##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139331_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10054768 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.505909932481785 32.0 28.0 33.0 18.0 34.0 2 31.34033286496516 33.0 31.0 33.0 27.0 34.0 3 31.688463125156144 33.0 31.0 33.0 29.0 34.0 4 32.15043887636194 33.0 33.0 34.0 30.0 34.0 5 32.400984885976484 33.0 33.0 34.0 31.0 34.0 6 35.80361864142465 38.0 36.0 38.0 31.0 38.0 7 36.13927631149719 38.0 37.0 38.0 33.0 38.0 8 36.3309815800822 38.0 37.0 38.0 33.0 38.0 9 36.734182230758584 38.0 38.0 38.0 34.0 38.0 10-11 36.81032675244222 38.0 38.0 38.0 35.0 38.0 12-13 36.87689248523685 38.0 38.0 38.0 35.0 38.0 14-15 36.87353487420097 38.0 38.0 38.0 35.0 38.0 16-17 36.88460653691861 38.0 38.0 38.0 35.0 38.0 18-19 36.910187932730025 38.0 38.0 38.0 35.0 38.0 20-21 36.925362914267794 38.0 38.0 38.0 35.0 38.0 22-23 36.94765850561153 38.0 38.0 38.0 35.0 38.0 24-25 36.938770781920255 38.0 38.0 38.0 35.0 38.0 26-27 36.91942725913188 38.0 38.0 38.0 35.0 38.0 28-29 36.89965556901576 38.0 38.0 38.0 35.0 38.0 30-31 36.893825024889765 38.0 38.0 38.0 35.0 38.0 32-33 36.86886166438753 38.0 38.0 38.0 35.0 38.0 34-35 36.845219472506585 38.0 38.0 38.0 35.0 38.0 36-37 36.81975075965693 38.0 38.0 38.0 35.0 38.0 38-39 36.795960359263646 38.0 38.0 38.0 35.0 38.0 40-41 36.79433003579972 38.0 38.0 38.0 35.0 38.0 42-43 36.74918037689487 38.0 38.0 38.0 35.0 38.0 44-45 36.71069801233965 38.0 38.0 38.0 35.0 38.0 46-47 36.66404291496822 38.0 38.0 38.0 34.0 38.0 48-49 36.628365552825876 38.0 38.0 38.0 34.0 38.0 50-51 36.59609133308251 38.0 38.0 38.0 34.0 38.0 52-53 36.56563845380474 38.0 38.0 38.0 34.0 38.0 54-55 36.54896804846571 38.0 38.0 38.0 34.0 38.0 56-57 36.529398987522285 38.0 38.0 38.0 34.0 38.0 58-59 36.51380211955042 38.0 38.0 38.0 34.0 38.0 60-61 36.51129051484261 38.0 38.0 38.0 34.0 38.0 62-63 36.495150764972124 38.0 38.0 38.0 34.0 38.0 64-65 36.48266069164282 38.0 38.0 38.0 34.0 38.0 66-67 36.45589979367263 38.0 38.0 38.0 34.0 38.0 68-69 36.44423892625127 38.0 38.0 38.0 34.0 38.0 70-71 36.44662702134919 38.0 38.0 38.0 34.0 38.0 72-73 36.42827828988751 38.0 38.0 38.0 34.0 38.0 74-75 36.41538440177622 38.0 38.0 38.0 34.0 38.0 76-77 36.40110553931092 38.0 38.0 38.0 34.0 38.0 78-79 36.38516886604605 38.0 38.0 38.0 34.0 38.0 80-81 36.383040249747495 38.0 38.0 38.0 34.0 38.0 82-83 36.36128397269009 38.0 38.0 38.0 34.0 38.0 84-85 36.348373591224146 38.0 38.0 38.0 34.0 38.0 86-87 36.33353452981271 38.0 38.0 38.0 33.5 38.0 88-89 36.33347409649576 38.0 38.0 38.0 33.5 38.0 90-91 36.34186241780606 38.0 38.0 38.0 34.0 38.0 92-93 36.31345602504297 38.0 37.0 38.0 33.0 38.0 94-95 36.30081953948661 38.0 37.0 38.0 33.0 38.0 96-97 36.2904912714244 38.0 37.0 38.0 33.0 38.0 98-99 36.318801312120684 38.0 37.0 38.0 33.0 38.0 100-101 35.76762356769426 38.0 36.0 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 8.0 19 23.0 20 76.0 21 400.0 22 1737.0 23 5386.0 24 12714.0 25 24267.0 26 40739.0 27 62151.0 28 89393.0 29 120726.0 30 155536.0 31 197050.0 32 250345.0 33 326928.0 34 452936.0 35 702147.0 36 1500153.0 37 6112052.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.64289379924032 20.366447042835798 16.017206960916454 23.97345219700743 2 14.20419645684515 21.607460261639055 41.78313214188532 22.40521113963047 3 17.649421227896354 26.390418598045347 31.19843509841602 24.76172507564228 4 12.43890460724703 18.75354060879376 38.2226919606698 30.58486282328941 5 13.406623392015735 37.2693502204583 35.52923875086465 13.79478763666131 6 29.45252441428783 38.37037314038474 18.624179095927424 13.552923349400006 7 26.04713505075403 32.99239723880253 22.892502343166942 18.0679653672765 8 24.147876907751627 37.00731831903033 20.942034664549197 17.902770108668843 9 25.114393489735416 17.243938398180845 21.300451686204994 36.34121642587875 10-11 24.025074472131035 27.091888146996528 28.676385173680785 20.206652207191652 12-13 24.948427452527994 24.533301016990148 28.919130704955105 21.599140825526757 14-15 22.013047745327487 25.90455131517756 26.743646096517033 25.338754842977917 16-17 21.41460648321274 29.123307469650218 27.403252864710552 22.058833182426486 18-19 21.434054967752616 27.964762588256637 29.472902805912575 21.128279638078173 20-21 22.320065160552442 27.00395974976303 29.45432811286075 21.221646976823774 22-23 21.979182922859188 27.044067945638 29.331373290321 21.64537584118181 24-25 21.73520114743149 27.22980715604797 29.417659222059793 21.617332474460753 26-27 21.676413181663246 27.397813814468723 29.361889637307865 21.563883366560162 28-29 21.57700711672776 27.330826250137406 29.38569660783393 21.706470025300902 30-31 21.96489493753111 27.231421328984624 29.315776319507926 21.48790741397634 32-33 21.74272090864435 27.3385135787476 29.31951712801486 21.59924838459318 34-35 21.822329240908882 27.357735434441988 29.34253428625845 21.47740103839069 36-37 21.824208519863046 27.231773004140646 29.329203710998776 21.61481476499753 38-39 21.59044753156411 27.301261283059258 29.444227145471963 21.66406403990467 40-41 21.85902930652692 27.170274176423604 29.31277213087608 21.657924386173395 42-43 21.84901185556905 27.250113016759148 29.138892684328333 21.761982443343474 44-45 21.792559718041737 27.408337807008877 28.992759277731295 21.80634319721809 46-47 21.975744235009532 27.33672600471519 28.634740631423867 22.052789128851416 48-49 21.834549160238602 27.470782595031544 28.655323200545073 22.039345044184778 50-51 21.811129017399825 27.600568022100212 28.606615621366217 21.98168733913375 52-53 21.966359284319843 27.52251143622165 28.553636742613648 21.957492536844864 54-55 21.917593357191425 27.508337853178322 28.461104988291808 22.11296380133844 56-57 21.98634462490544 27.67959480180781 28.316174693844303 22.01788587944245 58-59 21.84373853126748 27.766291423310186 28.48805157924734 21.901918466174994 60-61 22.002652302934 27.816054284963336 28.340423954047107 21.840869458055554 62-63 21.844754421399635 28.01074716883578 28.29096735730748 21.853531052457104 64-65 21.832553617670772 27.958487458504656 28.241939868988275 21.9670190548363 66-67 21.905954353158382 28.00019061510018 28.076604253442998 22.017250778298436 68-69 21.867294530879846 27.89569999931203 28.23473923082536 22.002266238982763 70-71 21.89904599260912 27.591185869498425 28.280161782194313 22.229606355698145 72-73 21.94833054966557 27.56944781035481 28.265580360661918 22.216641279317702 74-75 21.859930678293495 27.652197721213277 28.242611593069128 22.245260007424093 76-77 22.073943830858518 27.583471668006144 28.1433147210319 22.19926978010344 78-79 22.072728273196205 27.657698486058635 28.012827385745908 22.256745854999245 80-81 22.0680891628043 27.695196772869497 28.0064158683346 22.2302981959916 82-83 22.068641362580276 27.6640011087443 28.06448200611435 22.202875522561076 84-85 22.168829541267833 27.678455843553913 28.056489395672646 22.09622521950561 86-87 22.041306347401722 27.6989373183318 28.07560379333412 22.184152540932356 88-89 22.09988118813354 27.74002002327391 28.022231524513014 22.137867264079535 90-91 22.14217229538141 27.756204107745948 28.01955713888696 22.08206645798568 92-93 22.196162804596366 27.749428501262337 27.982183314257508 22.07222537988379 94-95 22.145014550435757 27.78274722243552 27.98722633194975 22.085011895178965 96-97 22.13538148508297 27.791086809310283 28.032815603106886 22.040716102499857 98-99 22.387322188678613 28.35599561795967 28.07832144440077 21.17836074896094 100-101 22.922484968097915 30.885166668084175 25.462752202244342 20.729596161573568 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3439.0 1 3219.5 2 3417.0 3 4056.5 4 5056.5 5 7148.5 6 9136.5 7 12271.5 8 15476.5 9 16494.0 10 15774.5 11 14781.5 12 15901.5 13 19951.5 14 28650.5 15 39246.0 16 46808.0 17 50231.0 18 49332.0 19 45339.5 20 40584.5 21 36399.0 22 35040.5 23 38754.0 24 47592.0 25 61259.5 26 78662.0 27 98842.0 28 121291.0 29 144251.0 30 166735.0 31 190429.5 32 215620.5 33 241417.0 34 265382.0 35 285560.5 36 308719.5 37 330823.0 38 347047.5 39 360068.5 40 373391.0 41 386455.0 42 393877.5 43 400984.5 44 409922.0 45 421971.0 46 426604.5 47 421052.0 48 414815.5 49 404499.5 50 392930.0 51 380515.0 52 363478.5 53 342142.5 54 320834.5 55 297916.5 56 272106.0 57 245432.0 58 218098.5 59 189239.5 60 157322.5 61 126349.0 62 98715.0 63 75481.0 64 56660.5 65 41742.0 66 30572.0 67 22965.0 68 17354.5 69 12726.0 70 9244.5 71 6519.5 72 4484.5 73 3004.5 74 1929.0 75 1242.5 76 788.5 77 485.5 78 321.0 79 219.0 80 137.0 81 78.0 82 47.0 83 30.0 84 21.5 85 20.5 86 19.0 87 12.0 88 5.0 89 1.5 90 0.5 91 0.5 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0020487792458264574 4 0.0 5 0.058967049264587706 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 3.978212127818364E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.974572720268981E-6 28-29 4.976280063449561E-6 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 2.5224948523447548E-5 40-41 0.0 42-43 0.0 44-45 1.0282340737852546E-5 46-47 2.0738824780572866E-4 48-49 0.0 50-51 8.954014184633246E-5 52-53 4.2424611068400726E-5 54-55 0.001814487153617738 56-57 0.002568370092458637 58-59 7.141910685104555E-4 60-61 0.0027481988936972675 62-63 0.004627164312143449 64-65 0.002231902537966711 66-67 0.007340265433829797 68-69 0.004308081995656957 70-71 0.0017939534542545288 72-73 7.129450408491636E-4 74-75 6.957866523303692E-4 76-77 0.0 78-79 0.0 80-81 1.967322416959321E-4 82-83 0.0 84-85 0.0010331999978606683 86-87 0.0011475183289973096 88-89 9.918025658304303E-5 90-91 4.636034341236435E-4 92-93 2.2803522003973512E-4 94-95 1.9213142404225046E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 131.0 20-21 523.0 22-23 1143.0 24-25 1346.0 26-27 2779.0 28-29 6038.0 30-31 16769.0 32-33 22243.0 34-35 30318.0 36-37 48118.0 38-39 55689.0 40-41 58036.0 42-43 66734.0 44-45 80354.0 46-47 80729.0 48-49 73835.0 50-51 67170.0 52-53 58456.0 54-55 62705.0 56-57 62857.0 58-59 70603.0 60-61 72385.0 62-63 69552.0 64-65 76141.0 66-67 82734.0 68-69 82788.0 70-71 89904.0 72-73 73277.0 74-75 73880.0 76-77 78491.0 78-79 81201.0 80-81 82716.0 82-83 79040.0 84-85 78066.0 86-87 80894.0 88-89 84523.0 90-91 87758.0 92-93 85792.0 94-95 91859.0 96-97 149025.0 98-99 843653.0 100-101 6744513.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.13680939370762 #Duplication Level Percentage of deduplicated Percentage of total 1 88.29172222498866 73.4029208166106 2 8.075940012360764 13.42815770965307 3 2.009032302192495 5.010736067195373 4 0.7545458200540147 2.5092212808259773 5 0.3376416442362044 1.403522451012168 6 0.18102584795042068 0.9029946849833054 7 0.10014249903208929 0.582786949796825 8 0.07000201012174896 0.46557950181345875 9 0.041741501525824606 0.31232297305436724 >10 0.1349058699301572 1.7164531465214434 >50 0.0027224234958584123 0.15163277006852313 >100 5.161035813968895E-4 0.06922162410310395 >500 4.116143883748892E-5 0.025681670647374928 >1k 2.0579091534762714E-5 0.01876835371432089 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 9.94553031954591E-6 0.0 3 0.0 9.94553031954591E-6 0.0 1.989106063909182E-5 0.0 4 0.0 4.9727651597729556E-5 0.0 2.983659095863773E-5 0.0 5 0.0 4.9727651597729556E-5 0.0 2.983659095863773E-5 0.0 6 0.0 4.9727651597729556E-5 0.0 3.978212127818364E-5 0.0 7 0.0 4.9727651597729556E-5 0.0 6.961871223682137E-5 9.94553031954591E-6 8 0.0 7.956424255636728E-5 0.0 6.961871223682137E-5 1.989106063909182E-5 9 0.0 1.3923742447364274E-4 0.0 9.945530319545911E-5 1.989106063909182E-5 10-11 9.94553031954591E-6 1.3923742447364274E-4 0.0 1.1437359867477798E-4 1.989106063909182E-5 12-13 9.94553031954591E-6 1.3923742447364274E-4 0.0 1.2929189415409684E-4 1.989106063909182E-5 14-15 9.94553031954591E-6 1.9393784123114527E-4 0.0 1.3923742447364274E-4 1.989106063909182E-5 16-17 9.94553031954591E-6 1.9891060639091822E-4 0.0 1.3923742447364274E-4 1.989106063909182E-5 18-19 9.94553031954591E-6 2.486382579886478E-4 0.0 1.5415571995296162E-4 4.475488643795659E-5 20-21 9.94553031954591E-6 2.8842037926683143E-4 0.0 1.5912848511273457E-4 6.961871223682137E-5 22-23 9.94553031954591E-6 3.4312079602433394E-4 0.0 1.8399231091159937E-4 6.961871223682137E-5 24-25 9.94553031954591E-6 3.6798462182319875E-4 0.0 2.3869272766910188E-4 6.961871223682137E-5 26-27 9.94553031954591E-6 3.8787568246229055E-4 0.0 3.1328420506569624E-4 6.961871223682137E-5 28-29 9.94553031954591E-6 3.8787568246229055E-4 0.0 7.558603042854893E-4 7.459147739659433E-5 30-31 9.94553031954591E-6 4.674399250186578E-4 0.0 0.0019244601168321338 7.956424255636728E-5 32-33 9.94553031954591E-6 4.7241269017843075E-4 0.0 0.004555052886352027 7.956424255636728E-5 34-35 9.94553031954591E-6 5.420314024152522E-4 0.0 0.00817522592266674 8.95097728759132E-5 36-37 9.94553031954591E-6 6.066773494923006E-4 0.0 0.013918769682204502 8.95097728759132E-5 38-39 9.94553031954591E-6 6.265684101313924E-4 0.0 0.023735008107596316 8.95097728759132E-5 40-41 9.94553031954591E-6 7.160781830073056E-4 0.0 0.05502861925804753 8.95097728759132E-5 42-43 9.94553031954591E-6 7.558603042854893E-4 0.0 0.06541672567681323 8.95097728759132E-5 44-45 9.94553031954591E-6 8.90124963599359E-4 0.0 0.07960899744280525 8.95097728759132E-5 46-47 9.94553031954591E-6 9.84607501635045E-4 0.0 0.09559643743147529 8.95097728759132E-5 48-49 9.94553031954591E-6 9.84607501635045E-4 0.0 0.1112606476847601 8.95097728759132E-5 50-51 9.94553031954591E-6 0.001014444092593683 0.0 0.12614910657312034 8.95097728759132E-5 52-53 9.94553031954591E-6 0.001014444092593683 0.0 0.15304679332233226 8.95097728759132E-5 54-55 9.94553031954591E-6 0.001019416857753456 0.0 0.21725016430016086 8.95097728759132E-5 56-57 9.94553031954591E-6 0.0010343351532327747 0.0 0.28854469839582575 9.448253803568616E-5 58-59 9.94553031954591E-6 0.0010343351532327747 0.0 0.36696520496544527 9.945530319545911E-5 60-61 9.94553031954591E-6 0.0010442806835523207 0.0 0.3862843976111632 9.945530319545911E-5 62-63 9.94553031954591E-6 0.0010641717441914125 0.0 0.3988654934653888 9.945530319545911E-5 64-65 9.94553031954591E-6 0.0011934636383455093 0.0 0.40908949863388194 9.945530319545911E-5 66-67 9.94553031954591E-6 0.0011934636383455093 0.0 0.41555409334158677 9.945530319545911E-5 68-69 9.94553031954591E-6 0.00122827299446392 0.0 0.4220534974054101 9.945530319545911E-5 70-71 9.94553031954591E-6 0.001233245759623693 0.0 0.42821972620352855 9.945530319545911E-5 72-73 1.4918295479318866E-5 0.001238218524783466 0.0 0.43234712128614006 9.945530319545911E-5 74-75 1.989106063909182E-5 0.0012630823505823308 0.0 0.4356739011780282 1.0442806835523206E-4 76-77 1.989106063909182E-5 0.001337673827978925 0.0 0.4386724785693713 1.0940083351500503E-4 78-79 1.989106063909182E-5 0.0013625376537777898 0.0 0.4416511649000753 1.0940083351500503E-4 80-81 1.989106063909182E-5 0.0013675104189375628 0.0 0.4427600915307046 1.1437359867477798E-4 82-83 1.989106063909182E-5 0.0013774559492571088 0.0 0.4431976948647647 1.1934636383455093E-4 84-85 1.989106063909182E-5 0.0013874014795766546 0.0 0.44354081566078896 1.1934636383455093E-4 86-87 1.989106063909182E-5 0.0013973470098962004 0.0 0.44371486244138103 1.1934636383455093E-4 88-89 1.989106063909182E-5 0.0014222108356950654 0.0 0.44378945391877767 1.1934636383455093E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14735 0.0 51.950386 1 GTATCAA 27065 0.0 38.19694 1 TCAACGC 34190 0.0 30.046448 4 ATCAACG 34235 0.0 29.994589 3 TATCAAC 35350 0.0 29.404106 2 CAACGCA 35315 0.0 29.101557 5 AACGCAG 36190 0.0 28.393671 6 ACGCAGA 41360 0.0 24.802567 7 CGCAGAG 41815 0.0 24.532682 8 TGGTATC 6610 0.0 24.066494 2 GTGGTAT 7095 0.0 23.643227 1 GCAGAGT 48080 0.0 21.335985 9 GAGTACT 28840 0.0 20.000523 12-13 GTACATG 33080 0.0 19.851591 1 TACATGG 33155 0.0 19.71517 2 AGAGTAC 43915 0.0 19.477793 10-11 CAGAGTA 47155 0.0 18.957111 10-11 ACATGGG 33645 0.0 18.861176 3 AGTACTT 30940 0.0 18.068958 12-13 GTACTTT 31895 0.0 18.037634 14-15 >>END_MODULE