##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139333_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10313852 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 24.532951510260183 25.0 18.0 32.0 18.0 33.0 2 27.309954806409866 29.0 25.0 31.0 18.0 33.0 3 29.52671349171968 31.0 29.0 33.0 25.0 33.0 4 29.518698057718883 31.0 29.0 33.0 25.0 33.0 5 31.50454786436726 33.0 32.0 33.0 29.0 33.0 6 35.553442108729115 37.0 36.0 38.0 29.0 38.0 7 36.05717563137419 38.0 36.0 38.0 33.0 38.0 8 36.47866878446578 38.0 37.0 38.0 34.0 38.0 9 36.69666919789037 38.0 38.0 38.0 34.0 38.0 10-11 36.831385790682276 38.0 38.0 38.0 35.0 38.0 12-13 36.9030182418751 38.0 38.0 38.0 35.0 38.0 14-15 36.93187234992319 38.0 38.0 38.0 35.0 38.0 16-17 36.96512083943031 38.0 38.0 38.0 35.0 38.0 18-19 36.981608083963195 38.0 38.0 38.0 35.0 38.0 20-21 36.99246562069568 38.0 38.0 38.0 35.0 38.0 22-23 37.01287550697886 38.0 38.0 38.0 36.0 38.0 24-25 37.018070942453576 38.0 38.0 38.0 36.0 38.0 26-27 36.98849165804001 38.0 38.0 38.0 36.0 38.0 28-29 36.95884517668437 38.0 38.0 38.0 35.0 38.0 30-31 36.94989216800576 38.0 38.0 38.0 35.0 38.0 32-33 36.91261895891185 38.0 38.0 38.0 35.0 38.0 34-35 36.88380700538667 38.0 38.0 38.0 35.0 38.0 36-37 36.859507330980584 38.0 38.0 38.0 35.0 38.0 38-39 36.81774855767594 38.0 38.0 38.0 35.0 38.0 40-41 36.84738117896843 38.0 38.0 38.0 35.0 38.0 42-43 36.79909366721735 38.0 38.0 38.0 35.0 38.0 44-45 36.753605930279676 38.0 38.0 38.0 35.0 38.0 46-47 36.70311605175347 38.0 38.0 38.0 35.0 38.0 48-49 36.661209000729116 38.0 38.0 38.0 34.5 38.0 50-51 36.62980766292707 38.0 38.0 38.0 34.0 38.0 52-53 36.61292968137991 38.0 38.0 38.0 34.0 38.0 54-55 36.6016961115678 38.0 38.0 38.0 34.0 38.0 56-57 36.590561287707075 38.0 38.0 38.0 34.0 38.0 58-59 36.578578405262306 38.0 38.0 38.0 34.0 38.0 60-61 36.58396115811182 38.0 38.0 38.0 34.0 38.0 62-63 36.57156921532233 38.0 38.0 38.0 34.0 38.0 64-65 36.56558692732929 38.0 38.0 38.0 34.0 38.0 66-67 36.5377048008468 38.0 38.0 38.0 34.0 38.0 68-69 36.52302843656381 38.0 38.0 38.0 34.0 38.0 70-71 36.5280197720427 38.0 38.0 38.0 34.0 38.0 72-73 36.511606676243126 38.0 38.0 38.0 34.0 38.0 74-75 36.50958386631582 38.0 38.0 38.0 34.0 38.0 76-77 36.50783834548217 38.0 38.0 38.0 34.0 38.0 78-79 36.50040751754144 38.0 38.0 38.0 34.0 38.0 80-81 36.50291608088273 38.0 38.0 38.0 34.0 38.0 82-83 36.48989331195595 38.0 38.0 38.0 34.0 38.0 84-85 36.488980298818575 38.0 38.0 38.0 34.0 38.0 86-87 36.4815806945808 38.0 38.0 38.0 34.0 38.0 88-89 36.48742525976576 38.0 38.0 38.0 34.0 38.0 90-91 36.497313226300236 38.0 38.0 38.0 34.0 38.0 92-93 36.46968819970628 38.0 38.0 38.0 34.0 38.0 94-95 36.46908696093975 38.0 38.0 38.0 34.0 38.0 96-97 36.46952856228364 38.0 38.0 38.0 34.0 38.0 98-99 36.50221125939382 38.0 38.0 38.0 34.0 38.0 100-101 35.9813783441962 38.0 37.0 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 11.0 18 94.0 19 189.0 20 289.0 21 708.0 22 1836.0 23 5294.0 24 12234.0 25 23926.0 26 40830.0 27 63727.0 28 92685.0 29 124201.0 30 161583.0 31 204310.0 32 260096.0 33 341897.0 34 485358.0 35 806424.0 36 2026429.0 37 5661731.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.102359816681485 24.745245520296393 14.146344159291797 23.006050503730325 2 14.784156297763435 21.30060621385686 42.22098591292565 21.69425157545406 3 17.51448588992246 28.283032875729724 30.391702962392486 23.81077827195533 4 12.739498298017073 19.597265890571244 38.154619631928014 29.50861617948367 5 12.970670299874493 38.23196799263941 35.6725859898045 13.124775717681592 6 28.64123898617122 38.74246983571221 18.7905159003639 13.825775277752678 7 25.540079496971646 33.8241716092106 22.9101891320527 17.72555976176505 8 23.90428910556405 37.336205716351174 21.123746976396404 17.635758201688372 9 25.06355530407068 17.296050011188836 21.40080156279148 36.23959312194901 10-11 23.82259314948479 27.357756345543837 28.627698943130074 20.191951561841297 12-13 25.05593933285062 24.972827804781375 28.876558438108287 21.094674424259725 14-15 22.1121776221553 26.19406325388627 26.82964559737328 24.864113526585154 16-17 21.010598174183613 29.565820800996562 27.52727593919323 21.89630508562659 18-19 21.19936857732688 28.10788830400126 29.826746592834567 20.86599652583729 20-21 22.092051799504798 26.9349076728837 29.855253370715783 21.117787156895716 22-23 21.804602155988555 27.238203156051675 29.738666408609216 21.21852827935055 24-25 21.691951040104428 27.489435549213248 29.78775575911064 21.030857651571687 26-27 21.44462267616751 27.532130814809964 29.900633995700616 21.12261251332191 28-29 20.9026426299663 27.27528426527706 30.157990116520256 21.66408298823638 30-31 21.636271606412212 27.024140429457532 30.278996776739486 21.06059118739077 32-33 21.16085391204381 27.523648258947887 29.951581604319305 21.363916224689 34-35 21.210281514163558 27.617007984694375 30.350540772699762 20.8221697284423 36-37 21.509992898408033 27.428835599616047 29.84083358537484 21.220337916601085 38-39 21.212235664257015 27.278566572883 30.01707059582104 21.492127167038944 40-41 21.352917290151936 27.13363343412581 30.146738111351883 21.36671116437038 42-43 21.657241369166176 27.113932780053013 29.768965890919503 21.459859959861312 44-45 21.319384232323184 27.40244072095462 29.66556763058259 21.612607416139607 46-47 21.720289005225354 27.368317121169984 29.16287087005775 21.748523003546914 48-49 21.589680468143865 27.508316345993144 28.96995079655068 21.932052389312314 50-51 21.3852238817367 27.620186842252487 29.032440709060776 21.96214856695004 52-53 21.53215011104891 27.537179954985213 29.315324833520943 21.61534510044493 54-55 21.537327530080383 27.74288287349013 28.893603983496146 21.826185612933337 56-57 21.73535239080046 27.95811847907953 28.507225078424398 21.799304051695607 58-59 21.24794145067468 28.446310954429237 28.8648680999949 21.44087949490118 60-61 21.615052494843138 28.779481746622835 28.304841121797388 21.30062463673664 62-63 21.297859571344993 28.994205660516165 28.264083634319025 21.443851133819816 64-65 21.32893597122008 28.892987906204198 28.292520184970826 21.485555937604893 66-67 21.44183927049367 28.79538038636939 28.213703794195627 21.549076548941308 68-69 21.4280359079926 28.455807051377697 28.414257929457253 21.701899111172448 70-71 21.55351619180213 28.03239879962396 28.569729640153824 21.84435536842009 72-73 21.692249717255546 27.88759611526792 28.54039091658883 21.8797632508877 74-75 21.519052090214903 28.005548711623728 28.57868316241407 21.896716035747296 76-77 21.700374577938476 27.883218607718646 28.532086973287875 21.884319841055007 78-79 21.656380603766024 27.904887935894156 28.512206755994967 21.92652470434485 80-81 21.616496851802633 27.9788593468865 28.531080759515998 21.873563041794867 82-83 21.655816626654186 27.930202291481454 28.568721190035127 21.84525989182923 84-85 21.843087467744123 27.962146175173046 28.420292225628312 21.774474131454514 86-87 21.651269658954988 28.02186812078866 28.518090754364984 21.808771465891372 88-89 21.727819210584016 27.982499187638567 28.40710397815056 21.882577623626855 90-91 21.881060880278337 27.89611874990512 28.419975450782648 21.80284491903389 92-93 21.835083108227945 27.963396907569148 28.373563727116174 21.827956257086726 94-95 21.66625006836611 27.99660733374527 28.442423324409795 21.894719273478827 96-97 21.766173401006526 28.04714893167261 28.340402092280765 21.846275575040096 98-99 22.03378683367287 28.660777512516027 28.3522782857035 20.953157368107604 100-101 22.548575515191615 31.077895868453638 25.867496625622767 20.506031990731984 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4929.0 1 4875.5 2 5213.5 3 5855.5 4 7497.0 5 10689.5 6 13506.5 7 17479.5 8 21280.5 9 22148.5 10 20757.0 11 18895.5 12 19810.0 13 24648.0 14 35844.5 15 49861.0 16 59894.5 17 64478.0 18 63601.0 19 58186.5 20 51106.0 21 44463.5 22 41344.5 23 44919.5 24 54063.0 25 68154.0 26 85379.0 27 105364.5 28 130244.0 29 157124.5 30 184144.5 31 213036.0 32 240825.0 33 269494.0 34 295180.5 35 317341.0 36 342253.5 37 363614.0 38 379402.5 39 389147.0 40 396623.5 41 406059.5 42 412038.0 43 422132.0 44 457267.0 45 476561.5 46 458962.0 47 439861.5 48 419412.0 49 400538.0 50 388062.5 51 373868.5 52 354696.0 53 333957.0 54 314055.0 55 289665.0 56 261555.0 57 231180.5 58 202850.5 59 178200.5 60 151532.5 61 125032.5 62 97387.0 63 74119.0 64 59606.5 65 45685.0 66 31012.5 67 21466.0 68 15770.5 69 11230.5 70 7955.5 71 5458.0 72 3667.0 73 2541.0 74 1744.0 75 1112.5 76 669.0 77 384.0 78 230.5 79 141.0 80 103.0 81 69.5 82 49.0 83 35.5 84 24.0 85 20.0 86 18.5 87 13.5 88 7.5 89 3.5 90 2.0 91 2.0 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0018906612194939387 4 0.0 5 0.05791240750788357 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 3.3934944965275826E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 9.699684668101282E-6 28-29 9.703955604014954E-6 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 3.451492721294921E-5 40-41 0.0 42-43 0.0 44-45 1.0092003242964322E-5 46-47 2.5996211791239407E-4 48-49 0.0 50-51 4.675027902124862E-5 52-53 1.0479277072400172E-5 54-55 0.0016848142463244905 56-57 0.002332626089623968 58-59 8.434789887234917E-4 60-61 0.0027493108421269255 62-63 0.004647035232573166 64-65 0.0019949430128778822 66-67 0.007270079543387594 68-69 0.004141726485475186 70-71 0.0017144658601681644 72-73 8.067154944278014E-4 74-75 6.62091089906228E-4 76-77 0.0 78-79 0.0 80-81 2.7219339425344093E-4 82-83 0.0 84-85 0.0011259116946220641 86-87 0.001325944735624132 88-89 1.7085664102678007E-4 90-91 7.686383756928874E-4 92-93 3.1127187438779146E-4 94-95 2.6263085336052263E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 175.0 20-21 503.0 22-23 1158.0 24-25 1754.0 26-27 3581.0 28-29 7829.0 30-31 19888.0 32-33 26245.0 34-35 36121.0 36-37 57369.0 38-39 75295.0 40-41 71504.0 42-43 80114.0 44-45 97933.0 46-47 97547.0 48-49 90224.0 50-51 85548.0 52-53 75369.0 54-55 76890.0 56-57 80969.0 58-59 84599.0 60-61 86539.0 62-63 86202.0 64-65 99544.0 66-67 108738.0 68-69 104783.0 70-71 121655.0 72-73 81974.0 74-75 83716.0 76-77 87567.0 78-79 91823.0 80-81 96338.0 82-83 90394.0 84-85 87571.0 86-87 91634.0 88-89 95018.0 90-91 95761.0 92-93 94684.0 94-95 98412.0 96-97 149767.0 98-99 810763.0 100-101 6580354.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 78.99559457053807 #Duplication Level Percentage of deduplicated Percentage of total 1 86.62612024192948 68.43081873850143 2 8.421813969193574 13.305724037178193 3 2.4687659086112346 5.850648924186575 4 1.0369656249307233 3.276628643624483 5 0.5216670496862101 2.06046993789103 6 0.29263849191501395 1.3870290997831274 7 0.17280330771012528 0.9555490025421896 8 0.11837876144461836 0.7481120515873212 9 0.07620510814526556 0.5417881044522666 >10 0.2595674912068877 3.062764437693289 >50 0.003918621040167141 0.20425742154391888 >100 0.0011053055507830125 0.1281850940108992 >500 0.0 0.0 >1k 5.011863591640758E-5 0.04802450700533662 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.695698561507379E-6 2 0.0 9.695698561507379E-6 0.0 9.695698561507379E-6 9.695698561507379E-6 3 0.0 9.695698561507379E-6 0.0 1.9391397123014758E-5 9.695698561507379E-6 4 0.0 1.9391397123014758E-5 0.0 1.9391397123014758E-5 9.695698561507379E-6 5 0.0 1.9391397123014758E-5 0.0 1.9391397123014758E-5 9.695698561507379E-6 6 0.0 1.9391397123014758E-5 0.0 1.9391397123014758E-5 9.695698561507379E-6 7 0.0 1.9391397123014758E-5 0.0 1.9391397123014758E-5 9.695698561507379E-6 8 0.0 1.9391397123014758E-5 0.0 4.847849280753689E-5 3.8782794246029516E-5 9 0.0 6.786988993055165E-5 0.0 1.4543547842261068E-4 3.8782794246029516E-5 10-11 0.0 6.786988993055165E-5 0.0 1.6482687554562545E-4 3.8782794246029516E-5 12-13 0.0 6.786988993055165E-5 0.0 1.8906612194939388E-4 4.36306435267832E-5 14-15 0.0 1.0180483489582747E-4 0.0 2.0360966979165494E-4 7.756558849205903E-5 16-17 0.0 1.1150053345733485E-4 0.0 2.230010669146697E-4 8.726128705356641E-5 18-19 0.0 1.40587629141857E-4 0.0 2.4724031331843817E-4 1.2604408129959592E-4 20-21 0.0 1.6482687554562545E-4 0.0 3.005666554067287E-4 1.5513117698411806E-4 22-23 0.0 1.842182726686402E-4 0.0 3.3450160037200457E-4 1.5513117698411806E-4 24-25 0.0 2.18153217633916E-4 0.0 3.5389299749501933E-4 1.5513117698411806E-4 26-27 0.0 2.4239246403768446E-4 0.0 4.0721933958330994E-4 1.5513117698411806E-4 28-29 0.0 2.4239246403768446E-4 0.0 6.883945978670238E-4 1.745225741071328E-4 30-31 0.0 2.569360118799455E-4 0.0 0.001386484894295555 2.0360966979165494E-4 32-33 0.0 2.617838611606992E-4 0.0 0.0030492971975940707 2.1330536835316232E-4 34-35 0.0 3.2480590181049716E-4 0.0 0.0049399584170880095 2.230010669146697E-4 36-37 0.0 3.878279424602951E-4 0.0 0.008391627104984636 2.230010669146697E-4 38-39 0.0 3.878279424602951E-4 0.0 0.013738804861655955 2.230010669146697E-4 40-41 0.0 4.2661073670632464E-4 0.0 0.019856790653967112 2.278489161954234E-4 42-43 0.0 4.36306435267832E-4 0.0 0.02548029581964139 2.3269676547617708E-4 44-45 0.0 4.896327773561227E-4 0.0 0.031646760104760085 2.4239246403768446E-4 46-47 0.0 5.235677223213984E-4 0.0 0.03800713836110892 2.5208816259919184E-4 48-49 0.0 5.429591194444132E-4 0.0 0.04420268974191214 2.5208816259919184E-4 50-51 0.0 6.253725572172259E-4 0.0 0.05117389700763594 2.617838611606992E-4 52-53 0.0 6.302204064979796E-4 0.0 0.0582759962039401 2.617838611606992E-4 54-55 0.0 6.447639543402408E-4 0.0 0.06501450670418774 2.617838611606992E-4 56-57 0.0 6.593075021825018E-4 0.0 0.07145729839830939 2.7147955972220655E-4 58-59 0.0 6.641553514632555E-4 0.0 0.07742500086291718 2.860231075644677E-4 60-61 0.0 6.786988993055165E-4 0.0 0.08326181139694461 3.005666554067287E-4 62-63 0.0 6.786988993055165E-4 0.0 0.08864777194786197 3.199580525297435E-4 64-65 0.0 7.465687892360682E-4 0.0 0.09425673356569397 3.199580525297435E-4 66-67 0.0 7.465687892360682E-4 0.0 0.09970571615726112 3.199580525297435E-4 68-69 0.0 7.708080356398366E-4 0.0 0.10509652455745924 3.3934944965275824E-4 70-71 0.0 7.853515834820976E-4 0.0 0.11059398564183393 3.684365453372804E-4 72-73 0.0 7.998951313243587E-4 0.0 0.11464193979126325 3.732843946180341E-4 74-75 0.0 8.386779255703883E-4 0.0 0.11826328320398626 3.7813224389878777E-4 76-77 0.0 8.726128705356641E-4 0.0 0.12153073361921424 3.878279424602951E-4 78-79 0.0 8.823085690971715E-4 0.0 0.12447822598191247 4.023714903025562E-4 80-81 0.0 8.823085690971715E-4 0.0 0.12592773291685783 4.2661073670632464E-4 82-83 0.0 8.871564183779251E-4 0.0 0.12636888720140643 4.3630643526783205E-4 84-85 0.0 8.920042676586788E-4 0.0 0.12670338880177842 4.5084998311009314E-4 86-87 0.0 9.0654781550094E-4 0.0 0.12686821567732404 4.750892295138615E-4 88-89 0.0 9.501784590277231E-4 0.0 0.1269360855672546 4.896327773561227E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19400 0.0 52.60492 1 CTTATAC 10600 0.0 39.44261 1 GTATCAA 36055 0.0 36.452824 1 TATACAC 14670 0.0 31.605146 3 TATCAAC 45920 0.0 30.207115 2 TTATACA 14760 0.0 29.825947 2 ATCAACG 46350 0.0 29.779905 3 TCAACGC 46400 0.0 29.756124 4 CAACGCA 47580 0.0 29.0629 5 AACGCAG 49095 0.0 28.245562 6 GGACCGA 3355 0.0 28.15552 6 ACCGAAC 3330 0.0 27.34467 8 CCGAACC 3465 0.0 25.78809 9 GTGGTAT 8525 0.0 25.370518 1 AGGACCG 4115 0.0 25.347996 5 GACCGAA 3635 0.0 25.284388 7 TGGTATC 8890 0.0 24.999355 2 ACGCAGA 56135 0.0 24.680489 7 CGCAGAG 57025 0.0 24.31768 8 TACACAT 21250 0.0 21.637756 5 >>END_MODULE