##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139334_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 21445624 Sequences flagged as poor quality 0 Sequence length 19-100 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.615612024159333 31.0 31.0 34.0 30.0 34.0 2 31.71340857230361 31.0 31.0 34.0 30.0 34.0 3 31.800901946243204 31.0 31.0 34.0 30.0 34.0 4 35.56945239737487 37.0 35.0 37.0 33.0 37.0 5 35.42440509075418 37.0 35.0 37.0 33.0 37.0 6 35.45390621415353 37.0 35.0 37.0 33.0 37.0 7 35.36105501056999 37.0 35.0 37.0 32.0 37.0 8 35.3337145610685 37.0 35.0 37.0 32.0 37.0 9 36.93918596166752 39.0 37.0 39.0 33.0 39.0 10-11 36.83268460735859 39.0 37.0 39.0 32.5 39.0 12-13 36.793954911267676 39.0 37.0 39.0 32.0 39.0 14-15 37.92241780887327 40.0 37.0 41.0 33.0 41.0 16-17 37.88315089362753 40.0 37.0 41.0 32.0 41.0 18-19 37.89931290877803 40.0 37.0 41.0 32.0 41.0 20-21 37.86231181241696 40.0 37.0 41.0 32.0 41.0 22-23 37.78120108761172 40.0 37.0 41.0 32.0 41.0 24-25 37.68202834198351 39.5 37.0 41.0 32.0 41.0 26-27 37.46717690049868 39.0 36.0 41.0 32.0 41.0 28-29 37.32325293459879 39.0 36.0 41.0 31.0 41.0 30-31 37.14889494096518 39.0 36.0 40.5 31.0 41.0 32-33 36.96624637437459 39.0 36.0 40.0 30.5 41.0 34-35 36.82342816684117 39.0 35.0 40.0 30.0 41.0 36-37 36.65272187276337 38.0 35.0 40.0 30.0 41.0 38-39 36.503496715412325 38.0 35.0 40.0 30.0 41.0 40-41 36.35690594098897 38.0 35.0 40.0 30.0 41.0 42-43 36.16336325707957 38.0 35.0 40.0 30.0 41.0 44-45 36.24998511819044 38.0 34.5 40.0 29.5 41.0 46-47 36.71529818955794 39.0 35.0 40.0 30.0 41.0 48-49 36.81657007750107 39.0 35.0 40.0 30.0 41.0 50-51 36.783243382606585 39.0 35.0 40.0 30.0 41.0 52-53 36.67234839268255 39.0 35.0 40.0 30.0 41.0 54-55 36.528319010077 38.5 35.0 40.0 30.0 41.0 56-57 36.370092005439105 38.0 35.0 40.0 29.5 41.0 58-59 36.20923749810138 38.0 34.0 40.0 29.0 41.0 60-61 36.027132187524806 38.0 34.0 40.0 28.5 41.0 62-63 35.82027218038007 38.0 34.0 40.0 28.0 41.0 64-65 35.555548733184125 37.0 34.0 40.0 28.0 41.0 66-67 35.29263456962708 37.0 33.5 40.0 28.0 41.0 68-69 35.01635989485541 36.0 33.0 39.0 28.0 41.0 70-71 34.711474574843294 36.0 33.0 39.0 28.0 40.5 72-73 34.40561926413866 35.5 32.5 39.0 27.5 40.0 74-75 34.08660077541811 35.0 32.0 38.0 27.0 40.0 76-77 32.25155963573373 33.5 30.0 36.0 25.5 38.5 78-79 33.37653124386249 35.0 31.5 37.0 26.5 39.0 80-81 33.43065560056414 35.0 32.0 36.0 27.0 39.0 82-83 33.21222928786679 35.0 32.0 36.0 27.0 38.0 84-85 32.973520899323525 34.5 32.0 36.0 26.5 37.0 86-87 32.75150749105068 34.0 31.5 35.0 26.0 37.0 88-89 32.57717809379924 34.0 31.0 35.0 26.0 36.0 90-91 32.43528350604533 34.0 31.0 35.0 26.0 36.0 92-93 32.35468088099991 34.0 31.0 35.0 26.0 36.0 94-95 32.357402860169195 34.0 31.0 35.0 26.5 35.5 96-97 32.44616502173434 34.0 31.0 35.0 27.0 35.0 98-99 32.59314420855489 34.0 31.5 35.0 28.0 35.0 100 31.013583807417863 33.0 29.0 34.0 25.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 1.0 18 6.0 19 39.0 20 254.0 21 1705.0 22 7780.0 23 25590.0 24 64297.0 25 130130.0 26 224585.0 27 340554.0 28 467820.0 29 601136.0 30 737741.0 31 883870.0 32 1059099.0 33 1281666.0 34 1589085.0 35 2022490.0 36 2712738.0 37 3699376.0 38 3810385.0 39 1722452.0 40 62823.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.9137651578709 21.806961644016514 14.955825020526332 23.323448177586254 2 14.247345689658472 22.39670383038858 41.784218153248226 21.57173232670472 3 17.59258205776619 27.735980076867893 31.49605719096819 23.175380674397722 4 12.293305151671035 19.06685018817825 40.034078747253986 28.60576591289673 5 12.181184375889458 38.925008663772154 36.675407533023986 12.218399427314402 6 28.436626511776947 40.03007793105018 19.103846080673613 12.429449476499261 7 24.892482702411154 33.59743078528067 24.63639310201305 16.87369341029513 8 23.375048448112302 38.07912047697936 21.759693259566614 16.78613781534172 9 25.022699269557275 16.882754262594553 21.908152451054814 36.18639401679336 10-11 23.32723798011165 27.39871026519391 30.120195211398304 19.15385654329613 12-13 24.123095211988122 25.0538206575874 30.112546300150804 20.71053783027367 14-15 21.3845086055725 26.567061321743736 27.438351624987984 24.610078447695784 16-17 20.897446592367274 29.65255026712501 28.12452190025011 21.325481240257606 18-19 20.95886914345486 28.877314901166724 29.72061198369367 20.443203971684753 20-21 21.7159630425006 28.092083922689415 29.54086930667103 20.651083728138957 22-23 21.476193945348083 27.928289727199353 29.417552779912615 21.177963547539957 24-25 21.272843403616314 28.13421967993931 29.405048553418766 21.187888363025607 26-27 21.275844758758677 28.239610180162344 29.296212907363493 21.188332153715482 28-29 21.266027448224044 28.27620162008297 29.33118906832196 21.126581863371026 30-31 21.564065845359927 28.143512833319285 29.150256419419307 21.142164901901484 32-33 21.37506386389722 28.339193173812255 29.116081940148923 21.1696610221416 34-35 21.48325682485678 28.315570872971268 29.117183635714206 21.08398866645775 36-37 21.501755807595046 28.257688925331365 29.08033914531696 21.16021612175663 38-39 21.34510090346432 28.377936657521435 29.13833662764481 21.138625811369433 40-41 21.522102825745776 28.25858654124608 29.014379481767826 21.204931151240324 42-43 21.447833462283974 28.36045100397364 28.767359600090703 21.424355933651682 44-45 21.53094203749838 28.46826105228482 28.58609476449365 21.414702145723147 46-47 21.64575201615826 28.39555966144789 28.37476997559632 21.58391834679753 48-49 21.555124222664578 28.488143976093166 28.417657034371697 21.539074766870563 50-51 21.559324938883066 28.585451628302366 28.308007427508507 21.54721600530606 52-53 21.697542509311496 28.496354691544784 28.188591932777328 21.617510866366395 54-55 21.665005819592995 28.408532272007236 28.284931414149106 21.641530494250667 56-57 21.673451463676997 28.485882926883697 28.253903325068986 21.586762284370316 58-59 21.65030668393716 28.507411670996248 28.241356698028774 21.600924947037818 60-61 21.740067680231512 28.49876026566741 28.220539050131784 21.540633003969294 62-63 21.678988403687075 28.5540933372825 28.174116364060165 21.59280189497026 64-65 21.67630058568927 28.489885411315342 28.159444165014254 21.674369837981132 66-67 21.732409865693462 28.476766144978587 28.077399460700782 21.71342452862717 68-69 21.662624578469007 28.51810690584628 28.124554758927513 21.694713756757203 70-71 21.694447586355384 28.28668358601699 28.19198307019593 21.826885757431693 72-73 21.726466103777906 28.360210875682284 28.109341663500814 21.803981357038992 74-75 21.556967736525635 28.469680197811243 28.145200921434594 21.82815114422852 76-77 21.664253178344577 28.354965278294546 28.16992342696427 21.810858116396602 78-79 21.653155106717783 28.41032798091908 28.05534891807568 21.88116799428746 80-81 21.703658451510094 28.403501927478143 28.084936053165737 21.807903567846022 82-83 21.686152646910124 28.317458660173926 28.227441454928144 21.768947237987806 84-85 21.78541743258459 28.266518690997096 28.164513404066838 21.78355047235148 86-87 21.608761282387363 28.305390383095418 28.285175654698165 21.80067267981905 88-89 21.695632252539234 28.271371660047567 28.210129924995076 21.822866162418126 90-91 21.75916723102408 28.268665922668728 28.2805444538769 21.691622392430297 92-93 21.74824660659246 28.145729944556397 28.30832916362207 21.79769428522907 94-95 21.547776925737143 28.181374391668047 28.428182162946925 21.842666519647892 96-97 21.547685738009623 28.309669097800565 28.544286114601313 21.5983590495885 98-99 22.532810371102045 30.299122353560648 28.824580249784287 18.34348702555302 100 22.05242923016203 30.882458891741116 22.648418449373008 24.41669342872385 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4169.0 1 3709.5 2 5200.0 3 7582.5 4 10081.5 5 16536.0 6 22605.5 7 27361.0 8 30795.5 9 30509.5 10 27353.0 11 23889.0 12 24963.5 13 32137.5 14 48606.5 15 73955.5 16 95819.5 17 108525.0 18 114138.5 19 112873.5 20 108475.5 21 104207.5 22 102080.0 23 108527.5 24 127489.0 25 160429.0 26 207597.5 27 262293.5 28 325580.5 29 399294.0 30 470885.0 31 543603.0 32 621160.0 33 689575.0 34 749272.0 35 801264.0 36 850649.0 37 888332.5 38 896362.0 39 886356.5 40 880467.0 41 871984.0 42 854835.5 43 843516.0 44 831529.0 45 821391.0 46 808937.0 47 793112.0 48 779521.0 49 759692.0 50 738242.5 51 714616.0 52 683432.5 53 645587.0 54 604496.0 55 561038.5 56 516945.5 57 469340.0 58 418079.5 59 363789.5 60 305386.0 61 248875.5 62 198616.0 63 154419.5 64 116292.0 65 86909.5 66 65509.5 67 50211.0 68 38521.5 69 28409.0 70 20467.5 71 14793.0 72 10411.0 73 7199.5 74 4952.0 75 3409.0 76 2422.0 77 1710.0 78 1176.5 79 836.5 80 620.5 81 465.5 82 353.0 83 251.5 84 189.0 85 139.0 86 100.0 87 79.0 88 59.5 89 41.0 90 27.0 91 19.5 92 15.0 93 9.0 94 2.5 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.1262075657019819 3 0.0 4 0.0 5 0.0 6 0.0 7 2.3314779742478E-5 8 0.0 9 0.0 10-11 2.44805187296019E-4 12-13 4.406493371328342E-4 14-15 8.789671962914205E-4 16-17 2.1915892957929318E-4 18-19 0.0010071984848750496 20-21 5.36272554603563E-5 22-23 0.0019005603061660401 24-25 1.5629146389209973E-4 26-27 0.005288802580319488 28-29 0.0026766781592545024 30-31 0.004808129892845119 32-33 0.017377382470774593 34-35 0.003929423603850177 36-37 0.0021777240348936984 38-39 0.001219148805010028 40-41 6.801245415423649E-4 42-43 0.001311630256715589 44-45 3.148884363592182E-5 46-47 2.3957953107782895E-4 48-49 1.1833686120991897E-4 50-51 5.269048424021403E-4 52-53 2.2543414106887044E-5 54-55 0.0 56-57 0.0 58-59 1.5430161661032215E-4 60-61 0.0 62-63 1.3112600020618251E-5 64-65 3.707881740925694E-5 66-67 2.677007410893466E-6 68-69 2.0582095791944475E-4 70-71 8.772366038157709E-5 72-73 9.297636293842276E-4 74-75 1.2926324949712382E-4 76-77 0.0020403275724575243 78-79 0.002576317869441605 80-81 0.0026770016073991857 82-83 8.601873950867995E-5 84-85 0.0 86-87 0.0016248632100797577 88-89 4.3610404458154585E-4 90-91 5.277906245689843E-4 92-93 6.832031988484707E-5 94-95 2.6730679515926105E-5 96-97 0.0 98-99 0.0 100 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 798.0 20-21 2676.0 22-23 5243.0 24-25 10993.0 26-27 14118.0 28-29 21410.0 30-31 42752.0 32-33 55031.0 34-35 76762.0 36-37 104225.0 38-39 127319.0 40-41 133634.0 42-43 157150.0 44-45 196172.0 46-47 174520.0 48-49 165574.0 50-51 157183.0 52-53 156684.0 54-55 171691.0 56-57 183156.0 58-59 186406.0 60-61 190341.0 62-63 185108.0 64-65 196619.0 66-67 212540.0 68-69 222001.0 70-71 225195.0 72-73 221247.0 74-75 226773.0 76-77 213745.0 78-79 237299.0 80-81 252039.0 82-83 250922.0 84-85 259528.0 86-87 281524.0 88-89 314626.0 90-91 349983.0 92-93 388937.0 94-95 471006.0 96-97 945810.0 98-99 1581330.0 100-101 1.2075554E7 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.08900525636739 #Duplication Level Percentage of deduplicated Percentage of total 1 88.30633372114225 72.48979093005379 2 7.675272112012271 12.601109054940506 3 2.122864079106993 5.227914016451023 4 0.8325332977735032 2.733673210281199 5 0.4065578224661427 1.6686963612720236 6 0.20795699833470482 1.0242589877637582 7 0.1314010759342321 0.7550608529140256 8 0.08126809586000822 0.5336973718581747 9 0.057074055421025956 0.42166371919129225 >10 0.17422119039950468 2.1790525159691234 >50 0.0036066739173979774 0.19704589681336812 >100 8.448005649526612E-4 0.11282145699956742 >500 4.4122732386969575E-5 0.02446128423401401 >1k 2.195433463449226E-5 0.030754341258080256 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 4.6629559484956E-6 2 0.0 1.39888678454868E-5 0.0 4.6629559484956E-6 4.6629559484956E-6 3 0.0 1.39888678454868E-5 0.0 4.6629559484956E-6 4.6629559484956E-6 4 0.0 4.6629559484956E-5 0.0 4.6629559484956E-6 4.6629559484956E-6 5 0.0 6.0618427330442795E-5 0.0 4.6629559484956E-6 4.6629559484956E-6 6 5.12925154334516E-5 6.0618427330442795E-5 0.0 4.6629559484956E-6 1.86518237939824E-5 7 5.12925154334516E-5 6.52813832789384E-5 0.0 4.6629559484956E-6 1.86518237939824E-5 8 5.12925154334516E-5 6.52813832789384E-5 0.0 4.6629559484956E-6 1.86518237939824E-5 9 5.12925154334516E-5 1.1657389871239E-4 0.0 9.3259118969912E-6 6.52813832789384E-5 10-11 5.12925154334516E-5 1.1657389871239E-4 0.0 9.3259118969912E-6 7.69387731501774E-5 12-13 5.12925154334516E-5 1.328942445321246E-4 0.0 9.3259118969912E-6 8.85961630214164E-5 14-15 5.12925154334516E-5 1.8651823793982398E-4 0.0 9.3259118969912E-6 9.09276409956642E-5 16-17 8.393320707292079E-5 1.98175627811063E-4 0.0 2.3314779742478E-5 1.025850308669032E-4 18-19 8.393320707292079E-5 2.3314779742478E-4 0.0 2.3314779742478E-5 1.025850308669032E-4 20-21 8.393320707292079E-5 2.611255331157536E-4 0.0 2.56462577167258E-5 1.04916508841151E-4 22-23 8.393320707292079E-5 2.7977735690973597E-4 0.0 3.4972169613716996E-5 1.1657389871238999E-4 24-25 8.393320707292079E-5 3.077550926007096E-4 0.0 5.828694935619499E-5 1.2123685466088559E-4 26-27 8.62646850471686E-5 3.3106987234318757E-4 0.0 9.092764099566419E-5 1.258998106093812E-4 28-29 9.09276409956642E-5 3.3340135031743537E-4 0.0 3.007606586779662E-4 1.258998106093812E-4 30-31 9.3259118969912E-5 3.8702534372513477E-4 0.0 8.906245861626597E-4 1.258998106093812E-4 32-33 9.3259118969912E-5 3.96351255622126E-4 0.0 0.0023734445777842603 1.352257225063724E-4 34-35 9.3259118969912E-5 4.6629559484956E-4 0.0 0.00415469375010958 1.3988867845486798E-4 36-37 9.3259118969912E-5 5.292455001542506E-4 0.0 0.006712325087859416 1.492145903518592E-4 38-39 9.79220749184076E-5 5.409028900254896E-4 0.0 0.011006907516423864 1.608719802230982E-4 40-41 9.79220749184076E-5 5.968583614074368E-4 0.0 0.015404074975855215 1.6786641414584158E-4 42-43 9.79220749184076E-5 6.038527953301802E-4 0.0 0.020015738408917363 1.6786641414584158E-4 44-45 1.002535528926554E-4 6.737971345576143E-4 0.0 0.025480722780554205 1.6786641414584158E-4 46-47 1.025850308669032E-4 7.367470398623048E-4 0.0 0.03123247894302353 1.701978921200894E-4 48-49 1.025850308669032E-4 7.390785178365526E-4 0.0 0.03773963396914914 1.771923260428328E-4 50-51 1.142424207381422E-4 7.880395552957564E-4 0.0 0.04434237959221891 1.86518237939824E-4 52-53 1.1657389871239E-4 7.903710332700042E-4 0.0 0.050467172230567875 1.958441498368152E-4 54-55 1.1890537668663779E-4 8.230117249094734E-4 0.0 0.056636262950427556 2.075015397080542E-4 56-57 1.2123685466088559E-4 8.50989460600447E-4 0.0 0.06302218112189228 2.09833017682302E-4 58-59 1.2123685466088559E-4 8.719727623686771E-4 0.0 0.06900708508178638 2.09833017682302E-4 60-61 1.258998106093812E-4 8.906245861626596E-4 0.0 0.07447906388734597 2.09833017682302E-4 62-63 1.445516344033636E-4 9.046134540081464E-4 0.0 0.079757530021043 2.09833017682302E-4 64-65 1.445516344033636E-4 9.768892712098281E-4 0.0 0.0850989460600447 2.09833017682302E-4 66-67 1.51546068326107E-4 9.955410950038106E-4 0.0 0.09042171027525242 2.144959736307976E-4 68-69 1.538775463003548E-4 0.0010118614408235452 0.0 0.09591234090460599 2.1915892957929318E-4 70-71 1.655349361715938E-4 0.0010235188306947842 0.0 0.10102527210213141 2.284848414762844E-4 72-73 1.958441498368152E-4 0.0010351762205660232 0.0 0.10518229733021525 2.4247370932177118E-4 74-75 1.958441498368152E-4 0.001060822478282749 0.0 0.1084137258025227 2.4247370932177118E-4 76-77 2.028385837595586E-4 0.0011027890818192092 0.0 0.11139568613158563 2.4247370932177118E-4 78-79 2.051700617338064E-4 0.0011191094276389439 0.0 0.11354764030181635 2.4247370932177118E-4 80-81 2.051700617338064E-4 0.0011214409056131917 0.0 0.1142330948262452 2.471366652702668E-4 82-83 2.051700617338064E-4 0.0011237723835874395 0.0 0.1147157107669145 2.634570110900014E-4 84-85 2.051700617338064E-4 0.0011261038615616873 0.0 0.11499548812382424 2.68119967038497E-4 86-87 2.051700617338064E-4 0.0011424242073814219 0.0 0.11511439350051086 2.751144009612404E-4 88 2.144959736307976E-4 0.0011704019430723955 0.0 0.11512838236835636 2.7977735690973597E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 24685 0.0 47.317947 1 GTATCAA 43400 0.0 34.00511 1 TCAACGC 52190 0.0 27.557627 4 ATCAACG 52590 0.0 27.34796 3 CAACGCA 53565 0.0 26.826834 5 AACGCAG 54825 0.0 26.225613 6 TATCAAC 56390 0.0 25.783964 2 ACGCAGA 63480 0.0 22.617092 7 CGCAGAG 64180 0.0 22.396585 8 GTACATG 57680 0.0 20.075459 1 TACATGG 57835 0.0 19.658155 2 ACATGGG 56600 0.0 19.445456 3 GCAGAGT 75705 0.0 18.793146 9 GAGTACT 44250 0.0 18.007683 12-13 AGAGTAC 68335 0.0 17.888737 10-11 CAGAGTA 74925 0.0 17.209291 10-11 CATGGGG 40660 0.0 16.947659 4 GTGGTAT 13290 0.0 16.103474 1 GTACTTT 51555 0.0 15.420411 14-15 AGTACTT 50725 0.0 15.348888 12-13 >>END_MODULE