##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2139328_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10955718 Sequences flagged as poor quality 0 Sequence length 19-101 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.26921585604887 32.0 28.0 33.0 18.0 33.0 2 31.250244392927968 33.0 31.0 33.0 27.0 34.0 3 31.635412485060314 33.0 31.0 33.0 29.0 34.0 4 32.12606476362389 33.0 33.0 34.0 30.0 34.0 5 32.38216564172243 33.0 33.0 34.0 31.0 34.0 6 35.75728190521151 38.0 36.0 38.0 31.0 38.0 7 36.094693109114345 38.0 37.0 38.0 33.0 38.0 8 36.27944129266562 38.0 37.0 38.0 33.0 38.0 9 36.705434185144235 38.0 38.0 38.0 34.0 38.0 10-11 36.78594679965293 38.0 38.0 38.0 34.5 38.0 12-13 36.85652606246345 38.0 38.0 38.0 35.0 38.0 14-15 36.85756643243282 38.0 38.0 38.0 35.0 38.0 16-17 36.86978785872364 38.0 38.0 38.0 35.0 38.0 18-19 36.89571030397095 38.0 38.0 38.0 35.0 38.0 20-21 36.91156187499392 38.0 38.0 38.0 35.0 38.0 22-23 36.93402045775214 38.0 38.0 38.0 35.0 38.0 24-25 36.92498648539869 38.0 38.0 38.0 35.0 38.0 26-27 36.90307783303005 38.0 38.0 38.0 35.0 38.0 28-29 36.88541946406065 38.0 38.0 38.0 35.0 38.0 30-31 36.876376826599014 38.0 38.0 38.0 35.0 38.0 32-33 36.85523888343714 38.0 38.0 38.0 35.0 38.0 34-35 36.833646159225864 38.0 38.0 38.0 35.0 38.0 36-37 36.806059811960246 38.0 38.0 38.0 35.0 38.0 38-39 36.784413460450125 38.0 38.0 38.0 35.0 38.0 40-41 36.77871471444614 38.0 38.0 38.0 35.0 38.0 42-43 36.73267236221396 38.0 38.0 38.0 35.0 38.0 44-45 36.690976931293505 38.0 38.0 38.0 34.5 38.0 46-47 36.64217288505121 38.0 38.0 38.0 34.0 38.0 48-49 36.60558554248584 38.0 38.0 38.0 34.0 38.0 50-51 36.57062624475447 38.0 38.0 38.0 34.0 38.0 52-53 36.543021118287015 38.0 38.0 38.0 34.0 38.0 54-55 36.528872313977864 38.0 38.0 38.0 34.0 38.0 56-57 36.510474446611624 38.0 38.0 38.0 34.0 38.0 58-59 36.49714245304378 38.0 38.0 38.0 34.0 38.0 60-61 36.49528656233845 38.0 38.0 38.0 34.0 38.0 62-63 36.47789370847852 38.0 38.0 38.0 34.0 38.0 64-65 36.46741357069705 38.0 38.0 38.0 34.0 38.0 66-67 36.43987421345655 38.0 38.0 38.0 34.0 38.0 68-69 36.4262418601472 38.0 38.0 38.0 34.0 38.0 70-71 36.43029504037192 38.0 38.0 38.0 34.0 38.0 72-73 36.41107614583729 38.0 38.0 38.0 34.0 38.0 74-75 36.39996045486384 38.0 38.0 38.0 34.0 38.0 76-77 36.38495607437886 38.0 38.0 38.0 34.0 38.0 78-79 36.37468078762867 38.0 38.0 38.0 34.0 38.0 80-81 36.369939060660805 38.0 38.0 38.0 34.0 38.0 82-83 36.35083215742414 38.0 38.0 38.0 33.5 38.0 84-85 36.337891830009866 38.0 38.0 38.0 34.0 38.0 86-87 36.31837139408059 38.0 37.5 38.0 33.0 38.0 88-89 36.320594749485075 38.0 37.5 38.0 33.0 38.0 90-91 36.32653552072365 38.0 38.0 38.0 33.5 38.0 92-93 36.29619531947328 38.0 37.0 38.0 33.0 38.0 94-95 36.28677827068858 38.0 37.0 38.0 33.0 38.0 96-97 36.27928077856226 38.0 37.0 38.0 33.0 38.0 98-99 36.31092759716248 38.0 37.0 38.0 33.0 38.0 100-101 35.75998543040413 38.0 36.0 38.0 31.5 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 2.0 18 7.0 19 20.0 20 81.0 21 536.0 22 1918.0 23 6086.0 24 13714.0 25 26690.0 26 44729.0 27 68648.0 28 99230.0 29 134216.0 30 173148.0 31 218230.0 32 279509.0 33 362151.0 34 500964.0 35 779375.0 36 1659008.0 37 6587456.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.63744776928358 20.18030219470782 16.12826288518927 24.053987150819324 2 14.267928400493696 21.470486918337986 41.78345955965643 22.47812512151189 3 17.752931855356934 26.062925356350043 31.19306066713401 24.991082121159014 4 12.49958240984297 18.663925084599658 38.01349213260144 30.823000372955928 5 13.515370462139492 37.14007316214675 35.46572234514143 13.878834030572328 6 29.77893370384305 38.17105369086718 18.474215929982865 13.575796675306902 7 26.341395424745322 32.87674983967276 22.62781864228342 18.154036093298494 8 24.28659627785235 37.11542228450933 20.688383910575283 17.90959752706304 9 25.21820112565877 17.233101472673905 21.06832249607009 36.48037490559724 10-11 24.18835077719233 26.99831722576284 28.56075704029622 20.25257495674861 12-13 25.113001498988996 24.422124794656305 28.78424895494065 21.680624751414047 14-15 22.117362683983902 25.84293456364414 26.608895595485606 25.430807156886353 16-17 21.525960233733656 29.034231257138966 27.284537626835593 22.155270882291784 18-19 21.53750215184436 27.833447337728117 29.414416289283825 21.2146342211437 20-21 22.3704758948215 26.893478888110085 29.422644808196495 21.313400408871917 22-23 22.02587430374988 26.93497137864701 29.284342713915954 21.754811603687155 24-25 21.887927067965705 27.09421239829976 29.383106805334425 21.63475372840011 26-27 21.842519274523106 27.21115401617563 29.30289498933846 21.643431719962805 28-29 21.69283234367668 27.14593220861452 29.40940503006646 21.75183041764234 30-31 21.96457317177121 27.063744624966972 29.387654719802658 21.584027483459163 32-33 21.61770461814821 27.113521179502182 29.458192393772887 21.810581808576725 34-35 21.752973736154964 27.17408184355011 29.3487956526277 21.72414876766722 36-37 21.774788730585744 27.16887685525381 29.387640074766374 21.668694339394076 38-39 21.63981261446188 27.23756083571401 29.40572711422562 21.71689943559849 40-41 21.944356041872005 27.104648764231236 29.28209867438302 21.66889651951374 42-43 21.91572576489361 27.166501035034035 29.105326380358687 21.812446819713664 44-45 21.887903190912812 27.372656971564375 28.9332846633743 21.80615517414851 46-47 22.06698048991049 27.280057348448583 28.583822468094088 22.069139693546838 48-49 21.94236797431358 27.410344698292867 28.561945489056225 22.08534183833733 50-51 21.86506414674764 27.53522876359103 28.546831985778155 22.052875103883178 52-53 22.067718130937468 27.44008368896197 28.545230406924876 21.946967773175686 54-55 22.00326488384056 27.414568084030773 28.42165940158369 22.160507630544977 56-57 22.103259195427427 27.614487474704497 28.254658327114367 22.027595002753703 58-59 21.938350348277773 27.730690389665064 28.472630341233597 21.858328920823567 60-61 22.09695325568782 27.85776510146527 28.27124107787157 21.774040564975344 62-63 21.942457834339617 28.031280945658928 28.214283724283245 21.811977495718214 64-65 21.93024334569042 27.927288262201095 28.192179013851483 21.950289378257008 66-67 22.007478401976925 27.921698339247968 28.09619914243485 21.97462411634026 68-69 21.98999547763589 27.807870887841464 28.217073888519508 21.985059746003138 70-71 22.01351859374906 27.48500661471354 28.313003096553647 22.188471694983757 72-73 22.06013793692777 27.46891947521595 28.281667462025666 22.18927512583061 74-75 21.907162694451 27.61357740871024 28.280222827938385 22.199037068900378 76-77 22.072942694129434 27.54772457275466 28.201139221613104 22.1781935115028 78-79 22.028656565750858 27.60928969224386 28.132565587335023 22.22948815467026 80-81 22.058307033546438 27.627015790698806 28.08988301782611 22.224794157928642 82-83 22.09633009306643 27.601728538068244 28.158629326623196 22.14331204224213 84-85 22.22178632409923 27.576783745167983 28.106669952065104 22.094759978667685 86-87 22.056983660515655 27.644057712636734 28.157025946027854 22.14193268081976 88-89 22.126490310875223 27.64268291642858 28.07280320961376 22.15802356308244 90-91 22.16438934239209 27.67489801702189 28.088552466657156 22.072160173928868 92-93 22.205380090879974 27.613245702614293 28.059959310275516 22.121414896230217 94-95 22.065374373134723 27.73854413466864 28.042561507089925 22.15351998510671 96-97 22.13225070342105 27.764930692720636 28.029106617975465 22.07371198588285 98-99 22.345870991886926 28.345046068470815 28.08266304036296 21.226419899279296 100-101 22.965206479488256 30.855457239025764 25.465568483834456 20.713767797651524 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 3355.0 1 3094.5 2 3391.0 3 4233.5 4 5222.5 5 7149.5 6 9392.5 7 13200.5 8 17308.0 9 19013.0 10 18125.0 11 16939.5 12 18170.5 13 22194.5 14 31325.0 15 42797.5 16 51139.0 17 54981.0 18 54302.0 19 50210.5 20 45001.5 21 40420.0 22 39185.0 23 43140.5 24 51592.5 25 64993.0 26 83420.0 27 104150.0 28 126617.0 29 150851.5 30 173442.5 31 198462.0 32 226312.0 33 254879.5 34 282779.0 35 305328.5 36 330391.5 37 352851.5 38 368997.0 39 383991.0 40 399322.5 41 415358.0 42 424949.0 43 432638.0 44 442074.0 45 454712.0 46 459577.5 47 454888.0 48 449518.0 49 438879.5 50 426468.0 51 412188.0 52 393172.0 53 371769.5 54 349772.0 55 325491.0 56 299217.0 57 271063.5 58 241729.0 59 210950.5 60 177328.5 61 143452.5 62 111969.5 63 85379.5 64 64405.0 65 48202.0 66 35622.5 67 26792.0 68 20409.0 69 15123.5 70 11062.0 71 7927.5 72 5642.0 73 3961.0 74 2677.0 75 1694.0 76 1022.5 77 622.5 78 380.5 79 223.5 80 144.0 81 96.5 82 74.0 83 56.0 84 39.0 85 31.5 86 24.5 87 15.5 88 9.5 89 5.0 90 3.5 91 2.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 1.5 99 3.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0018072754337050295 4 0.0 5 0.057869324493383265 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 4.563826852790479E-6 14-15 3.651061482232383E-5 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 4.565285731646844E-6 28-29 4.566767650077457E-6 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 1.849935370195423E-5 40-41 0.0 42-43 0.0 44-45 9.41634614601429E-6 46-47 2.9422028918437673E-4 48-49 0.0 50-51 8.188304413606862E-5 52-53 2.424023938884733E-5 54-55 0.001839433552048651 56-57 0.002402370063344456 58-59 7.620087758670435E-4 60-61 0.002870828563986632 62-63 0.004678259011007009 64-65 0.0023609776004398803 66-67 0.007379692035462274 68-69 0.004154068220905122 70-71 0.0018319089160356225 72-73 7.592243533620732E-4 74-75 7.28176779371195E-4 76-77 0.0 78-79 0.0 80-81 1.7863974280640763E-4 82-83 0.0 84-85 0.0010744283517729115 86-87 0.0010505952205588477 88-89 1.907702010212939E-4 90-91 4.3060490356999797E-4 92-93 2.3465100556254516E-4 94-95 1.734466680114565E-5 96-97 0.0 98-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution warn #Length Count 18-19 121.0 20-21 509.0 22-23 1088.0 24-25 1316.0 26-27 2774.0 28-29 6178.0 30-31 16555.0 32-33 21940.0 34-35 30459.0 36-37 48790.0 38-39 59025.0 40-41 58670.0 42-43 68636.0 44-45 82141.0 46-47 83139.0 48-49 76109.0 50-51 68834.0 52-53 64760.0 54-55 69319.0 56-57 72280.0 58-59 72716.0 60-61 71842.0 62-63 70108.0 64-65 78155.0 66-67 84133.0 68-69 84428.0 70-71 94009.0 72-73 73573.0 74-75 74812.0 76-77 78963.0 78-79 82605.0 80-81 84055.0 82-83 79597.0 84-85 79025.0 86-87 82587.0 88-89 85667.0 90-91 88831.0 92-93 87418.0 94-95 94176.0 96-97 157692.0 98-99 926864.0 100-101 7491819.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 83.5039767725402 #Duplication Level Percentage of deduplicated Percentage of total 1 88.90958692889598 74.24304081766672 2 7.652840816728465 12.780852836080825 3 1.8800520755710612 4.7097547454895565 4 0.6968640769774289 2.327636867901636 5 0.3158011874414662 1.3185327510426403 6 0.17506548387511542 0.8771198459508689 7 0.0968030801137884 0.5658409507332495 8 0.07015390129412137 0.46865037953339117 9 0.043027855021381387 0.3233697305649893 >10 0.15579822798300474 2.00781274058638 >50 0.0032190594255536065 0.1808682812708607 >100 6.919352570690042E-4 0.10617829008464302 >500 3.814942018648263E-5 0.02140733887464257 >1k 5.722199537758166E-5 0.06893442421957176 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 2.7382961116742874E-5 0.0 0.0 0.0 5 0.0 2.7382961116742874E-5 0.0 0.0 0.0 6 0.0 2.7382961116742874E-5 0.0 0.0 0.0 7 0.0 2.7382961116742874E-5 0.0 9.127653705580958E-6 0.0 8 0.0 3.651061482232383E-5 0.0 9.127653705580958E-6 0.0 9 0.0 7.302122964464766E-5 0.0 1.8255307411161916E-5 1.8255307411161916E-5 10-11 0.0 7.302122964464766E-5 0.0 6.389357593906671E-5 1.8255307411161916E-5 12-13 0.0 7.758505649743814E-5 0.0 6.845740279185719E-5 2.2819134263952393E-5 14-15 0.0 1.6429776670045723E-4 0.0 8.214888335022862E-5 5.020209538069527E-5 16-17 0.0 1.734254204060382E-4 0.0 9.127653705580957E-5 6.845740279185719E-5 18-19 0.0 1.734254204060382E-4 0.0 9.127653705580957E-5 8.67127102030191E-5 20-21 0.0 1.8255307411161914E-4 0.0 9.127653705580957E-5 9.127653705580957E-5 22-23 0.0 2.0537220837557157E-4 0.0 1.0040419076139053E-4 9.127653705580957E-5 24-25 0.0 2.19063688933943E-4 0.0 1.4147863243650486E-4 9.127653705580957E-5 26-27 0.0 2.2819134263952394E-4 0.0 1.7798924725882868E-4 9.584036390860006E-5 28-29 0.0 2.327551694923144E-4 0.0 2.4644665005068585E-4 1.1409567131976197E-4 30-31 0.0 2.6470195746184776E-4 0.0 7.165208158881051E-4 1.1865949817255245E-4 32-33 0.0 2.6470195746184776E-4 0.0 0.0018529137022329344 1.3691480558371437E-4 34-35 0.0 2.9208491857859065E-4 0.0 0.003345285083095421 1.5517011299487628E-4 36-37 0.0 3.1946787969533354E-4 0.0 0.005709347392840888 1.6429776670045723E-4 38-39 0.0 3.422870139592859E-4 0.0 0.009574908737154424 1.6429776670045723E-4 40-41 0.0 4.0161676304556216E-4 0.0 0.013937927208422123 1.6429776670045723E-4 42-43 0.0 4.107444167511431E-4 0.0 0.01823248827689796 1.734254204060382E-4 44-45 0.0 4.335635510150955E-4 0.0 0.02266852797781031 1.8255307411161914E-4 46-47 0.0 4.746379926902098E-4 0.0 0.02762028011308798 2.19063688933943E-4 48-49 0.0 4.746379926902098E-4 0.0 0.032622234343746344 2.373189963451049E-4 50-51 0.0 5.157124343653241E-4 0.0 0.037505529076232155 2.4644665005068585E-4 52-53 0.0 5.202762612181146E-4 0.0 0.04276305761064679 2.601381306090573E-4 54-55 0.0 5.202762612181146E-4 0.0 0.047838033070949804 2.783934380202192E-4 56-57 0.0 5.202762612181146E-4 0.0 0.052844551128460954 2.9208491857859065E-4 58-59 0.0 5.33967741776486E-4 0.0 0.057586367228510266 3.0121257228417163E-4 60-61 0.0 5.750421834516004E-4 0.0 0.062378385423940266 3.1946787969533354E-4 62-63 0.0 5.978613177155527E-4 0.0 0.06707912708231445 3.2859553340091447E-4 64-65 0.0 6.937016816241528E-4 0.0 0.07164295393510495 3.2859553340091447E-4 66-67 0.0 7.165208158881051E-4 0.0 0.0762204722684538 3.422870139592859E-4 68-69 0.0 7.347761232992671E-4 0.0 0.08068389493048288 3.468508408120764E-4 70-71 0.0 7.484676038576385E-4 0.0 0.08523403030271498 3.605423213704478E-4 72-73 0.0 7.484676038576385E-4 0.0 0.08879381524789155 4.28999724162305E-4 74-75 0.0 7.986696992383338E-4 0.0 0.09178768566332211 4.335635510150955E-4 76-77 0.0 8.214888335022863E-4 0.0 0.09438906696941268 4.38127377867886E-4 78-79 0.0 8.351803140606577E-4 0.0 0.09689460791159465 4.38127377867886E-4 80-81 0.0 8.397441409134481E-4 0.0 0.09800818166367553 4.563826852790479E-4 82-83 0.0 8.397441409134481E-4 0.0 0.09837328781189877 4.837656463957908E-4 84-85 0.0 8.488717946190291E-4 0.0 0.09882967049717782 4.837656463957908E-4 86-87 0.0 8.534356214718196E-4 0.0 0.09902135122499502 4.883294732485812E-4 88-89 0.0 8.5799944832461E-4 0.0 0.09908980862778688 4.928933001013717E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15910 0.0 53.54355 1 GTATCAA 29620 0.0 38.214428 1 TCAACGC 36755 0.0 30.9018 4 ATCAACG 37035 0.0 30.681067 3 TATCAAC 37910 0.0 30.180023 2 CAACGCA 37820 0.0 30.06621 5 AACGCAG 38860 0.0 29.32379 6 CTTATAC 8275 0.0 28.14805 1 ACGCAGA 44445 0.0 25.589895 7 CGCAGAG 44880 0.0 25.351578 8 TGGTATC 7055 0.0 24.79262 2 GTGGTAT 7520 0.0 24.419643 1 GCAGAGT 51355 0.0 22.189125 9 TATACAC 13385 0.0 21.116974 3 GAGTACT 32380 0.0 21.096455 12-13 CAGAGTA 50475 0.0 19.738867 10-11 GTACATG 33235 0.0 19.384737 1 AGAGTAC 47165 0.0 19.354153 10-11 TACATGG 32880 0.0 19.341974 2 GTACTTT 35655 0.0 19.122494 14-15 >>END_MODULE