Basic Statistics
Measure | Value |
---|---|
Filename | SRR2139330_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10628103 |
Sequences flagged as poor quality | 0 |
Sequence length | 19-101 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 15395 | 0.0 | 53.181625 | 1 |
GTATCAA | 28405 | 0.0 | 37.98693 | 1 |
TCAACGC | 35335 | 0.0 | 30.400753 | 4 |
ATCAACG | 35495 | 0.0 | 30.215235 | 3 |
TATCAAC | 36570 | 0.0 | 29.48177 | 2 |
CAACGCA | 36540 | 0.0 | 29.410124 | 5 |
AACGCAG | 37765 | 0.0 | 28.484404 | 6 |
TGGTATC | 6805 | 0.0 | 25.584936 | 2 |
ACGCAGA | 42895 | 0.0 | 25.07783 | 7 |
GTGGTAT | 7350 | 0.0 | 24.812996 | 1 |
CGCAGAG | 43325 | 0.0 | 24.79893 | 8 |
GCAGAGT | 49895 | 0.0 | 21.568363 | 9 |
GAGTACT | 29235 | 0.0 | 20.465956 | 12-13 |
GTACATG | 33535 | 0.0 | 19.988256 | 1 |
CAGAGTA | 48695 | 0.0 | 19.49595 | 10-11 |
TACATGG | 34300 | 0.0 | 19.339415 | 2 |
AGAGTAC | 45520 | 0.0 | 19.288614 | 10-11 |
ACATGGG | 34505 | 0.0 | 18.606405 | 3 |
GTACTTT | 32160 | 0.0 | 18.523567 | 14-15 |
AGTACTT | 31570 | 0.0 | 17.753517 | 12-13 |