804E-5 6.837442271474902E-5 20-21 1.2307396088654825E-4 2.5982280631604626E-4 0.0 1.3674884542949804E-5 6.837442271474902E-5 22-23 1.2307396088654825E-4 3.076849022163706E-4 0.0 2.0512326814424708E-5 7.521186498622392E-5 24-25 1.2307396088654825E-4 3.692218826596447E-4 0.0 3.418721135737451E-5 8.888674952917371E-5 26-27 1.2307396088654825E-4 3.828967672025945E-4 0.0 9.572419180064863E-5 1.0256163407212354E-4 28-29 1.2307396088654825E-4 3.897342094740694E-4 0.0 3.8973420947406947E-4 1.0939907634359844E-4 30-31 1.2307396088654825E-4 4.3759630537439374E-4 0.0 0.0012307396088654823 1.0939907634359844E-4 32-33 1.2307396088654825E-4 4.3759630537439374E-4 0.0 0.002858050869476509 1.0939907634359844E-4 34-35 1.2307396088654825E-4 5.401579394465172E-4 0.0 0.004950308204547829 1.0939907634359844E-4 36-37 1.2307396088654825E-4 6.29044688975691E-4 0.0 0.00838270422482823 1.0939907634359844E-4 38-39 1.2307396088654825E-4 6.769067848760152E-4 0.0 0.018064522481236692 1.0939907634359844E-4 40-41 1.2307396088654825E-4 7.999807457625635E-4 0.0 0.028799306847452286 1.2307396088654825E-4 42-43 1.2307396088654825E-4 8.478428416628878E-4 0.0 0.034686344643192174 1.2991140315802316E-4 44-45 1.2307396088654825E-4 9.572419180064862E-4 0.0 0.04209813206547097 1.4358628770097293E-4 46-47 1.2307396088654825E-4 0.0010119414561782854 0.0 0.04993384090858121 1.5726117224392275E-4 48-49 1.2307396088654825E-4 0.0010119414561782854 0.0 0.0575097269453754 1.7777349905834746E-4 50-51 1.3674884542949804E-4 0.0011623651861507333 0.0 0.06610439188061934 1.7777349905834746E-4 52-53 1.3674884542949804E-4 0.0011623651861507333 0.0 0.08671928032911619 1.7777349905834746E-4 54-55 1.3674884542949804E-4 0.001182877512965158 0.0 0.11073237758653603 1.7777349905834746E-4 56-57 1.3674884542949804E-4 0.0012170647243225326 0.0 0.1410085719646269 1.7777349905834746E-4 58-59 1.3674884542949804E-4 0.0012170647243225326 0.0 0.16539772854697787 1.7777349905834746E-4 60-61 1.3674884542949804E-4 0.0012307396088654823 0.0 0.17444366467213918 1.7777349905834746E-4 62-63 1.3674884542949804E-4 0.001244414493408432 0.0 0.18647756306993502 1.7777349905834746E-4 64-65 1.3674884542949804E-4 0.0013538135697520306 0.0 0.1918996547912146 1.7777349905834746E-4 66-67 1.3674884542949804E-4 0.0013674884542949804 0.0 0.19716448534025027 1.7777349905834746E-4 68-69 1.3674884542949804E-4 0.0014085131079238297 0.0 0.20288058707920328 1.7777349905834746E-4 70-71 1.5726117224392275E-4 0.0014427003192812042 0.0 0.20809071809006716 1.8461094132982234E-4 72-73 1.7777349905834746E-4 0.0014700500883671039 0.0 0.21174874970530622 2.0512326814424705E-4 74-75 1.7777349905834746E-4 0.0015042372997244784 0.0 0.21479141151611258 2.0512326814424705E-4 76-77 1.7777349905834746E-4 0.001593124049253652 0.0 0.2176221126165032 2.0512326814424705E-4 78-79 1.7777349905834746E-4 0.0016409861451539764 0.0 0.21948189691434433 2.0512326814424705E-4 80-81 1.7777349905834746E-4 0.0016409861451539764 0.0 0.22002205485379087 2.0512326814424705E-4 82-83 1.7777349905834746E-4 0.0016614984719684012 0.0 0.22052802558188 2.0512326814424705E-4 84-85 1.7777349905834746E-4 0.0016956856833257757 0.0 0.2207194739654813 2.1879815268719687E-4 86-87 1.7777349905834746E-4 0.0017230354524116753 0.0 0.22082203559955343 2.2563559495867176E-4 88 1.7777349905834746E-4 0.001818759644212324 0.0 0.22082203559955343 2.3247303723014667E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9385 0.0 53.647514 1 GTATCAA 17635 0.0 38.675354 1 TCAACGC 20970 0.0 31.643324 4 ATCAACG 20990 0.0 31.551826 3 CAACGCA 21300 0.0 31.153076 5 AACGCAG 21940 0.0 30.302185 6 TATCAAC 22130 0.0 30.237825 2 ACGCAGA 24915 0.0 26.666697 7 CGCAGAG 25545 0.0 25.958628 8 GTACATG 23145 0.0 23.88606 1 TACATGG 23365 0.0 22.944708 2 ACATGGG 23165 0.0 22.456463 3 GCAGAGT 30520 0.0 21.825607 9 GAGTACT 16955 0.0 20.99799 12-13 CATGGGG 18160 0.0 20.160637 4 CAGAGTA 29505 0.0 19.623455 10-11 AGAGTAC 26895 0.0 19.572899 10-11 GTGGTAT 4235 0.0 19.155535 1 GTACTTT 19410 0.0 18.264997 14-15 AGTACTT 18820 0.0 17.18394 12-13 >>END_MODULE