##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139330_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10628103 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.39109547583421 32.0 28.0 33.0 18.0 34.0 2 31.285953288183226 33.0 31.0 33.0 27.0 34.0 3 31.65562781994115 33.0 31.0 33.0 29.0 34.0 4 32.128290815397634 33.0 33.0 34.0 30.0 34.0 5 32.38315116065397 33.0 33.0 34.0 31.0 34.0 6 35.74384826718371 38.0 36.0 38.0 31.0 38.0 7 36.08831218515665 38.0 37.0 38.0 33.0 38.0 8 36.26577668658273 38.0 37.0 38.0 33.0 38.0 9 36.69897262004329 38.0 38.0 38.0 34.0 38.0 10-11 36.78383861165064 38.0 38.0 38.0 34.5 38.0 12-13 36.85386474895849 38.0 38.0 38.0 35.0 38.0 14-15 36.852114671828076 38.0 38.0 38.0 35.0 38.0 16-17 36.86410204154025 38.0 38.0 38.0 35.0 38.0 18-19 36.89001169823062 38.0 38.0 38.0 35.0 38.0 20-21 36.90599317868453 38.0 38.0 38.0 35.0 38.0 22-23 36.92918403882295 38.0 38.0 38.0 35.0 38.0 24-25 36.919130902030744 38.0 38.0 38.0 35.0 38.0 26-27 36.89971503813325 38.0 38.0 38.0 35.0 38.0 28-29 36.87828513310296 38.0 38.0 38.0 35.0 38.0 30-31 36.87620488465314 38.0 38.0 38.0 35.0 38.0 32-33 36.85347516426738 38.0 38.0 38.0 35.0 38.0 34-35 36.83373109958919 38.0 38.0 38.0 35.0 38.0 36-37 36.80830944404045 38.0 38.0 38.0 35.0 38.0 38-39 36.78901385907456 38.0 38.0 38.0 35.0 38.0 40-41 36.77675354587274 38.0 38.0 38.0 35.0 38.0 42-43 36.72878334894665 38.0 38.0 38.0 35.0 38.0 44-45 36.69113474217947 38.0 38.0 38.0 34.5 38.0 46-47 36.64349392710801 38.0 38.0 38.0 34.0 38.0 48-49 36.60808546371364 38.0 38.0 38.0 34.0 38.0 50-51 36.574692446766996 38.0 38.0 38.0 34.0 38.0 52-53 36.54284493778809 38.0 38.0 38.0 34.0 38.0 54-55 36.525950511504334 38.0 38.0 38.0 34.0 38.0 56-57 36.50429041421692 38.0 38.0 38.0 34.0 38.0 58-59 36.489218952488066 38.0 38.0 38.0 34.0 38.0 60-61 36.48283827868113 38.0 38.0 38.0 34.0 38.0 62-63 36.46391756102514 38.0 38.0 38.0 34.0 38.0 64-65 36.45290239301153 38.0 38.0 38.0 34.0 38.0 66-67 36.42239431220477 38.0 38.0 38.0 34.0 38.0 68-69 36.41176781140542 38.0 38.0 38.0 34.0 38.0 70-71 36.41347193504423 38.0 38.0 38.0 34.0 38.0 72-73 36.39204818209956 38.0 38.0 38.0 34.0 38.0 74-75 36.379849576296465 38.0 38.0 38.0 34.0 38.0 76-77 36.36464567456819 38.0 38.0 38.0 34.0 38.0 78-79 36.34982521470303 38.0 38.0 38.0 34.0 38.0 80-81 36.34777036126243 38.0 38.0 38.0 34.0 38.0 82-83 36.32428564540747 38.0 38.0 38.0 33.5 38.0 84-85 36.31211533781165 38.0 37.5 38.0 33.0 38.0 86-87 36.29442543652792 38.0 37.0 38.0 33.0 38.0 88-89 36.293706051244286 38.0 37.0 38.0 33.0 38.0 90-91 36.301359315557 38.0 37.0 38.0 33.0 38.0 92-93 36.27117643704126 38.0 37.0 38.0 33.0 38.0 94-95 36.261519404694226 38.0 37.0 38.0 33.0 38.0 96-97 36.25160585658888 38.0 37.0 38.0 33.0 38.0 98-99 36.27869099856765 38.0 37.0 38.0 33.0 38.0 100-101 35.72817178229934 38.0 36.0 38.0 31.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 3.0 18 11.0 19 24.0 20 95.0 21 475.0 22 2006.0 23 6129.0 24 14210.0 25 26829.0 26 44261.0 27 67028.0 28 95950.0 29 129612.0 30 167341.0 31 212488.0 32 269434.0 33 351946.0 34 484836.0 35 758020.0 36 1612171.0 37 6385233.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.71821688216608 20.096361504964715 16.065275242439782 24.120146370429417 2 14.338852380335418 21.475761008337987 41.635407560502564 22.549979050824028 3 17.788782989367412 26.029013838489547 31.094100110520483 25.088103061622558 4 12.586564130964858 18.620519579081986 37.95710297500881 30.83581331494435 5 13.625288605546121 37.126215570219784 35.321835431478235 13.926660392755855 6 29.92827600560514 38.0640929053849 18.458571581400747 13.549059507609213 7 26.420970891983263 32.89329243421897 22.5767100676386 18.109026606159162 8 24.435941202301105 36.989554956326636 20.677801109003177 17.89670273236908 9 25.365401520854665 17.237742238666677 20.96628156501682 36.43057467546184 10-11 24.23989963213567 26.962088154395946 28.466627581610755 20.33138463185763 12-13 25.199041879771105 24.338902452248647 28.70089933739348 21.76115633058676 14-15 22.233730499041716 25.758236456103933 26.56134335212048 25.44668969273387 16-17 21.64456817928844 28.973223161273467 27.16341759201995 22.218791067418145 18-19 21.68334744215407 27.816252815765903 29.247627728109144 21.252772013970887 20-21 22.509245386316174 26.839417518197557 29.26072147016121 21.39061562532506 22-23 22.17749015677087 26.80592507722237 29.149564951950214 21.86701981405655 24-25 21.96726365643986 27.00419429343453 29.21511056134154 21.813431488784065 26-27 21.854619271394093 27.147725260254212 29.176817934459947 21.820837533891748 28-29 21.714383237564352 27.12490142582396 29.2128472459258 21.947868090685887 30-31 22.069344306666256 26.936775417361865 29.16543366202567 21.828446613946216 32-33 21.81282125449171 27.096329523467155 29.168383233668603 21.922465988372533 34-35 21.975906373210886 27.22321518965783 29.1793132029555 21.621565234175787 36-37 21.94108699842799 27.13278511561213 29.067782880567243 21.858345005392636 38-39 21.855795368132608 27.17071197333809 29.154745741527183 21.81874691700212 40-41 22.138250143239606 27.048419903458065 29.025392682776495 21.787937270525834 42-43 22.03292749018776 27.08616817129566 28.881857413331026 21.999046925185556 44-45 22.02267804682208 27.261727186411903 28.724698476535522 21.990896290230495 46-47 22.211196050128375 27.186882042856553 28.361571771989492 22.24035013502558 48-49 22.044655671429407 27.340127416704984 28.43096537493393 22.184251536931672 50-51 22.03408638489511 27.491941959837867 28.33034007236327 22.14363158290375 52-53 22.243718108134292 27.383177588800805 28.260161359929604 22.112942943135298 54-55 22.11269618384449 27.374753176168394 28.257523198444094 22.255027441543024 56-57 22.19460836073626 27.51251190614385 28.117184335747424 22.17569539737246 58-59 22.096792961848095 27.597089484520087 28.25124605869822 22.054871494933597 60-61 22.270728482214874 27.622033577689365 28.159130788844788 21.948107151250973 62-63 22.143321356279262 27.765528616032576 28.08671753871565 22.004432488972515 64-65 22.045122436815692 27.69543915139859 28.106207071567148 22.15323134021858 66-67 22.139523825554193 27.719277574859873 27.955702647657844 22.185495951928093 68-69 22.10697162897851 27.645573574502748 28.04577533068559 22.20167946583316 70-71 22.1288835902329 27.37189738566224 28.10690832649927 22.392310697605588 72-73 22.158838807781848 27.38111653505057 28.059248495517082 22.4007961616505 74-75 22.053179507444966 27.439370247459944 28.07857785127361 22.428872393821482 76-77 22.203398371129424 27.391678416021236 27.965511294255762 22.439411918593578 78-79 22.176358155617383 27.42801189506283 27.929171405091147 22.46645854422864 80-81 22.234017387735573 27.47600539768531 27.87214748442482 22.417829730154292 82-83 22.235010286194505 27.47603154526983 27.94312488807859 22.345833280457075 84-85 22.340892239617855 27.493319974325303 27.885775928666266 22.280011857390576 86-87 22.188991042225325 27.545813230240107 27.88060779751645 22.38458793001812 88-89 22.226058301250863 27.545809016022538 27.863181265169786 22.364951417556817 90-91 22.287460782297423 27.493916776252142 27.917054529764695 22.301567911685737 92-93 22.304747019238096 27.44793695633549 27.925942817273818 22.321373207152597 94-95 22.207995538443942 27.56883398861043 27.902201141539912 22.320969331405717 96-97 22.19277448773509 27.615412480016577 27.874451147979546 22.31736188426879 98-99 22.426921730681258 28.165593818387723 27.943540456087725 21.46394399484329 100-101 23.08918426193728 30.689515939088245 25.26230000166298 20.9589997973115 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4590.0 1 4163.5 2 3763.0 3 4029.5 4 4956.5 5 6819.0 6 8766.5 7 12222.5 8 15896.0 9 17091.0 10 16278.0 11 15229.0 12 16350.0 13 20294.5 14 28946.0 15 39814.5 16 47760.5 17 51380.5 18 50884.5 19 46914.5 20 41714.0 21 37281.0 22 35566.5 23 38567.0 24 46202.0 25 58698.0 26 75595.5 27 94384.0 28 115091.0 29 138018.0 30 159442.0 31 183070.5 32 210550.5 33 237405.0 34 263418.5 35 287500.5 36 313131.0 37 336446.0 38 354781.5 39 371518.0 40 388074.0 41 403658.5 42 413604.5 43 423589.5 44 441009.0 45 451976.0 46 452346.5 47 452122.0 48 447974.5 49 437835.0 50 426127.0 51 412596.5 52 393288.0 53 372548.5 54 350423.5 55 325761.5 56 299705.5 57 271788.0 58 242253.5 59 208870.5 60 172916.5 61 138904.5 62 108599.0 63 82903.5 64 62297.5 65 46232.5 66 34186.5 67 25861.5 68 19353.0 69 14088.5 70 10361.5 71 7435.5 72 5241.0 73 3645.0 74 2502.5 75 1649.5 76 1066.5 77 660.0 78 402.0 79 229.0 80 130.0 81 86.0 82 61.0 83 45.5 84 36.0 85 23.5 86 15.5 87 10.5 88 6.5 89 4.0 90 3.0 91 2.5 92 2.5 93 2.0 94 1.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.001966484517509851 4 0.0 5 0.05964375768657869 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 4.704508415095337E-6 14-15 3.293155890566736E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.7062880903426595E-6 28-29 4.708020126409399E-6 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 1.4311786953976108E-5 40-41 0.0 42-43 0.0 44-45 0.0 46-47 2.840470554310972E-4 48-49 0.0 50-51 6.960296381351854E-5 52-53 2.5021071495359817E-5 54-55 0.001812719307565394 56-57 0.0023520258901277465 58-59 7.706467885387572E-4 60-61 0.002694180072311999 62-63 0.004987816365072109 64-65 0.002279934060341872 66-67 0.007394969085768283 68-69 0.004419256158018595 70-71 0.0018846079199041634 72-73 7.129368054435965E-4 74-75 7.567042362154074E-4 76-77 0.0 78-79 5.537429089067442E-6 80-81 2.3471057587413346E-4 82-83 0.0 84-85 0.001177985667271973 86-87 0.001205955698356024 88-89 1.565349697383118E-4 90-91 5.504619605604546E-4 92-93 2.544214453374637E-4 94-95 0.0 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 139.0 20-21 586.0 22-23 1229.0 24-25 1507.0 26-27 3064.0 28-29 6632.0 30-31 17133.0 32-33 22116.0 34-35 30929.0 36-37 48992.0 38-39 57613.0 40-41 57967.0 42-43 68399.0 44-45 81301.0 46-47 81620.0 48-49 74777.0 50-51 67552.0 52-53 60766.0 54-55 65178.0 56-57 66104.0 58-59 70855.0 60-61 72931.0 62-63 69064.0 64-65 75714.0 66-67 81063.0 68-69 82156.0 70-71 86897.0 72-73 72898.0 74-75 74498.0 76-77 78618.0 78-79 81707.0 80-81 83040.0 82-83 79457.0 84-85 78591.0 86-87 81605.0 88-89 85528.0 90-91 87887.0 92-93 86645.0 94-95 94082.0 96-97 154314.0 98-99 904845.0 100-101 7232104.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.68709059466939 #Duplication Level Percentage of deduplicated Percentage of total 1 89.13904338730532 74.59787199475586 2 7.4782496651346495 12.516659144313588 3 1.8485243453615277 4.6409287307016625 4 0.701113095293329 2.3469646049168755 5 0.3120270522879283 1.305631809640375 6 0.16491832215328212 0.8280920740057556 7 0.10325411874657658 0.6048725752872255 8 0.06004977209019901 0.4020312573681387 9 0.04159248291137368 0.31326784969152305 >10 0.14529444937704594 1.9180416133934477 >50 0.00446977784753894 0.25293115532525745 >100 0.0013254331238167975 0.1902240755084715 >500 1.1837117560333711E-4 0.06481836428463846 >1k 1.9727191836388544E-5 0.017664750807175895 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 9.409016830190674E-6 0.0 0.0 0.0 3 0.0 9.409016830190674E-6 0.0 0.0 0.0 4 0.0 2.8227050490572023E-5 0.0 9.409016830190674E-6 0.0 5 0.0 2.8227050490572023E-5 0.0 9.409016830190674E-6 0.0 6 9.409016830190674E-6 2.8227050490572023E-5 0.0 2.8227050490572023E-5 9.409016830190674E-6 7 9.409016830190674E-6 2.8227050490572023E-5 0.0 2.8227050490572023E-5 9.409016830190674E-6 8 9.409016830190674E-6 3.76360673207627E-5 0.0 2.8227050490572023E-5 9.409016830190674E-6 9 9.409016830190674E-6 8.468115147171607E-5 0.0 4.704508415095337E-5 9.409016830190674E-6 10-11 1.4113525245286011E-5 8.468115147171607E-5 0.0 6.586311781133472E-5 9.409016830190674E-6 12-13 1.881803366038135E-5 9.879467671700207E-5 0.0 8.468115147171607E-5 1.4113525245286011E-5 14-15 1.881803366038135E-5 1.5995328611324148E-4 0.0 8.468115147171607E-5 1.881803366038135E-5 16-17 4.704508415095337E-5 1.6936230294343214E-4 0.0 8.468115147171607E-5 2.8227050490572023E-5 18-19 5.6454100981144045E-5 1.8347582818871815E-4 0.0 9.879467671700207E-5 2.8227050490572023E-5 20-21 5.6454100981144045E-5 1.9758935343400417E-4 0.0 1.1290820196228809E-4 2.8227050490572023E-5 22-23 5.6454100981144045E-5 2.2111189550948085E-4 0.0 1.1761271037738343E-4 4.704508415095337E-5 24-25 5.6454100981144045E-5 2.493389460000529E-4 0.0 1.4583976086795546E-4 6.586311781133472E-5 26-27 5.6454100981144045E-5 2.540434544151482E-4 0.0 2.587479628302436E-4 6.586311781133472E-5 28-29 5.6454100981144045E-5 2.634524712453389E-4 0.0 6.633356865284425E-4 6.586311781133472E-5 30-31 5.6454100981144045E-5 3.0579304698119693E-4 0.0 0.001754781638830561 6.586311781133472E-5 32-33 5.6454100981144045E-5 3.1990657222648295E-4 0.0 0.003961196085510274 9.409016830190674E-5 34-35 5.6454100981144045E-5 3.7165616479253167E-4 0.0 0.0072026023835109615 1.1290820196228809E-4 36-37 5.6454100981144045E-5 4.3281477418877104E-4 0.0 0.01199649645849311 1.1290820196228809E-4 38-39 5.6454100981144045E-5 4.5163280784915236E-4 0.0 0.02034229438687224 1.1290820196228809E-4 40-41 5.6454100981144045E-5 4.986778920001057E-4 0.0 0.041950101537405124 1.1290820196228809E-4 42-43 5.6454100981144045E-5 5.316094509057732E-4 0.0 0.05048407980238807 1.1761271037738343E-4 44-45 5.6454100981144045E-5 6.068815855472985E-4 0.0 0.06193485328473011 1.2231721879247878E-4 46-47 5.6454100981144045E-5 6.680401949435379E-4 0.0 0.07504631823760083 1.3172623562266947E-4 48-49 5.6454100981144045E-5 6.680401949435379E-4 0.0 0.08682170280058445 1.4113525245286013E-4 50-51 5.6454100981144045E-5 7.574258548303492E-4 0.0 0.09790552462654906 1.4113525245286013E-4 52-53 5.6454100981144045E-5 7.621303632454447E-4 0.0 0.11533572830447729 1.4113525245286013E-4 54-55 5.6454100981144045E-5 7.621303632454447E-4 0.0 0.15363513131176842 1.4113525245286013E-4 56-57 5.6454100981144045E-5 7.621303632454447E-4 0.0 0.1956275734249094 1.4113525245286013E-4 58-59 5.6454100981144045E-5 7.668348716605401E-4 0.0 0.24351946909057995 1.4113525245286013E-4 60-61 6.115860939623938E-5 7.715393800756354E-4 0.0 0.2602110649473382 1.4113525245286013E-4 62-63 7.52721346415254E-5 7.80948396905826E-4 0.0 0.26907435880137787 1.7877131977362282E-4 64-65 7.52721346415254E-5 9.314926661888768E-4 0.0 0.2777776993693042 1.7877131977362282E-4 66-67 7.52721346415254E-5 9.361971746039721E-4 0.0 0.28349367709364504 1.7877131977362282E-4 68-69 7.52721346415254E-5 9.550152082643535E-4 0.0 0.2891720187506651 1.7877131977362282E-4 70-71 7.52721346415254E-5 9.597197166794488E-4 0.0 0.29404588946870386 1.8347582818871815E-4 72-73 8.468115147171607E-5 9.644242250945441E-4 0.0 0.29781420070919523 2.1640738709438552E-4 74-75 8.468115147171607E-5 9.973557840002114E-4 0.0 0.3010556070071959 2.1640738709438552E-4 76-77 8.468115147171607E-5 0.0010491053765662602 0.0 0.30383126697210217 2.2111189550948085E-4 78-79 8.468115147171607E-5 0.0010773324270568322 0.0 0.30613177158708377 2.2581640392457618E-4 80-81 8.468115147171607E-5 0.0010820369354719275 0.0 0.3072420355730463 2.3522542075476687E-4 82-83 8.468115147171607E-5 0.0010820369354719275 0.0 0.30758546468734826 2.4463443758495756E-4 84-85 8.938565988681141E-5 0.0010820369354719275 0.0 0.30797593888580116 2.4463443758495756E-4 86-87 9.879467671700207E-5 0.0010820369354719275 0.0 0.30818764176448044 2.4463443758495756E-4 88-89 1.0349918513209742E-4 0.0010914459523021182 0.0 0.3082299823402163 2.4463443758495756E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15395 0.0 53.181625 1 GTATCAA 28405 0.0 37.98693 1 TCAACGC 35335 0.0 30.400753 4 ATCAACG 35495 0.0 30.215235 3 TATCAAC 36570 0.0 29.48177 2 CAACGCA 36540 0.0 29.410124 5 AACGCAG 37765 0.0 28.484404 6 TGGTATC 6805 0.0 25.584936 2 ACGCAGA 42895 0.0 25.07783 7 GTGGTAT 7350 0.0 24.812996 1 CGCAGAG 43325 0.0 24.79893 8 GCAGAGT 49895 0.0 21.568363 9 GAGTACT 29235 0.0 20.465956 12-13 GTACATG 33535 0.0 19.988256 1 CAGAGTA 48695 0.0 19.49595 10-11 TACATGG 34300 0.0 19.339415 2 AGAGTAC 45520 0.0 19.288614 10-11 ACATGGG 34505 0.0 18.606405 3 GTACTTT 32160 0.0 18.523567 14-15 AGTACTT 31570 0.0 17.753517 12-13 >>END_MODULE