##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139332_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8582031 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.940280453426467 18.0 18.0 32.0 18.0 33.0 2 27.01228322293406 28.0 25.0 31.0 18.0 33.0 3 29.249872436955773 31.0 27.0 33.0 25.0 33.0 4 29.268777169413628 31.0 29.0 33.0 15.0 33.0 5 31.433953687652725 33.0 32.0 33.0 28.0 33.0 6 35.55155580304942 37.0 36.0 38.0 29.0 38.0 7 36.08978166124079 38.0 36.0 38.0 33.0 38.0 8 36.49373557378201 38.0 37.0 38.0 34.0 38.0 9 36.703399230322056 38.0 38.0 38.0 34.0 38.0 10-11 36.83658075809794 38.0 38.0 38.0 35.0 38.0 12-13 36.90710963407147 38.0 38.0 38.0 35.0 38.0 14-15 36.9300361417944 38.0 38.0 38.0 35.0 38.0 16-17 36.956746835335366 38.0 38.0 38.0 35.0 38.0 18-19 36.97013195361331 38.0 38.0 38.0 35.0 38.0 20-21 36.98178228063907 38.0 38.0 38.0 35.0 38.0 22-23 37.00040553031884 38.0 38.0 38.0 36.0 38.0 24-25 37.0051369223014 38.0 38.0 38.0 36.0 38.0 26-27 36.978062265193884 38.0 38.0 38.0 35.5 38.0 28-29 36.948934214054646 38.0 38.0 38.0 35.0 38.0 30-31 36.93971094805016 38.0 38.0 38.0 35.0 38.0 32-33 36.905300278365274 38.0 38.0 38.0 35.0 38.0 34-35 36.88180348982425 38.0 38.0 38.0 35.0 38.0 36-37 36.8551919460635 38.0 38.0 38.0 35.0 38.0 38-39 36.82679280960749 38.0 38.0 38.0 35.0 38.0 40-41 36.843074419317716 38.0 38.0 38.0 35.0 38.0 42-43 36.7946303968134 38.0 38.0 38.0 35.0 38.0 44-45 36.7582074029654 38.0 38.0 38.0 35.0 38.0 46-47 36.714915542935174 38.0 38.0 38.0 35.0 38.0 48-49 36.67907543286533 38.0 38.0 38.0 34.5 38.0 50-51 36.64643251118071 38.0 38.0 38.0 34.0 38.0 52-53 36.62207311308129 38.0 38.0 38.0 34.0 38.0 54-55 36.611321077717506 38.0 38.0 38.0 34.0 38.0 56-57 36.59700968010772 38.0 38.0 38.0 34.0 38.0 58-59 36.58356546510713 38.0 38.0 38.0 34.0 38.0 60-61 36.58524575597782 38.0 38.0 38.0 34.0 38.0 62-63 36.57524288251996 38.0 38.0 38.0 34.0 38.0 64-65 36.5684049237351 38.0 38.0 38.0 34.0 38.0 66-67 36.539992589228646 38.0 38.0 38.0 34.0 38.0 68-69 36.52549415152903 38.0 38.0 38.0 34.0 38.0 70-71 36.53114713833459 38.0 38.0 38.0 34.0 38.0 72-73 36.511705218698246 38.0 38.0 38.0 34.0 38.0 74-75 36.50642459929087 38.0 38.0 38.0 34.0 38.0 76-77 36.500570037671864 38.0 38.0 38.0 34.0 38.0 78-79 36.489080470794065 38.0 38.0 38.0 34.0 38.0 80-81 36.488668621065145 38.0 38.0 38.0 34.0 38.0 82-83 36.470505255698725 38.0 38.0 38.0 34.0 38.0 84-85 36.46479103945636 38.0 38.0 38.0 34.0 38.0 86-87 36.45271387253026 38.0 38.0 38.0 34.0 38.0 88-89 36.45402336868638 38.0 38.0 38.0 34.0 38.0 90-91 36.460522360619926 38.0 38.0 38.0 34.0 38.0 92-93 36.42924060247005 38.0 38.0 38.0 34.0 38.0 94-95 36.42526710704264 38.0 38.0 38.0 34.0 38.0 96-97 36.426292181159084 38.0 38.0 38.0 34.0 38.0 98-99 36.45572754504907 38.0 38.0 38.0 34.0 38.0 100-101 35.93705870887677 38.0 36.5 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 9.0 18 52.0 19 125.0 20 202.0 21 560.0 22 1627.0 23 4673.0 24 10503.0 25 20054.0 26 34004.0 27 52637.0 28 76186.0 29 102106.0 30 132759.0 31 169209.0 32 215835.0 33 283974.0 34 405339.0 35 671691.0 36 1705674.0 37 4694812.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.458638869983105 25.36858699298569 13.675329301420607 23.497444835610594 2 15.339107957079158 21.0490733487213 41.38351399569636 22.228304698503187 3 18.119084399273213 27.412486076741143 29.67626027122549 24.79216925276015 4 13.437098980416174 18.993545933357733 37.23594100277662 30.33341408344948 5 13.857167007689034 37.357712060532926 35.23011723008225 13.555003701695783 6 29.89890155372312 37.83499500293112 18.331045413375925 13.935058029969829 7 26.365413967859126 33.05081279711061 22.545106164263448 18.038667070766813 8 24.234880997283742 37.227900947922464 20.702803334082574 17.834414720711216 9 25.225462364328443 17.374197319958412 21.10486433805704 36.2954759776561 10-11 24.42199288257057 27.008921314779684 28.16150978713547 20.407576015514277 12-13 25.3053443875931 24.367699207798246 28.56837734564231 21.758579058966347 14-15 22.467457575295725 25.709523436651573 26.16519079173361 25.657828196319098 16-17 21.788338914180105 29.06462934007113 26.890563550749235 22.256468194999528 18-19 21.85520537038377 27.758720517322764 28.960836892805442 21.42523721948802 20-21 22.5979477353782 26.793371922755206 28.989456920626594 21.619223421240005 22-23 22.406835050346253 26.908795261606024 28.860086141388546 21.82428354665918 24-25 22.17871459382946 27.16236228028272 28.913014875285274 21.74590825060254 26-27 22.120380937017785 27.201182668477635 28.992558028183428 21.685878366321152 28-29 21.945454684303144 27.02971837524011 29.09466309068281 21.930163849773933 30-31 22.228672734309647 27.21883711327119 28.80806671443585 21.744423437983315 32-33 22.30989851745248 27.050022195819544 28.862331167003425 21.77774811972455 34-35 22.133198116529393 27.035693453324 28.97987810694679 21.85123032319982 36-37 22.03190383636089 27.188765226782923 28.901677698498357 21.877653238357826 38-39 21.958513905935177 27.02287656360967 29.03195374980002 21.98665578065513 40-41 22.1622025600083 26.8875488907994 29.01236088579334 21.937887663398957 42-43 22.206723787082623 26.947657023437642 28.747142347508692 22.098476841971042 44-45 22.05811152275513 27.109920011885354 28.654432497392268 22.177535967967252 46-47 22.421798214702985 27.037281907984156 28.271823257037465 22.26909662027539 48-49 22.222598096872016 27.183549130840078 28.156906389341195 22.436946382946708 50-51 22.104357246257415 27.28489934027226 28.27381748629383 22.336925927176495 52-53 22.312216797069066 27.174418739265505 28.33557513244176 22.177789331223664 54-55 22.22783591004928 27.202201684488532 28.119856860099617 22.45010554536257 56-57 22.389340586431402 27.450871499417257 27.914035878061057 22.245752036090288 58-59 22.125288886944926 27.76834029156565 28.06917333267261 22.03719748881681 60-61 22.363524114451604 27.93817480718157 27.761503923238696 21.93679715512813 62-63 22.102460084271794 28.18599029368472 27.723471326563757 21.98807829547972 64-65 22.166201055643604 28.113996371447357 27.652245235641594 22.067557337267445 66-67 22.212230902367132 27.979974584883717 27.614434089533635 22.19336042321552 68-69 22.152249624402906 27.780830716034753 27.775742119414993 22.29117754014735 70-71 22.272635675826912 27.494644912125267 27.871504537377362 22.36121487467046 72-73 22.3531735664887 27.431159829571207 27.787624825486358 22.42804177845374 74-75 22.140269505712666 27.566405846226722 27.874821653025162 22.41850299503545 76-77 22.44386878173464 27.42408995222328 27.782394844426054 22.349646421616026 78-79 22.28603404870476 27.4726465448338 27.72781409844214 22.5135053080193 80-81 22.38183632381315 27.497091637557496 27.70982115922332 22.411250879406037 82-83 22.358479279245316 27.469315786508503 27.787483630385406 22.384721303860772 84-85 22.3932633582598 27.483734525537358 27.75365277990035 22.369349336302484 86-87 22.366654150251858 27.484492219368118 27.78811737287689 22.360736257503135 88-89 22.375066976142385 27.52602610054662 27.662481625421808 22.43642529788919 90-91 22.451247255371534 27.45789254930317 27.712717751976957 22.378142443348338 92-93 22.454690109995962 27.4119802205681 27.713335781348647 22.41999388808729 94-95 22.364325651581314 27.488708641213318 27.726114209382423 22.420851497822948 96-97 22.455513279658046 27.50955287779381 27.653239886280463 22.38169395626768 98-99 22.663343287273584 28.128790062818382 27.712954902934676 21.49491174697336 100-101 23.337443012577943 30.554228896380646 25.06393340463024 21.044394686411174 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 2284.0 1 2270.0 2 2783.0 3 3475.5 4 4388.0 5 6076.5 6 7549.5 7 9609.0 8 11729.0 9 12677.5 10 12513.0 11 12194.0 12 13304.5 13 16535.5 14 23793.5 15 32617.5 16 38761.0 17 41522.0 18 40967.0 19 37689.5 20 33290.0 21 29330.5 22 27653.5 23 29726.5 24 35731.5 25 46010.0 26 59170.5 27 74039.0 28 92395.5 29 113129.5 30 133192.5 31 154775.0 32 176852.5 33 197886.5 34 216749.5 35 232947.5 36 251262.5 37 270231.5 38 285820.5 39 296661.5 40 305824.0 41 317262.5 42 327550.0 43 340025.5 44 362605.5 45 374354.5 46 366132.5 47 354699.5 48 345437.5 49 337382.5 50 330246.5 51 323560.0 52 313316.0 53 299904.5 54 285496.5 55 269196.0 56 249747.0 57 226628.5 58 202074.5 59 175641.0 60 147455.5 61 120940.0 62 95960.0 63 74052.0 64 56145.0 65 41667.0 66 30525.5 67 23208.0 68 17889.0 69 12985.5 70 9225.5 71 6366.5 72 4303.5 73 2826.0 74 1789.5 75 1123.5 76 719.5 77 419.0 78 251.5 79 158.5 80 103.5 81 71.5 82 48.5 83 31.0 84 18.0 85 9.5 86 8.0 87 8.0 88 5.5 89 3.5 90 2.5 91 2.0 92 1.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0019575785731839003 4 0.0 5 0.056874648903039386 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 3.495676023542679E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 1.7483368217509416E-5 28-29 1.7488561023710408E-5 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 4.132432171881786E-5 40-41 0.0 42-43 0.0 44-45 0.0 46-47 2.5445152338006617E-4 48-49 0.0 50-51 4.3052310402237734E-5 52-53 1.8572456601121578E-5 54-55 0.0018693480262426555 56-57 0.0022652867953483436 58-59 7.331941781348348E-4 60-61 0.002725679582609298 62-63 0.004401326839643944 64-65 0.00221114280200283 66-67 0.007203149498823258 68-69 0.004231529521938009 70-71 0.0017453068399307817 72-73 6.862423809435066E-4 74-75 6.646848207012696E-4 76-77 0.0 78-79 0.0 80-81 2.368764853549023E-4 82-83 0.0 84-85 9.937458604274002E-4 86-87 0.0010316801017924368 88-89 1.4469575041603646E-4 90-91 4.678218259641406E-4 92-93 2.216062062147688E-4 94-95 1.4930226572160323E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 94.0 20-21 318.0 22-23 689.0 24-25 1003.0 26-27 1978.0 28-29 4624.0 30-31 12721.0 32-33 16914.0 34-35 23992.0 36-37 38589.0 38-39 46687.0 40-41 46204.0 42-43 53169.0 44-45 64967.0 46-47 66261.0 48-49 60396.0 50-51 54346.0 52-53 51293.0 54-55 55452.0 56-57 57239.0 58-59 58806.0 60-61 58607.0 62-63 58302.0 64-65 69226.0 66-67 76295.0 68-69 73454.0 70-71 83433.0 72-73 60104.0 74-75 61299.0 76-77 64119.0 78-79 67429.0 80-81 68576.0 82-83 65341.0 84-85 64686.0 86-87 67042.0 88-89 70125.0 90-91 71846.0 92-93 70677.0 94-95 75068.0 96-97 123564.0 98-99 716832.0 100-101 5800264.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.43068910696648 #Duplication Level Percentage of deduplicated Percentage of total 1 88.10479928232013 72.62539318472615 2 7.978867570647728 13.154071042834396 3 2.087012103814173 5.1610153767594635 4 0.8070428919953863 2.661004069042352 5 0.39555496492690656 1.6302934169303434 6 0.21639839039317676 1.0702721065048748 7 0.12346785179261875 0.712427807407566 8 0.07733608916703849 0.5099893698301431 9 0.050888173064008835 0.3775272455754736 >10 0.15572319113602415 1.9062537997388909 >50 0.0025671894723855596 0.1382692759147297 >100 3.17380699889308E-4 0.04089093736213859 >500 2.4920570507997264E-5 0.012592367373466447 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.165225341180893E-5 2 0.0 1.165225341180893E-5 0.0 2.330450682361786E-5 1.165225341180893E-5 3 0.0 1.165225341180893E-5 0.0 3.495676023542679E-5 1.165225341180893E-5 4 0.0 4.660901364723572E-5 0.0 3.495676023542679E-5 1.165225341180893E-5 5 1.165225341180893E-5 4.660901364723572E-5 0.0 5.826126705904465E-5 1.165225341180893E-5 6 1.165225341180893E-5 5.826126705904465E-5 0.0 5.826126705904465E-5 3.495676023542679E-5 7 1.165225341180893E-5 5.826126705904465E-5 0.0 6.991352047085358E-5 3.495676023542679E-5 8 1.165225341180893E-5 8.156577388266251E-5 0.0 8.156577388266251E-5 3.495676023542679E-5 9 1.165225341180893E-5 1.3982704094170717E-4 0.0 1.165225341180893E-4 5.826126705904465E-5 10-11 2.330450682361786E-5 1.3982704094170717E-4 0.0 1.5730542105942056E-4 5.826126705904465E-5 12-13 3.495676023542679E-5 1.3982704094170717E-4 0.0 1.7478380117713394E-4 5.826126705904465E-5 14-15 4.0782886941331256E-5 1.8643605458894285E-4 0.0 1.8643605458894285E-4 1.2234866082399377E-4 16-17 5.2435140353140184E-5 1.980883080007518E-4 0.0 2.0391443470665628E-4 1.7478380117713394E-4 18-19 5.826126705904465E-5 2.2139281482436965E-4 0.0 2.2139281482436965E-4 2.0391443470665628E-4 20-21 5.826126705904465E-5 2.4469732164798753E-4 0.0 2.4469732164798753E-4 2.3887119494208308E-4 22-23 5.826126705904465E-5 2.854802085893188E-4 0.0 2.5634957505979645E-4 2.621757017657009E-4 24-25 8.739190058856697E-5 2.971324620011277E-4 0.0 2.854802085893188E-4 2.971324620011277E-4 26-27 9.321802729447144E-5 3.0295858870703216E-4 0.0 3.2626309553065004E-4 3.087847154129366E-4 28-29 9.321802729447144E-5 3.0295858870703216E-4 0.0 4.719162631782617E-4 3.320892222365545E-4 30-31 1.1069640741218482E-4 3.495676023542679E-4 0.0 0.0010953118207100393 3.495676023542679E-4 32-33 1.2817478752989822E-4 3.5539372906017233E-4 0.0 0.002406190329538544 3.670459824719813E-4 34-35 1.3982704094170714E-4 4.020027427074081E-4 0.0 0.004299681508957495 3.7287210917788576E-4 36-37 1.5147929435351608E-4 4.5443788306054827E-4 0.0 0.0071311790880270644 3.7287210917788576E-4 38-39 1.5147929435351608E-4 4.602640097664527E-4 0.0 0.012007647140869101 3.786982358837902E-4 40-41 1.6313154776532502E-4 5.243514035314018E-4 0.0 0.017140464768770937 3.8452436258969467E-4 42-43 1.6313154776532502E-4 5.301775302373063E-4 0.0 0.021830496767024032 3.9035048929559913E-4 44-45 1.6313154776532502E-4 6.000910507081599E-4 0.0 0.0272720991103388 4.020027427074081E-4 46-47 1.6313154776532502E-4 6.64178444473109E-4 0.0 0.033966318695423034 4.3695950294283484E-4 48-49 1.6313154776532502E-4 6.700045711790135E-4 0.0 0.039786619274621585 4.660901364723572E-4 50-51 1.6313154776532502E-4 7.340919649439626E-4 0.0 0.045286482884995406 4.7191626317826164E-4 52-53 1.6313154776532502E-4 7.340919649439626E-4 0.0 0.05121165374490025 5.01046896707784E-4 54-55 1.6313154776532502E-4 7.399180916498671E-4 0.0 0.05735239129292355 5.301775302373063E-4 56-57 1.6313154776532502E-4 7.573964717675804E-4 0.0 0.06255512244129624 5.476559103550196E-4 58-59 1.6313154776532502E-4 7.632225984734849E-4 0.0 0.06739080760719694 5.593081637668287E-4 60-61 1.6313154776532502E-4 8.098316121207207E-4 0.0 0.07197596932474376 5.651342904727331E-4 62-63 1.6313154776532502E-4 8.506144990620519E-4 0.0 0.07656113104229056 5.942649240022554E-4 64-65 1.6313154776532502E-4 9.321802729447144E-4 0.0 0.08069768100348274 5.942649240022554E-4 66-67 1.6313154776532502E-4 9.554847797683322E-4 0.0 0.0852012769471469 6.000910507081599E-4 68-69 1.7478380117713394E-4 9.787892865919501E-4 0.0 0.08969904676410514 6.117433041199688E-4 70-71 1.7478380117713394E-4 9.787892865919501E-4 0.0 0.09429003460835786 6.408739376494912E-4 72-73 1.7478380117713394E-4 9.787892865919501E-4 0.0 0.09822267013484337 6.874829512967268E-4 74-75 1.7478380117713394E-4 9.962676667096635E-4 0.0 0.10124060376850189 6.874829512967268E-4 76-77 1.7478380117713394E-4 0.0010428766803568992 0.0 0.10392644817992384 6.933090780026313E-4 78-79 1.7478380117713394E-4 0.0010720073138864215 0.0 0.10670551061864028 6.991352047085357E-4 80-81 1.7478380117713394E-4 0.0010720073138864215 0.0 0.10776003955240898 7.049613314144402E-4 82-83 1.806099278830384E-4 0.0010720073138864215 0.0 0.10836595672982305 7.107874581203447E-4 84-85 1.8643605458894288E-4 0.001077833440592326 0.0 0.10873300271229502 7.224397115321536E-4 86-87 1.8643605458894288E-4 0.0010953118207100393 0.0 0.10883787299300131 7.51570345061676E-4 88-89 1.8643605458894288E-4 0.001165225341180893 0.0 0.10889030813335444 7.690487251793893E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 13515 0.0 52.721027 1 GTATCAA 24020 0.0 35.46996 1 CTTATAC 7260 0.0 35.008648 1 TCAACGC 30175 0.0 29.861212 4 TATCAAC 30310 0.0 29.800575 2 ATCAACG 30595 0.0 29.466173 3 TATACAC 9915 0.0 29.31497 3 CAACGCA 31165 0.0 28.884748 5 AACGCAG 32110 0.0 28.102251 6 TTATACA 10415 0.0 26.197294 2 TGGTATC 5990 0.0 25.676304 2 GTGGTAT 6145 0.0 24.39233 1 ACGCAGA 37605 0.0 23.984287 7 CGCAGAG 38450 0.0 23.479782 8 GAGTACT 24295 0.0 21.16268 12-13 GCAGAGT 44110 0.0 20.42758 9 TACACAT 13985 0.0 20.410276 5 ACACATC 13550 0.0 19.709324 6 TACATGG 30520 0.0 19.431404 2 GTACATG 29455 0.0 19.352224 1 >>END_MODULE